ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf8m08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001058576.1| Oryza sativa (japonica cultivar-group) Os04g0115400 (Os04g0115400) mRNA, complete cds Length = 1467 Score = 335 bits (169), Expect = 3e-88 Identities = 376/445 (84%) Strand = Plus / Plus Query: 570 aggtcacagcagaacgtgagcagaaaatccgcagtgaggttaaggagatacagaagacgt 629 |||||| ||||||||| ||||||||||| || |||||||| ||||||||||||||| || Sbjct: 654 aggtcatagcagaacgcgagcagaaaatacgtagtgaggtcaaggagatacagaaggtgt 713 Query: 630 tcttttgcagcctctgtaataagcaatacaagcttgcatatgaatttgagagtcatctaa 689 |||||||||| |||||||| ||||| ||||| | || ||||||||||| |||| | | Sbjct: 714 tcttttgcagtctctgtaacaagcagtacaaattggcgcatgaatttgagtctcatttga 773 Query: 690 gctcatatgaccataatcataggaagaggttcaaggaaatgaaagagatgcaaagcggca 749 ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 774 gctcatacgaccacaatcataggaagaggttcaaggaaatgaaagaaatgcaaagcagca 833 Query: 750 acagtggcaaccgtgatgataggcagaaacgtgagcaacagcgagaagagaaggagctgg 809 ||| ||| ||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct: 834 gcagcagcagccgtgatgacaggcagaaacgtgagcagcaacgagaagagaaggagctgg 893 Query: 810 caaaatttgcccaactggcagatgctcatcgaaagcagcagaaagagaagcaagaacaac 869 |||||||||| ||||| || ||||||||| ||||||||||| | |||||||||||| | Sbjct: 894 caaaatttgctcaacttgctgatgctcatagaaagcagcagcagcagaagcaagaaccat 953 Query: 870 cagagatctcaggagatcaagctacgtcgaagaacttgccgaccccgggcaatcaggatc 929 |||||| |||| ||| | ||| |||||||||||| | ||| |||||||||| Sbjct: 954 cagagagctcatcagagagaattacaatgaagaacttgcctaacccttcaaatcaggatc 1013 Query: 930 agcgtcgaacattgaagtttggcttctccaagatgaccccttccaaggcgcctgttggca 989 ||||| ||| |||||||||||||||||||| ||| | ||||||||||| || ||||||| Sbjct: 1014 agcgtaaaaccttgaagtttggcttctccaaaatggctccttccaaggctccagttggca 1073 Query: 990 acatgagcaagaaaccaaagattgc 1014 | | ||||||||||| ||| |||| Sbjct: 1074 atgtaagcaagaaacctaaggttgc 1098 Score = 270 bits (136), Expect = 1e-68 Identities = 246/282 (87%), Gaps = 3/282 (1%) Strand = Plus / Plus Query: 286 ggagaacctggacacggaggggctggagcaggcctccgtcgacacgcagctcgcctcctc 345 ||||||||| || |||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 235 ggagaacctcgagacggaggggctggagcaggcgtccgttgacacgcagctcacctcctc 294 Query: 346 caacgtcggcttcaggcttctgcagaagatgggctggaagtccggcaagggcctcggcaa 405 ||||||||| |||||||| || ||||||||||| |||||| |||||||| |||||||| Sbjct: 295 caacgtcggattcaggctgctccagaagatggggtggaag---ggcaaggggctcggcaa 351 Query: 406 gaacgagcaaggtatactagagcccataaaagctggtatcagggatgcaaaactaggagt 465 |||||||||||||||| |||||| ||||||||||||||||| ||||||||| | || || Sbjct: 352 gaacgagcaaggtataacagagccaataaaagctggtatcagagatgcaaaattgggtgt 411 Query: 466 ggggaagcaagagcaggatgacttcttcacagctgaggacaatgtacaaagaaagagatt 525 ||||||||||||||| ||||||||||||||| | || || ||||| ||||| | || ||| Sbjct: 412 ggggaagcaagagcaagatgacttcttcacatcagaagataatgtgcaaaggaggaaatt 471 Query: 526 aaatgttgaacttgaggagaccgaagagcatattaagaagcg 567 ||| | || ||||||||||| ||||| ||||| |||||||| Sbjct: 472 aaacatagagcttgaggagactgaagaacatataaagaagcg 513
>dbj|AK070523.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055J24, full insert sequence Length = 1547 Score = 335 bits (169), Expect = 3e-88 Identities = 376/445 (84%) Strand = Plus / Plus Query: 570 aggtcacagcagaacgtgagcagaaaatccgcagtgaggttaaggagatacagaagacgt 629 |||||| ||||||||| ||||||||||| || |||||||| ||||||||||||||| || Sbjct: 732 aggtcatagcagaacgcgagcagaaaatacgtagtgaggtcaaggagatacagaaggtgt 791 Query: 630 tcttttgcagcctctgtaataagcaatacaagcttgcatatgaatttgagagtcatctaa 689 |||||||||| |||||||| ||||| ||||| | || ||||||||||| |||| | | Sbjct: 792 tcttttgcagtctctgtaacaagcagtacaaattggcgcatgaatttgagtctcatttga 851 Query: 690 gctcatatgaccataatcataggaagaggttcaaggaaatgaaagagatgcaaagcggca 749 ||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 852 gctcatacgaccacaatcataggaagaggttcaaggaaatgaaagaaatgcaaagcagca 911 Query: 750 acagtggcaaccgtgatgataggcagaaacgtgagcaacagcgagaagagaaggagctgg 809 ||| ||| ||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct: 912 gcagcagcagccgtgatgacaggcagaaacgtgagcagcaacgagaagagaaggagctgg 971 Query: 810 caaaatttgcccaactggcagatgctcatcgaaagcagcagaaagagaagcaagaacaac 869 |||||||||| ||||| || ||||||||| ||||||||||| | |||||||||||| | Sbjct: 972 caaaatttgctcaacttgctgatgctcatagaaagcagcagcagcagaagcaagaaccat 1031 Query: 870 cagagatctcaggagatcaagctacgtcgaagaacttgccgaccccgggcaatcaggatc 929 |||||| |||| ||| | ||| |||||||||||| | ||| |||||||||| Sbjct: 1032 cagagagctcatcagagagaattacaatgaagaacttgcctaacccttcaaatcaggatc 1091 Query: 930 agcgtcgaacattgaagtttggcttctccaagatgaccccttccaaggcgcctgttggca 989 ||||| ||| |||||||||||||||||||| ||| | ||||||||||| || ||||||| Sbjct: 1092 agcgtaaaaccttgaagtttggcttctccaaaatggctccttccaaggctccagttggca 1151 Query: 990 acatgagcaagaaaccaaagattgc 1014 | | ||||||||||| ||| |||| Sbjct: 1152 atgtaagcaagaaacctaaggttgc 1176 Score = 274 bits (138), Expect = 8e-70 Identities = 251/288 (87%), Gaps = 3/288 (1%) Strand = Plus / Plus Query: 286 ggagaacctggacacggaggggctggagcaggcctccgtcgacacgcagctcgcctcctc 345 ||||||||| || |||||||||||||||||||| ||||| |||||||||||| ||||||| Sbjct: 236 ggagaacctcgagacggaggggctggagcaggcgtccgttgacacgcagctcacctcctc 295 Query: 346 caacgtcggcttcaggcttctgcagaagatgggctggaagtccggcaagggcctcggcaa 405 ||||||||| |||||||| || ||||||||||| |||||| |||||||| |||||||| Sbjct: 296 caacgtcggattcaggctgctccagaagatggggtggaag---ggcaaggggctcggcaa 352 Query: 406 gaacgagcaaggtatactagagcccataaaagctggtatcagggatgcaaaactaggagt 465 |||||||||||||||| |||||| ||||||||||||||||| ||||||||| | || || Sbjct: 353 gaacgagcaaggtataacagagccaataaaagctggtatcagagatgcaaaattgggtgt 412 Query: 466 ggggaagcaagagcaggatgacttcttcacagctgaggacaatgtacaaagaaagagatt 525 ||||||||||||||| ||||||||||||||| | || || ||||| ||||| | || ||| Sbjct: 413 ggggaagcaagagcaagatgacttcttcacatcagaagataatgtgcaaaggaggaaatt 472 Query: 526 aaatgttgaacttgaggagaccgaagagcatattaagaagcgtgaggt 573 ||| | || ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 473 aaacatagagcttgaggagactgaagaacatataaagaagcgcgaggt 520
>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06, complete sequence Length = 134001 Score = 168 bits (85), Expect = 4e-38 Identities = 123/135 (91%), Gaps = 3/135 (2%) Strand = Plus / Minus Query: 287 gagaacctggacacggaggggctggagcaggcctccgtcgacacgcagctcgcctcctcc 346 ||||| || ||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct: 27466 gagaatctcgacacggaggggctggagcaggcgtccgtcgacacgcagctcacctcctcc 27407 Query: 347 aacgtcggcttcaggcttctgcagaagatgggctggaagtccggcaagggcctcggcaag 406 ||| |||| |||||||| || ||||||||||| |||||| |||||||||||||||||| Sbjct: 27406 aacatcggattcaggctgctccagaagatggggtggaag---ggcaagggcctcggcaag 27350 Query: 407 aacgagcaaggtata 421 ||||||||||||||| Sbjct: 27349 aacgagcaaggtata 27335
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 168 bits (85), Expect = 4e-38 Identities = 123/135 (91%), Gaps = 3/135 (2%) Strand = Plus / Minus Query: 287 gagaacctggacacggaggggctggagcaggcctccgtcgacacgcagctcgcctcctcc 346 ||||| || ||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct: 7749880 gagaatctcgacacggaggggctggagcaggcgtccgtcgacacgcagctcacctcctcc 7749821 Query: 347 aacgtcggcttcaggcttctgcagaagatgggctggaagtccggcaagggcctcggcaag 406 ||| |||| |||||||| || ||||||||||| |||||| |||||||||||||||||| Sbjct: 7749820 aacatcggattcaggctgctccagaagatggggtggaag---ggcaagggcctcggcaag 7749764 Query: 407 aacgagcaaggtata 421 ||||||||||||||| Sbjct: 7749763 aacgagcaaggtata 7749749
>gb|AC132487.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0499F10, complete sequence Length = 75032 Score = 168 bits (85), Expect = 4e-38 Identities = 123/135 (91%), Gaps = 3/135 (2%) Strand = Plus / Minus Query: 287 gagaacctggacacggaggggctggagcaggcctccgtcgacacgcagctcgcctcctcc 346 ||||| || ||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct: 60388 gagaatctcgacacggaggggctggagcaggcgtccgtcgacacgcagctcacctcctcc 60329 Query: 347 aacgtcggcttcaggcttctgcagaagatgggctggaagtccggcaagggcctcggcaag 406 ||| |||| |||||||| || ||||||||||| |||||| |||||||||||||||||| Sbjct: 60328 aacatcggattcaggctgctccagaagatggggtggaag---ggcaagggcctcggcaag 60272 Query: 407 aacgagcaaggtata 421 ||||||||||||||| Sbjct: 60271 aacgagcaaggtata 60257
>emb|CR855036.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0112G01, complete sequence Length = 86318 Score = 163 bits (82), Expect = 2e-36 Identities = 147/168 (87%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 254 gagttccggctaccgaggggccaccgtccggtggagaacctggacacggaggggctggag 313 ||||||||||| || | | ||||||| || ||||||||| || ||||||||||||||| Sbjct: 62250 gagttccggctgcccatgagccaccgccccacggagaacctcgagacggaggggctggag 62309 Query: 314 caggcctccgtcgacacgcagctcgcctcctccaacgtcggcttcaggcttctgcagaag 373 ||||| ||||| |||||||||||| |||||||||||||||| |||||||| || |||||| Sbjct: 62310 caggcgtccgttgacacgcagctcacctcctccaacgtcggattcaggctgctccagaag 62369 Query: 374 atgggctggaagtccggcaagggcctcggcaagaacgagcaaggtata 421 ||||| |||||| |||||||| |||||||||||||||||||||||| Sbjct: 62370 atggggtggaag---ggcaaggggctcggcaagaacgagcaaggtata 62414 Score = 145 bits (73), Expect = 5e-31 Identities = 103/113 (91%) Strand = Plus / Plus Query: 714 agaggttcaaggaaatgaaagagatgcaaagcggcaacagtggcaaccgtgatgataggc 773 |||||||||||||||||||||| ||||||||| ||| ||| ||| ||||||||| |||| Sbjct: 64173 agaggttcaaggaaatgaaagaaatgcaaagcagcagcagcagcagccgtgatgacaggc 64232 Query: 774 agaaacgtgagcaacagcgagaagagaaggagctggcaaaatttgcccaactg 826 ||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct: 64233 agaaacgtgagcagcaacgagaagagaaggagctggcaaaatttgctcaactg 64285 Score = 125 bits (63), Expect = 5e-25 Identities = 135/159 (84%) Strand = Plus / Plus Query: 415 aggtatactagagcccataaaagctggtatcagggatgcaaaactaggagtggggaagca 474 ||||||| |||||| ||||||||||||||||| ||||||||| | || ||||||||||| Sbjct: 63512 aggtataacagagccaataaaagctggtatcagagatgcaaaattgggtgtggggaagca 63571 Query: 475 agagcaggatgacttcttcacagctgaggacaatgtacaaagaaagagattaaatgttga 534 |||||| ||||||||||||||| | || || ||||| ||||| | || |||||| | || Sbjct: 63572 agagcaagatgacttcttcacatcagaagataatgtgcaaaggaggaaattaaacataga 63631 Query: 535 acttgaggagaccgaagagcatattaagaagcgtgaggt 573 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 63632 gcttgaggagactgaagaacatataaagaagcgcgaggt 63670 Score = 123 bits (62), Expect = 2e-24 Identities = 125/146 (85%) Strand = Plus / Plus Query: 570 aggtcacagcagaacgtgagcagaaaatccgcagtgaggttaaggagatacagaagacgt 629 |||||| ||||||||| ||||||||||| || |||||||| ||||||||||||||| || Sbjct: 63882 aggtcatagcagaacgcgagcagaaaatacgtagtgaggtcaaggagatacagaaggtgt 63941 Query: 630 tcttttgcagcctctgtaataagcaatacaagcttgcatatgaatttgagagtcatctaa 689 |||||||||| |||||||| ||||| ||||| | || ||||||||||| |||| | | Sbjct: 63942 tcttttgcagtctctgtaacaagcagtacaaattggcgcatgaatttgagtctcatttga 64001 Query: 690 gctcatatgaccataatcataggaag 715 ||||||| ||||| |||||||||||| Sbjct: 64002 gctcatacgaccacaatcataggaag 64027 Score = 67.9 bits (34), Expect = 1e-07 Identities = 52/58 (89%) Strand = Plus / Plus Query: 920 aatcaggatcagcgtcgaacattgaagtttggcttctccaagatgaccccttccaagg 977 ||||||||||||||| ||| |||||||||||||||||||| ||| | |||||||||| Sbjct: 64489 aatcaggatcagcgtaaaaccttgaagtttggcttctccaaaatggctccttccaagg 64546
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 163 bits (82), Expect = 2e-36 Identities = 147/168 (87%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 254 gagttccggctaccgaggggccaccgtccggtggagaacctggacacggaggggctggag 313 ||||||||||| || | | ||||||| || ||||||||| || ||||||||||||||| Sbjct: 897191 gagttccggctgcccatgagccaccgccccacggagaacctcgagacggaggggctggag 897250 Query: 314 caggcctccgtcgacacgcagctcgcctcctccaacgtcggcttcaggcttctgcagaag 373 ||||| ||||| |||||||||||| |||||||||||||||| |||||||| || |||||| Sbjct: 897251 caggcgtccgttgacacgcagctcacctcctccaacgtcggattcaggctgctccagaag 897310 Query: 374 atgggctggaagtccggcaagggcctcggcaagaacgagcaaggtata 421 ||||| |||||| |||||||| |||||||||||||||||||||||| Sbjct: 897311 atggggtggaag---ggcaaggggctcggcaagaacgagcaaggtata 897355 Score = 145 bits (73), Expect = 5e-31 Identities = 103/113 (91%) Strand = Plus / Plus Query: 714 agaggttcaaggaaatgaaagagatgcaaagcggcaacagtggcaaccgtgatgataggc 773 |||||||||||||||||||||| ||||||||| ||| ||| ||| ||||||||| |||| Sbjct: 899113 agaggttcaaggaaatgaaagaaatgcaaagcagcagcagcagcagccgtgatgacaggc 899172 Query: 774 agaaacgtgagcaacagcgagaagagaaggagctggcaaaatttgcccaactg 826 ||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct: 899173 agaaacgtgagcagcaacgagaagagaaggagctggcaaaatttgctcaactg 899225 Score = 143 bits (72), Expect = 2e-30 Identities = 96/104 (92%) Strand = Plus / Plus Query: 253 ggagttccggctaccgaggggccaccgtccggtggagaacctggacacggaggggctgga 312 |||||||||||| |||| | ||||||||||| ||||||||| |||||||||| |||||| Sbjct: 876578 ggagttccggctgccgatgagccaccgtccgacggagaacctcgacacggaggtgctgga 876637 Query: 313 gcaggcctccgtcgacacgcagctcgcctcctccaacgtcggct 356 ||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 876638 gcaggcctccgtcgacacgcagctcacctcctccaacgtcggct 876681 Score = 125 bits (63), Expect = 5e-25 Identities = 135/159 (84%) Strand = Plus / Plus Query: 415 aggtatactagagcccataaaagctggtatcagggatgcaaaactaggagtggggaagca 474 ||||||| |||||| ||||||||||||||||| ||||||||| | || ||||||||||| Sbjct: 898452 aggtataacagagccaataaaagctggtatcagagatgcaaaattgggtgtggggaagca 898511 Query: 475 agagcaggatgacttcttcacagctgaggacaatgtacaaagaaagagattaaatgttga 534 |||||| ||||||||||||||| | || || ||||| ||||| | || |||||| | || Sbjct: 898512 agagcaagatgacttcttcacatcagaagataatgtgcaaaggaggaaattaaacataga 898571 Query: 535 acttgaggagaccgaagagcatattaagaagcgtgaggt 573 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 898572 gcttgaggagactgaagaacatataaagaagcgcgaggt 898610 Score = 123 bits (62), Expect = 2e-24 Identities = 125/146 (85%) Strand = Plus / Plus Query: 570 aggtcacagcagaacgtgagcagaaaatccgcagtgaggttaaggagatacagaagacgt 629 |||||| ||||||||| ||||||||||| || |||||||| ||||||||||||||| || Sbjct: 898822 aggtcatagcagaacgcgagcagaaaatacgtagtgaggtcaaggagatacagaaggtgt 898881 Query: 630 tcttttgcagcctctgtaataagcaatacaagcttgcatatgaatttgagagtcatctaa 689 |||||||||| |||||||| ||||| ||||| | || ||||||||||| |||| | | Sbjct: 898882 tcttttgcagtctctgtaacaagcagtacaaattggcgcatgaatttgagtctcatttga 898941 Query: 690 gctcatatgaccataatcataggaag 715 ||||||| ||||| |||||||||||| Sbjct: 898942 gctcatacgaccacaatcataggaag 898967 Score = 67.9 bits (34), Expect = 1e-07 Identities = 52/58 (89%) Strand = Plus / Plus Query: 920 aatcaggatcagcgtcgaacattgaagtttggcttctccaagatgaccccttccaagg 977 ||||||||||||||| ||| |||||||||||||||||||| ||| | |||||||||| Sbjct: 899429 aatcaggatcagcgtaaaaccttgaagtttggcttctccaaaatggctccttccaagg 899486
>emb|AL606992.3|OSJN00116 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L13, complete sequence Length = 143386 Score = 163 bits (82), Expect = 2e-36 Identities = 147/168 (87%), Gaps = 3/168 (1%) Strand = Plus / Plus Query: 254 gagttccggctaccgaggggccaccgtccggtggagaacctggacacggaggggctggag 313 ||||||||||| || | | ||||||| || ||||||||| || ||||||||||||||| Sbjct: 117852 gagttccggctgcccatgagccaccgccccacggagaacctcgagacggaggggctggag 117911 Query: 314 caggcctccgtcgacacgcagctcgcctcctccaacgtcggcttcaggcttctgcagaag 373 ||||| ||||| |||||||||||| |||||||||||||||| |||||||| || |||||| Sbjct: 117912 caggcgtccgttgacacgcagctcacctcctccaacgtcggattcaggctgctccagaag 117971 Query: 374 atgggctggaagtccggcaagggcctcggcaagaacgagcaaggtata 421 ||||| |||||| |||||||| |||||||||||||||||||||||| Sbjct: 117972 atggggtggaag---ggcaaggggctcggcaagaacgagcaaggtata 118016 Score = 145 bits (73), Expect = 5e-31 Identities = 103/113 (91%) Strand = Plus / Plus Query: 714 agaggttcaaggaaatgaaagagatgcaaagcggcaacagtggcaaccgtgatgataggc 773 |||||||||||||||||||||| ||||||||| ||| ||| ||| ||||||||| |||| Sbjct: 119774 agaggttcaaggaaatgaaagaaatgcaaagcagcagcagcagcagccgtgatgacaggc 119833 Query: 774 agaaacgtgagcaacagcgagaagagaaggagctggcaaaatttgcccaactg 826 ||||||||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct: 119834 agaaacgtgagcagcaacgagaagagaaggagctggcaaaatttgctcaactg 119886 Score = 143 bits (72), Expect = 2e-30 Identities = 96/104 (92%) Strand = Plus / Plus Query: 253 ggagttccggctaccgaggggccaccgtccggtggagaacctggacacggaggggctgga 312 |||||||||||| |||| | ||||||||||| ||||||||| |||||||||| |||||| Sbjct: 97239 ggagttccggctgccgatgagccaccgtccgacggagaacctcgacacggaggtgctgga 97298 Query: 313 gcaggcctccgtcgacacgcagctcgcctcctccaacgtcggct 356 ||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 97299 gcaggcctccgtcgacacgcagctcacctcctccaacgtcggct 97342 Score = 125 bits (63), Expect = 5e-25 Identities = 135/159 (84%) Strand = Plus / Plus Query: 415 aggtatactagagcccataaaagctggtatcagggatgcaaaactaggagtggggaagca 474 ||||||| |||||| ||||||||||||||||| ||||||||| | || ||||||||||| Sbjct: 119113 aggtataacagagccaataaaagctggtatcagagatgcaaaattgggtgtggggaagca 119172 Query: 475 agagcaggatgacttcttcacagctgaggacaatgtacaaagaaagagattaaatgttga 534 |||||| ||||||||||||||| | || || ||||| ||||| | || |||||| | || Sbjct: 119173 agagcaagatgacttcttcacatcagaagataatgtgcaaaggaggaaattaaacataga 119232 Query: 535 acttgaggagaccgaagagcatattaagaagcgtgaggt 573 ||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 119233 gcttgaggagactgaagaacatataaagaagcgcgaggt 119271 Score = 123 bits (62), Expect = 2e-24 Identities = 125/146 (85%) Strand = Plus / Plus Query: 570 aggtcacagcagaacgtgagcagaaaatccgcagtgaggttaaggagatacagaagacgt 629 |||||| ||||||||| ||||||||||| || |||||||| ||||||||||||||| || Sbjct: 119483 aggtcatagcagaacgcgagcagaaaatacgtagtgaggtcaaggagatacagaaggtgt 119542 Query: 630 tcttttgcagcctctgtaataagcaatacaagcttgcatatgaatttgagagtcatctaa 689 |||||||||| |||||||| ||||| ||||| | || ||||||||||| |||| | | Sbjct: 119543 tcttttgcagtctctgtaacaagcagtacaaattggcgcatgaatttgagtctcatttga 119602 Query: 690 gctcatatgaccataatcataggaag 715 ||||||| ||||| |||||||||||| Sbjct: 119603 gctcatacgaccacaatcataggaag 119628 Score = 67.9 bits (34), Expect = 1e-07 Identities = 52/58 (89%) Strand = Plus / Plus Query: 920 aatcaggatcagcgtcgaacattgaagtttggcttctccaagatgaccccttccaagg 977 ||||||||||||||| ||| |||||||||||||||||||| ||| | |||||||||| Sbjct: 120090 aatcaggatcagcgtaaaaccttgaagtttggcttctccaaaatggctccttccaagg 120147
>dbj|AK243193.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100039M09, full insert sequence Length = 1610 Score = 159 bits (80), Expect = 3e-35 Identities = 118/130 (90%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 287 gagaacctggacacggaggggctggagcaggcctccgtcgacacgcagctcgcctcctcc 346 ||||| || ||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct: 915 gagaatctcgacacggaggggctggagcaggcgtccgtcgacacgcagctcacctcctcc 974 Query: 347 aacgtcggcttcaggcttctgcagaagatgggctggaagtccggcaagggcctcggcaag 406 ||| |||| |||||||| || ||||||||||| |||||| |||||||||||||||||| Sbjct: 975 aacatcggattcaggctgctccagaagatggggtggaag---ggcaagggcctcggcaag 1031 Query: 407 aacgagcaag 416 |||||||||| Sbjct: 1032 aacgagcaag 1041
>ref|NM_001061508.1| Oryza sativa (japonica cultivar-group) Os05g0229000 (Os05g0229000) mRNA, complete cds Length = 213 Score = 159 bits (80), Expect = 3e-35 Identities = 118/130 (90%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 287 gagaacctggacacggaggggctggagcaggcctccgtcgacacgcagctcgcctcctcc 346 ||||| || ||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct: 19 gagaatctcgacacggaggggctggagcaggcgtccgtcgacacgcagctcacctcctcc 78 Query: 347 aacgtcggcttcaggcttctgcagaagatgggctggaagtccggcaagggcctcggcaag 406 ||| |||| |||||||| || ||||||||||| |||||| |||||||||||||||||| Sbjct: 79 aacatcggattcaggctgctccagaagatggggtggaag---ggcaagggcctcggcaag 135 Query: 407 aacgagcaag 416 |||||||||| Sbjct: 136 aacgagcaag 145
>gb|AF069838.1| Ice core clone 146-13 18S ribosomal RNA gene, partial sequence Length = 301 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 54 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 112
>gb|AF069839.1| Ice core clone 146-16 18S ribosomal RNA gene, partial sequence Length = 301 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 54 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 112
>gb|AY552749.1| Hordeum vulgare subsp. vulgare 18S ribosomal RNA gene, partial sequence Length = 1014 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 318
>gb|AY357922.1| Triticum aestivum cultivar Giza 164 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357921.1| Triticum aestivum cultivar Gemmieza 5 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357920.1| Triticum aestivum cultivar Beni Suef 3 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357919.1| Triticum aestivum cultivar Gemmieza 9 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357918.1| Triticum aestivum cultivar Sakha 61 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357917.1| Triticum aestivum cultivar Sakha 69 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357916.1| Triticum aestivum cultivar Sakha 93 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357915.1| Triticum aestivum cultivar Gemmieza 7 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357914.1| Triticum aestivum cultivar Giza 168 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357913.1| Triticum aestivum cultivar Sohag 3 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357912.1| Triticum aestivum cultivar Giza 165 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AY357911.1| Triticum aestivum cultivar Sids 1 18S ribosomal RNA gene, partial sequence Length = 561 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 197
>gb|AF534514.1| Uncultured Triticeae 18S ribosomal RNA gene, partial sequence Length = 117 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 79
>gb|AY049040.1| Triticum aestivum 18S ribosomal RNA gene, partial sequence Length = 1805 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 651 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 709
>gb|AF168852.1|AF168852 Hordeum jubatum 18S small subunit ribosomal RNA gene, complete sequence Length = 1745 Score = 117 bits (59), Expect = 1e-22 Identities = 59/59 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 632 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 690
>emb|AJ272181.1|TAE272181 Triticum aestivum 18S rRNA gene for 18S ribosomal RNA, strain MV-15 Length = 1764 Score = 109 bits (55), Expect = 3e-20 Identities = 58/59 (98%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggcatcgcgctcc 113 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 636 gccggtccgcctcacggcgagcaccgacctactcgacccttcagccggcatcgcgctcc 694
>gb|AY494505.1| Uncultured eukaryote clone 1874 sample 4/01/9.2 18S ribosomal RNA gene, partial sequence Length = 510 Score = 89.7 bits (45), Expect = 3e-14 Identities = 48/49 (97%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 18 gccggtccgcctcacggcgagcaccgacctactcgacccttcagccggc 66
>gb|AY494500.1| Uncultured eukaryote clone 1869 sample 4/01/9.2 18S ribosomal RNA gene, partial sequence Length = 508 Score = 89.7 bits (45), Expect = 3e-14 Identities = 48/49 (97%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 18 gccggtccgcctcacggcgagcaccgacctactcgacccttcagccggc 66
>gb|AY494490.1| Uncultured eukaryote clone 1775 sample 4/01/9.2 18S ribosomal RNA gene, partial sequence Length = 508 Score = 89.7 bits (45), Expect = 3e-14 Identities = 48/49 (97%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 18 gccggtccgcctcacggcgagcaccgacctactcgacccttcagccggc 66
>gb|AY494420.1| Uncultured eukaryote clone b07 sample 4/01/9.2 18S ribosomal RNA gene, partial sequence Length = 508 Score = 89.7 bits (45), Expect = 3e-14 Identities = 48/49 (97%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 18 gccggtccgcctcacggcgagcaccgacctactcgacccttcagccggc 66
>gb|AY494409.1| Uncultured eukaryote clone a06 sample 4/01/9.2 18S ribosomal RNA gene, partial sequence Length = 508 Score = 89.7 bits (45), Expect = 3e-14 Identities = 48/49 (97%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 18 gccggtccgcctcacggcgagcaccgacctactcgacccttcagccggc 66
>gb|AY494406.1| Uncultured eukaryote clone a03 sample 4/01/9.2 18S ribosomal RNA gene, partial sequence Length = 508 Score = 89.7 bits (45), Expect = 3e-14 Identities = 48/49 (97%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 18 gccggtccgcctcacggcgagcaccgacctactcgacccttcagccggc 66
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 89.7 bits (45), Expect = 3e-14 Identities = 48/49 (97%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 28738505 gccggtccgcctcacggcgagcaccgacctactcgacccttctgccggc 28738553 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 cgcagctcgcctcctccaacgtcgg 354 |||||||||||||||||||| |||| Sbjct: 6196439 cgcagctcgcctcctccaacctcgg 6196415 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 144 ccgaccacggcggcatcggcagcggcagc 172 ||||| ||||||||| ||||||||||||| Sbjct: 33462163 ccgacgacggcggcagcggcagcggcagc 33462191
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 89.7 bits (45), Expect = 3e-14 Identities = 48/49 (97%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 55078 gccggtccgcctcacggcgagcaccgacctactcgacccttctgccggc 55126
>gb|AY494510.1| Uncultured eukaryote clone 1879 sample 4/01/9.2 18S ribosomal RNA gene, partial sequence Length = 511 Score = 85.7 bits (43), Expect = 4e-13 Identities = 46/47 (97%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccg 101 |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 20 gccggtccgcctcacggcgagcaccgacctactcgacccttcagccg 66
>dbj|AK242818.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090063J18, full insert sequence Length = 2014 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 376 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 424
>dbj|AP009051.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, fosmid clone:OSJNOa063K24, complete sequence Length = 30177 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 8652 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 8700 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 17078 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 17126 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 25497 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 25545
>gb|DQ423763.1| Uncultured eukaryote clone SAWY467 18S ribosomal RNA gene, partial sequence Length = 969 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 149 gccggtccgcctcacggcgagcaccgaccaactcgacccttcagccggc 197
>gb|DQ423696.1| Uncultured eukaryote clone SAWY397 18S ribosomal RNA gene, partial sequence Length = 943 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 119 gccggtccgcctcacggcgagcaccgaccaactcgacccttcagccggc 167
>gb|DQ423689.1| Uncultured eukaryote clone SAWY390 18S ribosomal RNA gene, partial sequence Length = 940 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 118 gccggtccgcctcacggcgagcaccgaccaactcgacccttcagccggc 166
>dbj|AP008225.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, fosmid clone:OSJNOa109J19 Length = 30481 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 3553 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 3601 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 11481 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 11529 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 19409 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 19457 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 27337 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 27385
>gb|AY846367.1| Lolium multiflorum 18S ribosomal RNA, partial sequence Length = 1764 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 636 gccggtccgcctcacggcgagcaccgaccaactcgacccttcagccggc 684
>gb|AY120865.1| Oryza longistaminata small subunit ribosomal RNA gene, partial sequence Length = 1793 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 638 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 686
>dbj|AP008245.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0013K10 Length = 129118 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 3281 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 3329 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 11209 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 11257 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 19137 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 19185 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 27065 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 27113 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 34993 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 35041
>gb|AF168844.1|AF168844 Festuca rubra 18S small subunit ribosomal RNA gene, complete sequence Length = 1745 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 632 gccggtccgcctcacggcgagcaccgaccaactcgacccttcagccggc 680
>dbj|AK119175.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F05, full insert sequence Length = 967 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 183 gccggtccgcctcacggcgagcaccgacctgctcgacccttctgccggc 231
>gb|AY897976.1| Uncultured organism clone MC0508c6 small subunit ribosomal RNA gene, partial sequence Length = 1014 Score = 81.8 bits (41), Expect = 6e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct: 17 gccggtccgcctcacggcgagcaccgaccaactcgacccttcagccggc 65
>emb|CT832857.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042F09, full insert sequence Length = 739 Score = 75.8 bits (38), Expect = 4e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttc 96 |||||||||||||||||||||||||||||| ||||||||||| Sbjct: 53 gccggtccgcctcacggcgagcaccgacctgctcgacccttc 94
>gb|AY494503.1| Uncultured eukaryote clone 1872 sample 4/01/9.2 18S ribosomal RNA gene, partial sequence Length = 508 Score = 73.8 bits (37), Expect = 2e-09 Identities = 37/37 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgac 91 ||||||||||||||||||||||||||||||||||||| Sbjct: 18 gccggtccgcctcacggcgagcaccgacctactcgac 54
>gb|BT016702.1| Zea mays clone Contig535 mRNA sequence Length = 1200 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct: 642 gccggtccgcctcacggcgagaaccgaccggctcgacccttctgccggc 690
>gb|AY435212.1| Hevea brasiliensis 18S ribosomal RNA gene, partial sequence Length = 1695 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||| |||||||||| ||||||||||| |||||| Sbjct: 657 gccggtccgcctcacggcaggcaccgacctgctcgacccttctgccggc 705
>gb|AF207006.1| Restio tetraphyllus 18S ribosomal RNA gene, complete sequence Length = 1740 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||| |||||||||||||||| | ||||||||| |||||| Sbjct: 631 gccggtccgcctctcggcgagcaccgacctccccgacccttctgccggc 679
>gb|AF250048.1|AF250048 Zea mays WD-repeat protein RBAP2 (rbap2) gene, partial cds Length = 851 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct: 112 gccggtccgcctcacggcgagaaccgaccggctcgacccttctgccggc 64
>emb|X00755.1|OSRRN17S Rice gene for 17S ribosomal RNA Length = 1812 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||| |||||||||| ||||||||||| |||||| Sbjct: 657 gccggtccgcctcacggcaggcaccgacctgctcgacccttctgccggc 705
>gb|AF069219.1|AF069219 Elegia sp. Hahn 6994 18S small subunit ribosomal RNA gene, complete sequence Length = 1753 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||| |||||||||||||||| | ||||||||| |||||| Sbjct: 636 gccggtccgcctctcggcgagcaccgacctccccgacccttctgccggc 684
>gb|AF069218.1|AF069218 Oryza sativa 18S small subunit ribosomal RNA gene, complete sequence Length = 1754 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||||||||||| |||||||||| ||||||||||| |||||| Sbjct: 637 gccggtccgcctcacggcaggcaccgacctgctcgacccttctgccggc 685
>gb|U42796.1|ZMU42796 Zea mays 18S ribosomal RNA gene, partial sequence Length = 1742 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||||||||| ||||||| ||||||||||| |||||| Sbjct: 635 gccggtccgcctcacggcgagaaccgaccggctcgacccttctgccggc 683
>emb|X59455.1|AP18SR A.pratensis 18S ribosomal RNA, partial sequence Length = 247 Score = 60.0 bits (30), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 65 ctcacggcgagcaccgacctactcgacccttcggccg 101 |||| ||||||||||||||||||||||||||| |||| Sbjct: 161 ctcanggcgagcaccgacctactcgacccttcagccg 197
>gb|AF206944.1| Juncus effusus 18S ribosomal RNA gene, complete sequence Length = 1735 Score = 58.0 bits (29), Expect = 9e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgaccctt 95 ||||||||||||||||| | |||||||||||| |||||||| Sbjct: 631 gccggtccgcctcacggtgtgcaccgacctacccgaccctt 671
>gb|AF168855.1|AF168855 Joinvillea ascendens 18S small subunit ribosomal RNA gene, complete sequence Length = 1754 Score = 58.0 bits (29), Expect = 9e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||| ||||||||||||||| | ||||||||| |||||| Sbjct: 637 gccggtccgcctctcggcgagcaccgaccgccccgacccttctgccggc 685
>gb|M35382.1|RICRGC1 Rice 17S rRNA gene Length = 145 Score = 52.0 bits (26), Expect = 0.006 Identities = 35/38 (92%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacc 92 |||||||||||||||||| |||||||||| ||||||| Sbjct: 108 gccggtccgcctcacggcaggcaccgacctgctcgacc 145
>gb|AY187935.1| Tillandsia fasciculata microsatellite SLTF-p2p19 sequence Length = 481 Score = 50.1 bits (25), Expect = 0.023 Identities = 34/37 (91%) Strand = Plus / Minus Query: 1032 tcttcggaaacgacagcgatgaggatgcatgatcttc 1068 |||| ||||| ||||||||||||||| |||||||||| Sbjct: 195 tctttggaaatgacagcgatgaggattcatgatcttc 159
>gb|AF206913.1| Flagellaria indica 18S ribosomal RNA gene, complete sequence Length = 1741 Score = 50.1 bits (25), Expect = 0.023 Identities = 43/49 (87%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 |||||||||| || ||||||||||||||| | ||||||||| |||||| Sbjct: 633 gccggtccgcttctcggcgagcaccgaccgccccgacccttctgccggc 681
>ref|NM_001073809.1| Oryza sativa (japonica cultivar-group) Os12g0615800 (Os12g0615800) mRNA, complete cds Length = 2777 Score = 48.1 bits (24), Expect = 0.089 Identities = 24/24 (100%) Strand = Plus / Plus Query: 398 ctcggcaagaacgagcaaggtata 421 |||||||||||||||||||||||| Sbjct: 668 ctcggcaagaacgagcaaggtata 691
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 48.1 bits (24), Expect = 0.089 Identities = 24/24 (100%) Strand = Plus / Minus Query: 398 ctcggcaagaacgagcaaggtata 421 |||||||||||||||||||||||| Sbjct: 26159730 ctcggcaagaacgagcaaggtata 26159707
>dbj|AB018160.1| Candida entomophila gene for 18S rRNA, partial sequence Length = 1757 Score = 48.1 bits (24), Expect = 0.089 Identities = 24/24 (100%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcac 78 |||||||||||||||||||||||| Sbjct: 646 gccggtccgcctcacggcgagcac 669
>dbj|AK073946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071N19, full insert sequence Length = 2778 Score = 48.1 bits (24), Expect = 0.089 Identities = 24/24 (100%) Strand = Plus / Plus Query: 398 ctcggcaagaacgagcaaggtata 421 |||||||||||||||||||||||| Sbjct: 669 ctcggcaagaacgagcaaggtata 692
>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144241 Score = 48.1 bits (24), Expect = 0.089 Identities = 24/24 (100%) Strand = Plus / Minus Query: 398 ctcggcaagaacgagcaaggtata 421 |||||||||||||||||||||||| Sbjct: 49968 ctcggcaagaacgagcaaggtata 49945
>gb|AY572309.1| Gymnotheca involucrata 18S ribosomal RNA gene, partial sequence; chloroplast Length = 1708 Score = 46.1 bits (23), Expect = 0.35 Identities = 41/47 (87%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||| | ||||||| | ||||| |||||| |||||| Sbjct: 613 cggtccgcctcacggtgtgcaccgagcgactcgtcccttctgccggc 659
>gb|AY572308.1| Gymnotheca chinensis 18S ribosomal RNA gene, partial sequence; chloroplast Length = 1699 Score = 46.1 bits (23), Expect = 0.35 Identities = 41/47 (87%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||| | ||||||| | ||||| |||||| |||||| Sbjct: 613 cggtccgcctcacggtgtgcaccgagcgactcgtcccttctgccggc 659
>gb|AC159266.3| Mus musculus BAC clone RP24-64D24 from chromosome 8, complete sequence Length = 212727 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Minus Query: 183 cggcctctgggaaggaggctggg 205 ||||||||||||||||||||||| Sbjct: 95365 cggcctctgggaaggaggctggg 95343
>gb|AC091333.6| Mus musculus chromosome 7, clone RP23-325M1, complete sequence Length = 192111 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 499 tgaggacaatgtacaaagaaaga 521 ||||||||||||||||||||||| Sbjct: 27013 tgaggacaatgtacaaagaaaga 27035
>gb|AY494539.1| Uncultured eukaryote clone 1517 sample 1/02/0.5 18S ribosomal RNA gene, partial sequence Length = 509 Score = 46.1 bits (23), Expect = 0.35 Identities = 35/39 (89%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcaccgacctactcgacccttc 96 |||||||||||||| | | ||||||||| |||||||||| Sbjct: 21 ggtccgcctcacggtgtgaaccgacctattcgacccttc 59
>gb|AY032646.1| Saururus cernuus 18S ribosomal RNA gene, partial sequence Length = 1559 Score = 46.1 bits (23), Expect = 0.35 Identities = 41/47 (87%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||| | ||||||| | ||||| |||||| |||||| Sbjct: 480 cggtccgcctcacggtgtgcaccgagcgactcgtcccttctgccggc 526
>gb|AY032644.1| Gymnotheca involucrata 18S ribosomal RNA gene, partial sequence Length = 1554 Score = 46.1 bits (23), Expect = 0.35 Identities = 41/47 (87%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||| | ||||||| | ||||| |||||| |||||| Sbjct: 479 cggtccgcctcacggtgtgcaccgagcgactcgtcccttctgccggc 525
>gb|AY032643.1| Gymnotheca chinensis 18S ribosomal RNA gene, partial sequence Length = 1554 Score = 46.1 bits (23), Expect = 0.35 Identities = 41/47 (87%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||| | ||||||| | ||||| |||||| |||||| Sbjct: 479 cggtccgcctcacggtgtgcaccgagcgactcgtcccttctgccggc 525
>gb|U88088.2|PAU88088 Pseudomonas alcaligenes plasmid pRA2, complete sequence Length = 32743 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Minus Query: 842 aagcagcagaaagagaagcaaga 864 ||||||||||||||||||||||| Sbjct: 24788 aagcagcagaaagagaagcaaga 24766
>gb|AC138549.3| Mus musculus BAC clone RP23-173C1 from chromosome 7, complete sequence Length = 203651 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 499 tgaggacaatgtacaaagaaaga 521 ||||||||||||||||||||||| Sbjct: 26857 tgaggacaatgtacaaagaaaga 26879
>gb|AC036114.7| Homo sapiens chromosome 11, clone RP11-283H3, complete sequence Length = 159851 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 196 ggaggctggggcggatgaggaat 218 ||||||||||||||||||||||| Sbjct: 159158 ggaggctggggcggatgaggaat 159180
>gb|AC083755.10| Homo sapiens chromosome 11, clone RP11-175E18, complete sequence Length = 161755 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Minus Query: 196 ggaggctggggcggatgaggaat 218 ||||||||||||||||||||||| Sbjct: 160625 ggaggctggggcggatgaggaat 160603
>emb|AL606470.15| Mouse DNA sequence from clone RP23-293J11 on chromosome 11 Contains a Friedreich ataxia protein (Frda) pseudogene, complete sequence Length = 203970 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 478 gcaggatgacttcttcacagctg 500 ||||||||||||||||||||||| Sbjct: 146862 gcaggatgacttcttcacagctg 146884
>gb|AY952404.1| Cyperus alternifolius 18S ribosomal RNA gene, partial sequence Length = 1666 Score = 46.1 bits (23), Expect = 0.35 Identities = 41/47 (87%) Strand = Plus / Minus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccg 101 ||||||||||||||||| | | ||||||||| ||||||||| |||| Sbjct: 1077 gccggtccgcctcacggtgtgtaccgacctatccgacccttctgccg 1031
>gb|DQ310309.1| Uncultured marine eukaryote clone FV36_CilH9 small subunit ribosomal RNA gene, partial sequence Length = 1332 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcaccg 80 ||||||||||||||||||||||| Sbjct: 647 ggtccgcctcacggcgagcaccg 669
>emb|AJ866540.1| Uncultured eukaryote partial 18S rRNA gene, clone Passeiry1 Length = 870 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcacc 79 ||||||||||||||||||||||| Sbjct: 567 cggtccgcctcacggcgagcacc 589
>emb|AJ866539.1| Uncultured eukaryote partial 18S rRNA gene, clone Meurons3 Length = 870 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcacc 79 ||||||||||||||||||||||| Sbjct: 567 cggtccgcctcacggcgagcacc 589
>emb|AJ866535.1| Uncultured eukaryote partial 18S rRNA gene, clone Epeisses4 Length = 870 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcacc 79 ||||||||||||||||||||||| Sbjct: 567 cggtccgcctcacggcgagcacc 589
>gb|U42805.1|SCU42805 Saururus cernuus 18S ribosomal RNA gene, partial sequence Length = 1736 Score = 46.1 bits (23), Expect = 0.35 Identities = 41/47 (87%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||| | ||||||| | ||||| |||||| |||||| Sbjct: 634 cggtccgcctcacggtgtgcaccgagcgactcgtcccttctgccggc 680
>gb|AY289633.1| Heritiera littoralis 18S ribosomal RNA gene, partial sequence Length = 1670 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccg 80 ||||||||||||||||| |||||||| Sbjct: 595 gccggtccgcctcacggtgagcaccg 620
>gb|AY289632.1| Thespesia populnea 18S ribosomal RNA gene, partial sequence Length = 1668 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccg 80 ||||||||||||||||| |||||||| Sbjct: 594 gccggtccgcctcacggtgagcaccg 619
>gb|AY289631.1| Hibiscus tiliaceus 18S ribosomal RNA gene, partial sequence Length = 1669 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccg 80 ||||||||||||||||| |||||||| Sbjct: 595 gccggtccgcctcacggtgagcaccg 620
>gb|AY046689.1| Uncultured eukaryote isolate A1_E022 18S ribosomal RNA gene, partial sequence Length = 1186 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcac 78 |||||||||||||||||||||| Sbjct: 80 cggtccgcctcacggcgagcac 101
>gb|AY494504.1| Uncultured eukaryote clone 1873 sample 4/01/9.2 18S ribosomal RNA gene, partial sequence Length = 509 Score = 44.1 bits (22), Expect = 1.4 Identities = 37/42 (88%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttc 96 ||||||||||||||||| | | ||||||||| ||||||||| Sbjct: 18 gccggtccgcctcacggtgtgaaccgacctatccgacccttc 59
>gb|AC016588.9| Homo sapiens chromosome 19 clone CTD-3113P16, complete sequence Length = 144578 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1328 tgaggagccatggcaagctgtc 1349 |||||||||||||||||||||| Sbjct: 110887 tgaggagccatggcaagctgtc 110866
>gb|AC068896.9| Homo sapiens chromosome 10 clone RP11-464O2, complete sequence Length = 194905 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 848 cagaaagagaagcaagaacaac 869 |||||||||||||||||||||| Sbjct: 120436 cagaaagagaagcaagaacaac 120457
>emb|AL359707.18| Human DNA sequence from clone RP11-251A15 on chromosome 10 Contains a pseudogene similar to novel protein KIAA0887, the TNKS2 gene for TRF1-interacting ankyrin-related ADP-ribose polymerase 2, a signal recognition particle 9kD (SRP9) pseudogene and a CpG island, complete sequence Length = 142085 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 514 aagaaagagattaaatgttgaa 535 |||||||||||||||||||||| Sbjct: 119853 aagaaagagattaaatgttgaa 119874
>gb|AF207029.1| Sterculia recordiana 18S ribosomal RNA gene, complete sequence Length = 1751 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccg 80 ||||||||||||||||| |||||||| Sbjct: 632 gccggtccgcctcacggtgagcaccg 657
>gb|AF207009.1| Rhynchospora nervosa 18S ribosomal RNA gene, complete sequence Length = 1741 Score = 44.1 bits (22), Expect = 1.4 Identities = 37/42 (88%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttc 96 ||||||||||||||||| | | ||||||||| ||||||||| Sbjct: 632 gccggtccgcctcacggtgtgtaccgacctatccgacccttc 673
>gb|AF206975.1| Ochroma pyramidale 18S ribosomal RNA gene, complete sequence Length = 1789 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccg 80 ||||||||||||||||| |||||||| Sbjct: 636 gccggtccgcctcacggtgagcaccg 661
>gb|AF206921.1| Grewia occidentalis 18S ribosomal RNA gene, complete sequence Length = 1784 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccg 80 ||||||||||||||||| |||||||| Sbjct: 631 gccggtccgcctcacggtgagcaccg 656
>gb|AC108018.3| Homo sapiens BAC clone RP11-4E12 from 4, complete sequence Length = 130841 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1363 catggctcttttgttggggcacattt 1388 ||||||||| |||||||||||||||| Sbjct: 63268 catggctctgttgttggggcacattt 63293
>gb|AC093165.5| Homo sapiens BAC clone RP11-1255P17 from 2, complete sequence Length = 163772 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1287 cttgtatttgcatatcacagag 1308 |||||||||||||||||||||| Sbjct: 46628 cttgtatttgcatatcacagag 46649
>gb|AF168845.1|AF168845 Flagellaria indica 18S small subunit ribosomal RNA gene, complete sequence Length = 1747 Score = 44.1 bits (22), Expect = 1.4 Identities = 40/46 (86%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcaccgacctactcgacccttcggccgg 102 ||||||||||| ||| ||||||||||| | ||||||||| ||||| Sbjct: 637 cggtccgcctctcggagagcaccgaccgccccgacccttctgccgg 682
>gb|AF530542.1| Uncultured basidiomycete clone AT9-6 18S ribosomal RNA gene, partial sequence Length = 1681 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 cggtccgcctcacggcgagcac 78 |||||||||||||||||||||| Sbjct: 582 cggtccgcctcacggcgagcac 603
>ref|XM_321040.2| Anopheles gambiae str. PEST ENSANGP00000022463 (ENSANGG00000021069), partial mRNA Length = 13977 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 235 ccggctggacgaggaggtggag 256 |||||||||||||||||||||| Sbjct: 2694 ccggctggacgaggaggtggag 2715
>gb|U42827.1|GHU42827 Gossypium hirsutum 18S ribosomal RNA gene, partial sequence Length = 1733 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccg 80 ||||||||||||||||| |||||||| Sbjct: 626 gccggtccgcctcacggtgagcaccg 651
>gb|U42507.1|BCU42507 Bombax ceiba 18S ribosomal RNA gene, partial sequence Length = 1743 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccg 80 ||||||||||||||||| |||||||| Sbjct: 636 gccggtccgcctcacggtgagcaccg 661
>emb|CT834135.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120B05, full insert sequence Length = 1525 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 144 ccgaccacggcggcatcggcagcggcagc 172 ||||| ||||||||| ||||||||||||| Sbjct: 279 ccgacgacggcggcagcggcagcggcagc 251
>ref|XM_001219308.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_00088) mRNA, complete cds Length = 3447 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 accccccaatccccacccacc 48 ||||||||||||||||||||| Sbjct: 1742 accccccaatccccacccacc 1722
>ref|NM_001054876.1| Oryza sativa (japonica cultivar-group) Os02g0787300 (Os02g0787300) mRNA, partial cds Length = 1879 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 144 ccgaccacggcggcatcggcagcggcagc 172 ||||| ||||||||| ||||||||||||| Sbjct: 279 ccgacgacggcggcagcggcagcggcagc 251
>ref|XM_001138944.1| PREDICTED: Pan troglodytes splicing factor, arginine/serine-rich 14, transcript variant 6 (SFRS14), mRNA Length = 6663 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3064 ctgcagaagatgggctggaag 3084
>ref|XM_001138678.1| PREDICTED: Pan troglodytes splicing factor, arginine/serine-rich 14, transcript variant 4 (SFRS14), mRNA Length = 6826 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3227 ctgcagaagatgggctggaag 3247
>ref|XM_001138513.1| PREDICTED: Pan troglodytes splicing factor, arginine/serine-rich 14, transcript variant 2 (SFRS14), mRNA Length = 6923 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3324 ctgcagaagatgggctggaag 3344
>ref|XM_001138422.1| PREDICTED: Pan troglodytes splicing factor, arginine/serine-rich 14, transcript variant 1 (SFRS14), mRNA Length = 6504 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 2905 ctgcagaagatgggctggaag 2925
>ref|XM_001138864.1| PREDICTED: Pan troglodytes splicing factor, arginine/serine-rich 14, transcript variant 5 (SFRS14), mRNA Length = 6587 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 2988 ctgcagaagatgggctggaag 3008
>ref|XM_001138591.1| PREDICTED: Pan troglodytes splicing factor, arginine/serine-rich 14, transcript variant 3 (SFRS14), mRNA Length = 6325 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3383 ctgcagaagatgggctggaag 3403
>ref|XM_524161.2| PREDICTED: Pan troglodytes splicing factor, arginine/serine-rich 14, transcript variant 7 (SFRS14), mRNA Length = 6085 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3143 ctgcagaagatgggctggaag 3163
>gb|CP000394.1| Granulibacter bethesdensis CGDNIH1, complete genome Length = 2708355 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 accacggcggcatcggcagcg 167 ||||||||||||||||||||| Sbjct: 1891787 accacggcggcatcggcagcg 1891767
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 673 atttgagagtcatctaagctc 693 ||||||||||||||||||||| Sbjct: 9929129 atttgagagtcatctaagctc 9929109
>dbj|AK229675.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-91-N10 Length = 1228 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 937 aacattgaagtttggcttctc 957 ||||||||||||||||||||| Sbjct: 986 aacattgaagtttggcttctc 1006
>gb|BT026069.1| Arabidopsis thaliana At5g26610 mRNA, complete cds Length = 906 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 937 aacattgaagtttggcttctc 957 ||||||||||||||||||||| Sbjct: 783 aacattgaagtttggcttctc 803
>ref|XM_001071083.1| PREDICTED: Rattus norvegicus splicing factor, arginine/serine-rich 14 (predicted) (Sfrs14_predicted), mRNA Length = 4249 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3103 ctgcagaagatgggctggaag 3123
>ref|XM_341413.3| PREDICTED: Rattus norvegicus splicing factor, arginine/serine-rich 14 (predicted) (Sfrs14_predicted), mRNA Length = 4249 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3103 ctgcagaagatgggctggaag 3123
>ref|XM_001114911.1| PREDICTED: Macaca mulatta similar to splicing factor, arginine/serine-rich 14 (LOC719666), mRNA Length = 3661 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3113 ctgcagaagatgggctggaag 3133
>ref|NM_180554.1| Arabidopsis thaliana nucleic acid binding / zinc ion binding (AT5G26610) mRNA, complete cds Length = 1243 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 937 aacattgaagtttggcttctc 957 ||||||||||||||||||||| Sbjct: 986 aacattgaagtttggcttctc 1006
>ref|NM_180553.1| Arabidopsis thaliana nucleic acid binding / zinc ion binding (AT5G26610) mRNA, complete cds Length = 1103 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 937 aacattgaagtttggcttctc 957 ||||||||||||||||||||| Sbjct: 846 aacattgaagtttggcttctc 866
>ref|NM_124059.2| Arabidopsis thaliana HB-7; DNA binding / transcription factor (HB-7) mRNA, complete cds Length = 2463 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 511 acaaagaaagagattaaatgttgaacttg 539 ||||||||||||||||| || |||||||| Sbjct: 417 acaaagaaagagattaagtgctgaacttg 445
>gb|AC158553.13| Mus musculus chromosome 8, clone RP23-349E13, complete sequence Length = 213309 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 204899 ctgcagaagatgggctggaag 204879
>gb|AF084234.1| Diaphanoeca grandis 18S ribosomal RNA gene, partial sequence Length = 1794 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 647 ggtccgcctcacggcgagcac 667
>gb|AC110520.12| Mus musculus chromosome 7, clone RP23-24N16, complete sequence Length = 248540 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 850 gaaagagaagcaagaacaacc 870 ||||||||||||||||||||| Sbjct: 14737 gaaagagaagcaagaacaacc 14717
>gb|AC134409.12| Mus musculus chromosome 5, clone RP24-355F10, complete sequence Length = 141528 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 667 atatgaatttgagagtcatct 687 ||||||||||||||||||||| Sbjct: 1307 atatgaatttgagagtcatct 1287
>gb|AY674626.1| Petalostigma pubescens 18S ribosomal RNA gene, partial sequence Length = 1676 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccggtccgcctcacggcgagcaccg 80 |||||||||||||||| |||||||| Sbjct: 600 ccggtccgcctcacggtgagcaccg 624
>gb|AC124327.9| Mus musculus chromosome 8, clone RP24-490I13, complete sequence Length = 141781 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 119465 ctgcagaagatgggctggaag 119485
>gb|AC141426.3| Mus musculus BAC clone RP23-280I14 from chromosome 12, complete sequence Length = 227835 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 ctgggaaggaggctggggcgg 209 ||||||||||||||||||||| Sbjct: 185409 ctgggaaggaggctggggcgg 185429
>gb|BC023276.1| Mus musculus splicing factor, arginine/serine-rich 14, mRNA (cDNA clone IMAGE:3986304), partial cds Length = 1752 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 1219 ctgcagaagatgggctggaag 1239
>ref|XM_860090.1| PREDICTED: Canis familiaris similar to splicing factor, arginine/serine-rich 14, transcript variant 3 (LOC487882), mRNA Length = 3084 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 2890 ctgcagaagatgggctggaag 2910
>ref|XM_847076.1| PREDICTED: Canis familiaris similar to splicing factor, arginine/serine-rich 14, transcript variant 1 (LOC487882), mRNA Length = 3288 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3094 ctgcagaagatgggctggaag 3114
>ref|XM_860049.1| PREDICTED: Canis familiaris similar to splicing factor, arginine/serine-rich 14, transcript variant 2 (LOC487882), mRNA Length = 2908 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 2714 ctgcagaagatgggctggaag 2734
>gb|AC146279.2| Pan troglodytes BAC clone RP43-29J18 from 7, complete sequence Length = 188896 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1200 aacaaccccatcaacaagcag 1220 ||||||||||||||||||||| Sbjct: 71632 aacaaccccatcaacaagcag 71612
>gb|AC147408.1| Pan troglodytes BAC clone RP43-81O16 from 7, complete sequence Length = 151748 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1200 aacaaccccatcaacaagcag 1220 ||||||||||||||||||||| Sbjct: 132466 aacaaccccatcaacaagcag 132446
>gb|BC057305.1| Mus musculus splicing factor, arginine/serine-rich 14, mRNA (cDNA clone MGC:66544 IMAGE:6822887), complete cds Length = 4296 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3105 ctgcagaagatgggctggaag 3125
>gb|BC042763.1| Mus musculus splicing factor, arginine/serine-rich 14, mRNA (cDNA clone IMAGE:4461150), partial cds Length = 2893 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 1800 ctgcagaagatgggctggaag 1820
>gb|AC107312.9| Homo sapiens 3 BAC RP11-574E7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138925 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1125 tagattccagtgagaagatga 1145 ||||||||||||||||||||| Sbjct: 29505 tagattccagtgagaagatga 29485
>gb|BC020586.1| Homo sapiens splicing factor, arginine/serine-rich 14, mRNA (cDNA clone MGC:22011 IMAGE:4400185), complete cds Length = 4202 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 2965 ctgcagaagatgggctggaag 2985
>gb|AC004949.1| Homo sapiens PAC clone RP5-1008N9 from 7, complete sequence Length = 172366 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1200 aacaaccccatcaacaagcag 1220 ||||||||||||||||||||| Sbjct: 164857 aacaaccccatcaacaagcag 164837
>ref|NM_132370.1| Drosophila melanogaster CG2989-RA (CG2989), mRNA Length = 13497 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 673 atttgagagtcatctaagctc 693 ||||||||||||||||||||| Sbjct: 4379 atttgagagtcatctaagctc 4359
>dbj|AK074842.1| Homo sapiens cDNA FLJ90361 fis, clone NT2RP2003931 Length = 5564 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3340 ctgcagaagatgggctggaag 3360
>gb|AY788158.1| Tetracoccus dioicus 18S ribosomal RNA gene, partial sequence Length = 1712 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccggtccgcctcacggcgagcaccg 80 |||||||||||||||| |||||||| Sbjct: 618 ccggtccgcctcacggtgagcaccg 642
>dbj|AB168374.1| Macaca fascicularis testis cDNA clone: QtsA-11594, similar to human splicing factor, arginine/serine-rich 14 (SFRS14), mRNA, RefSeq: NM_014884.1 Length = 2682 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 2215 ctgcagaagatgggctggaag 2235
>gb|AC023705.4| Drosophila melanogaster X BAC RP98-7L6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184796 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 673 atttgagagtcatctaagctc 693 ||||||||||||||||||||| Sbjct: 135143 atttgagagtcatctaagctc 135163
>emb|AM071397.1| Malva sylvestris partial 18S rRNA gene Length = 1743 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccggtccgcctcacggcgagcaccg 80 |||||||||||||||| |||||||| Sbjct: 638 ccggtccgcctcacggtgagcaccg 662
>gb|AY012390.1| Hydriastele wendlandiana 18S small subunit ribosomal RNA gene, partial sequence Length = 1713 Score = 42.1 bits (21), Expect = 5.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 55 gccggtccgcctcacggcgagcaccgacctactcgacccttcggccggc 103 ||||||||||||||||| | |||||| ||| | || |||||| |||||| Sbjct: 631 gccggtccgcctcacggtgtgcaccggccttcccgtcccttctgccggc 679
>dbj|AK042293.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630079E18 product:hypothetical D111/G-patch domain/Aminoacyl-transfer RNA synthetases class-I/Glutamic acid-rich region/SWAP / SURP containing protein, full insert sequence Length = 3684 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3453 ctgcagaagatgggctggaag 3473
>ref|XM_813997.1| Trypanosoma cruzi strain CL Brener DNA-J protein (Tc00.1047053506941.270) partial mRNA Length = 936 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 784 gcaacagcgagaagagaagga 804 ||||||||||||||||||||| Sbjct: 288 gcaacagcgagaagagaagga 308
>gb|AC090376.6| Homo sapiens chromosome 18, clone RP11-846C15, complete sequence Length = 206399 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 854 gagaagcaagaacaaccagag 874 ||||||||||||||||||||| Sbjct: 76307 gagaagcaagaacaaccagag 76327
>gb|AC010232.10| Homo sapiens chromosome 5 clone CTC-316C21, complete sequence Length = 165920 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 ccccccaatccccacccaccc 49 ||||||||||||||||||||| Sbjct: 150235 ccccccaatccccacccaccc 150215
>dbj|AB002363.2| Homo sapiens mRNA for KIAA0365 protein, partial cds Length = 5545 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3353 ctgcagaagatgggctggaag 3373
>gb|AC018626.8| Homo sapiens chromosome 18, clone RP11-678P20, complete sequence Length = 200204 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 854 gagaagcaagaacaaccagag 874 ||||||||||||||||||||| Sbjct: 83170 gagaagcaagaacaaccagag 83190
>emb|AL353150.25| Human DNA sequence from clone RP11-82L18 on chromosome 9 Contains the 3' end of a novel gene (SHC3) and a novel gene, complete sequence Length = 113051 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 719 ttcaaggaaatgaaagagatg 739 ||||||||||||||||||||| Sbjct: 91299 ttcaaggaaatgaaagagatg 91319
>emb|AL109953.24|HSDJ746H2 Human DNA sequence from clone RP4-746H2 on chromosome 20 Contains the MRPS11P1 gene for mitochondrial ribosmal protein S11 pseudogene 1, complete sequence Length = 148859 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 794 gaagagaaggagctggcaaaatttg 818 ||||||| ||||||||||||||||| Sbjct: 72341 gaagagatggagctggcaaaatttg 72365
>gb|AF206957.1| Malesherbia linearifolia 18S ribosomal RNA gene, complete sequence Length = 1739 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccggtccgcctcacggcgagcaccg 80 |||||||||||||||| |||||||| Sbjct: 632 ccggtccgcctcacggtgagcaccg 656
>gb|AF206905.1| Durio zibethinus 18S ribosomal RNA gene, complete sequence Length = 1745 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccggtccgcctcacggcgagcaccg 80 |||||||||||||||| |||||||| Sbjct: 633 ccggtccgcctcacggtgagcaccg 657
>gb|AF206848.1| Androstachys johnsonii 18S ribosomal RNA gene, complete sequence Length = 1456 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 ccggtccgcctcacggcgagcaccg 80 |||||||||||||||| |||||||| Sbjct: 349 ccggtccgcctcacggtgagcaccg 373
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 150 acggcggcatcggcagcggcagcaa 174 ||||||||| ||||||||||||||| Sbjct: 6867431 acggcggcagcggcagcggcagcaa 6867407
>gb|AC008642.5| Homo sapiens chromosome 5 clone CTB-180C19, complete sequence Length = 97687 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 714 agaggttcaaggaaatgaaag 734 ||||||||||||||||||||| Sbjct: 20376 agaggttcaaggaaatgaaag 20396
>gb|AY084447.1| Arabidopsis thaliana clone 108509 mRNA, complete sequence Length = 1104 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 937 aacattgaagtttggcttctc 957 ||||||||||||||||||||| Sbjct: 846 aacattgaagtttggcttctc 866
>ref|NM_001017392.1| Homo sapiens splicing factor, arginine/serine-rich 14 (SFRS14), transcript variant 1, mRNA emb|BX647813.1|HSM807959 Homo sapiens mRNA; cDNA DKFZp686E0151 (from clone DKFZp686E0151) Length = 4717 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3130 ctgcagaagatgggctggaag 3150
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 144 ccgaccacggcggcatcggcagcggcagc 172 ||||| ||||||||| ||||||||||||| Sbjct: 130122 ccgacgacggcggcagcggcagcggcagc 130094
>emb|AL832488.1|HSM803796 Homo sapiens mRNA; cDNA DKFZp686C1922 (from clone DKFZp686C1922) Length = 3669 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 2965 ctgcagaagatgggctggaag 2985
>gb|BC047383.1| Mus musculus cDNA clone IMAGE:5356975, containing frame-shift errors Length = 4497 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 539 ctgcagaagatgggctggaag 559
>gb|AF058914.1|F21E10 Arabidopsis thaliana BAC F21E10, complete sequence Length = 111767 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 937 aacattgaagtttggcttctc 957 ||||||||||||||||||||| Sbjct: 21834 aacattgaagtttggcttctc 21814
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 501 aggacaatgtacaaagaaagagatt 525 ||||||||||||||||||| ||||| Sbjct: 1043798 aggacaatgtacaaagaaatagatt 1043774
>emb|CR607078.1| full-length cDNA clone CS0DF031YF14 of Fetal brain of Homo sapiens (human) Length = 1566 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 1152 ctgcagaagatgggctggaag 1172
>emb|CR594892.1| full-length cDNA clone CS0DC024YC22 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1324 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 903 ctgcagaagatgggctggaag 923
>ref|NM_172755.2| Mus musculus splicing factor, arginine/serine-rich 14 (Sfrs14), mRNA gb|AF518875.1| Mus musculus arginine/serine-rich 14 splicing factor (Sfrs14) mRNA, complete cds Length = 3891 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3445 ctgcagaagatgggctggaag 3465
>ref|NM_014884.1| Homo sapiens splicing factor, arginine/serine-rich 14 (SFRS14), transcript variant 2, mRNA gb|AF518874.1| Homo sapiens arginine/serine-rich 14 splicing factor (SFRS14) mRNA, complete cds Length = 3663 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3190 ctgcagaagatgggctggaag 3210
>gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, complete sequence Length = 138141 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1200 aacaaccccatcaacaagcag 1220 ||||||||||||||||||||| Sbjct: 96601 aacaaccccatcaacaagcag 96621
>gb|AC007376.9|AC007376 Homo sapiens chromosome 14 clone 99E15 containing gene for KIAA 1036, complete CDS, complete sequence Length = 186330 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1200 aacaaccccatcaacaagcag 1220 ||||||||||||||||||||| Sbjct: 151812 aacaaccccatcaacaagcag 151832
>gb|AC023732.5| Drosophila melanogaster X BAC RP98-42M11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177820 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 673 atttgagagtcatctaagctc 693 ||||||||||||||||||||| Sbjct: 169616 atttgagagtcatctaagctc 169596
>dbj|AB072278.1| Ipomoea nil transposon Tpn108 DNA, complete sequence Length = 7470 Score = 42.1 bits (21), Expect = 5.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 344 tccaacgtcggcttcaggcttctgcagaagatgggctggaa 384 ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct: 4805 tccaatgtcggattcaggcttcttcagaaaatggggtggaa 4845
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 cgcagctcgcctcctccaacgtcgg 354 |||||||||||||||||||| |||| Sbjct: 161921 cgcagctcgcctcctccaacctcgg 161897
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 144 ccgaccacggcggcatcggcagcggcagc 172 ||||| ||||||||| ||||||||||||| Sbjct: 37038 ccgacgacggcggcagcggcagcggcagc 37066
>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1316_E06 Length = 110197 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 144 ccgaccacggcggcatcggcagcggcagc 172 ||||| ||||||||| ||||||||||||| Sbjct: 92782 ccgacgacggcggcagcggcagcggcagc 92810
>dbj|AB013394.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22 Length = 85661 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 511 acaaagaaagagattaaatgttgaacttg 539 ||||||||||||||||| || |||||||| Sbjct: 1011 acaaagaaagagattaagtgctgaacttg 1039
>dbj|AK120525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126P12, full insert sequence Length = 1880 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 144 ccgaccacggcggcatcggcagcggcagc 172 ||||| ||||||||| ||||||||||||| Sbjct: 280 ccgacgacggcggcagcggcagcggcagc 252
>gb|AC091962.2| Homo sapiens chromosome 5 clone RP11-461L18, complete sequence Length = 152403 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 ccccccaatccccacccaccc 49 ||||||||||||||||||||| Sbjct: 11938 ccccccaatccccacccaccc 11918
>emb|BX841652.1|CNS09YJ8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS38ZG02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1115 Score = 42.1 bits (21), Expect = 5.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 511 acaaagaaagagattaaatgttgaacttg 539 ||||||||||||||||| || |||||||| Sbjct: 606 acaaagaaagagattaagtgctgaacttg 634
>gb|DQ310339.1| Uncultured marine eukaryote clone FV36_CilD8D9D12 small subunit ribosomal RNA gene, partial sequence Length = 1416 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 730 ggtccgcctcacggcgagcac 750
>gb|DQ310315.1| Uncultured marine eukaryote clone FV36_CilH12 small subunit ribosomal RNA gene, partial sequence Length = 1333 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 648 ggtccgcctcacggcgagcac 668
>gb|DQ310313.1| Uncultured marine eukaryote clone FV36_CilE11 small subunit ribosomal RNA gene, partial sequence Length = 1334 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 647 ggtccgcctcacggcgagcac 667
>gb|DQ310312.1| Uncultured marine eukaryote clone FV36_CilG10 small subunit ribosomal RNA gene, partial sequence Length = 1333 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 648 ggtccgcctcacggcgagcac 668
>gb|DQ310306.1| Uncultured marine eukaryote clone FV36_CilF10 small subunit ribosomal RNA gene, partial sequence Length = 1334 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 649 ggtccgcctcacggcgagcac 669
>gb|DQ310302.1| Uncultured marine eukaryote clone FV36_CilA12 small subunit ribosomal RNA gene, partial sequence Length = 1332 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 647 ggtccgcctcacggcgagcac 667
>gb|DQ310290.1| Uncultured marine eukaryote clone FV36_CilA8 small subunit ribosomal RNA gene, partial sequence Length = 1333 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 647 ggtccgcctcacggcgagcac 667
>gb|DQ310289.1| Uncultured marine eukaryote clone FV36_CilD7 small subunit ribosomal RNA gene, partial sequence Length = 1333 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 647 ggtccgcctcacggcgagcac 667
>gb|DQ310287.1| Uncultured marine eukaryote clone FV36_CilC11 small subunit ribosomal RNA gene, partial sequence Length = 1333 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 648 ggtccgcctcacggcgagcac 668
>gb|DQ310286.1| Uncultured marine eukaryote clone FV36_CilC10 small subunit ribosomal RNA gene, partial sequence Length = 1333 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 648 ggtccgcctcacggcgagcac 668
>gb|DQ310285.1| Uncultured marine eukaryote clone FV36_CilB9 small subunit ribosomal RNA gene, partial sequence Length = 1331 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 645 ggtccgcctcacggcgagcac 665
>gb|DQ310249.1| Uncultured marine eukaryote clone FV36_2D08 small subunit ribosomal RNA gene, partial sequence Length = 1398 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 274 ggtccgcctcacggcgagcac 294
>gb|DQ310248.1| Uncultured marine eukaryote clone FV36_2A12 small subunit ribosomal RNA gene, partial sequence Length = 1398 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 274 ggtccgcctcacggcgagcac 294
>gb|DQ310239.1| Uncultured marine eukaryote clone FV36_2B09 small subunit ribosomal RNA gene, partial sequence Length = 1399 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 274 ggtccgcctcacggcgagcac 294
>gb|AC137947.12| Mus musculus chromosome 5, clone RP23-362I3, complete sequence Length = 214295 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 667 atatgaatttgagagtcatct 687 ||||||||||||||||||||| Sbjct: 138048 atatgaatttgagagtcatct 138028
>gb|DQ059033.1| Diaphanoeca grandis 18S small subunit ribosomal RNA gene, partial sequence Length = 1794 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 647 ggtccgcctcacggcgagcac 667
>emb|AJ748832.1| Streptomyces lividus lividomycin biosynthesis gene cluster Length = 40579 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 cgaccggctggacgaggaggt 252 ||||||||||||||||||||| Sbjct: 37401 cgaccggctggacgaggaggt 37421
>gb|AC004447.1|AC004447 Homo sapiens chromosome 19, overlapping cosmids R27918 and R33775, complete sequence Length = 73007 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 19311 ctgcagaagatgggctggaag 19291
>emb|AL832587.1|HSM803896 Homo sapiens mRNA; cDNA DKFZp451K1016 (from clone DKFZp451K1016) Length = 5304 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ctgcagaagatgggctggaag 385 ||||||||||||||||||||| Sbjct: 3113 ctgcagaagatgggctggaag 3133
>gb|L10824.1|DPHSSRRNA Diaphanoeca grandis 16S-like small subunit ribosomal RNA Length = 1794 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 ggtccgcctcacggcgagcac 78 ||||||||||||||||||||| Sbjct: 647 ggtccgcctcacggcgagcac 667
>emb|X89220.1|SC18SRRN1 S.crocea 18S ribosomal RNA gene Length = 1567 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 cgccggtccgcctcacggcgagcac 78 |||||||||||||||| |||||||| Sbjct: 603 cgccggtccgcctcacagcgagcac 627 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 244,170,874 Number of extensions: 13533514 Number of successful extensions: 323405 Number of sequences better than 10.0: 211 Number of HSP's gapped: 323392 Number of HSP's successfully gapped: 243 Length of query: 1449 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1426 Effective length of database: 18,503,978,556 Effective search space: 26386673420856 Effective search space used: 26386673420856 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
