ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf8m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q7XBQ9:RGA2_SOLBU Disease resistance protein RGA2 - Solanum bulb... 47 4e-04
2Q7XA40:RGA3_SOLBU Putative disease resistance protein RGA3 - Sol... 45 0.002
3Q7XA39:RGA4_SOLBU Putative disease resistance protein RGA4 - Sol... 43 0.006
4Q7XA42:RGA1_SOLBU Putative disease resistance protein RGA1 - Sol... 41 0.022
5Q9LRR5:DRL21_ARATH Putative disease resistance protein At3g14460... 39 0.082
6Q9LRR4:R13L1_ARATH Putative disease resistance RPP13-like protei... 37 0.41
7Q39214:RPM1_ARATH Disease resistance protein RPM1 - Arabidopsis ... 35 2.0
8P01267:THYG_BOVIN Thyroglobulin precursor - Bos taurus (Bovine) 35 2.0
9P11268:ENV_MLVRD Envelope glycoprotein precursor - Radiation mur... 33 5.9
10O93375:COE2_DANRE Transcription factor COE2 - Danio rerio (Zebra... 33 7.7

>Q7XBQ9:RGA2_SOLBU Disease resistance protein RGA2 - Solanum bulbocastanum (Wild potato)|
          Length = 970
 Score = 47.0 bits (110), Expect = 4e-04
 Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 32/202 (15%)
 Frame = +2

Query: 1271 MFGRHTEKQKLLNFVLQHSPPGCTPAVLPVIGAPAVGKRTLVAHICKDERVRSHFTSILH 1450
            ++GR  EK +++  ++ +       +VLP++G   +GK TL   +  D+RV  HF S + 
Sbjct: 151  VYGRDKEKDEIVKILINNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTEHFHSKIW 210

Query: 1451 LNGDSICRLADHD------------------------------RSLLSGNT-LXXXXXXX 1537
                 IC   D D                              + LL+G   L       
Sbjct: 211  -----ICVSEDFDEKRLIKAIVESIEGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVW 265

Query: 1538 XXXXXXWAKFHSTLASMDSGSKVIIISRL-RSSERLGTVKPIFLNTPSYEEFSYLFKTLT 1714
                  WA   + L    SG+ V+  +RL +    +GT++P  L+  S E+   LF    
Sbjct: 266  NEDQQKWANLRAVLKVGASGASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQRA 325

Query: 1715 FRGANPVQHPRLAQIADQLARE 1780
            F G     +P L  I  ++ ++
Sbjct: 326  F-GHQEEINPNLVAIGKEIVKK 346



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>Q7XA40:RGA3_SOLBU Putative disease resistance protein RGA3 - Solanum bulbocastanum|
            (Wild potato)
          Length = 992

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 26/238 (10%)
 Frame = +2

Query: 1145 LQGMLESLEDVVASMTEFVVLLGGCDRMLPRPYDAYLYTGNIMFGRHTEKQKLLNFVLQH 1324
            ++ M+E L+ +      F +     +R   R    ++ T   ++GR  E+ +++  ++ +
Sbjct: 109  MKEMMEKLDAIAEERRNFHLDERIIERQAARRQTGFVLTEPKVYGREKEEDEIVKILINN 168

Query: 1325 SPPGCTPAVLPVIGAPAVGKRTLVAHICKDERVRSHF-------------------TSIL 1447
                    VLP++G   +GK TL   +  D+R+  HF                     + 
Sbjct: 169  VSYSEEVPVLPILGMGGLGKTTLAQMVFNDQRITEHFNLKIWVCVSDDFDEKRLIKAIVE 228

Query: 1448 HLNGDS-----ICRLADHDRSLLSGNT-LXXXXXXXXXXXXXWAKFHSTLASMDSGSKVI 1609
             + G S     +  L    + LL+G                 W    + L    SG+ ++
Sbjct: 229  SIEGKSLGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASIL 288

Query: 1610 IISRL-RSSERLGTVKPIFLNTPSYEEFSYLFKTLTFRGANPVQHPRLAQIADQLARE 1780
            I +RL +    +GT++   L+  S E+   LFK   F        P+L +I  ++ ++
Sbjct: 289  ITTRLEKIGSIMGTLQLYQLSNLSQEDCWLLFKQRAFCHQTETS-PKLMEIGKEIVKK 345



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>Q7XA39:RGA4_SOLBU Putative disease resistance protein RGA4 - Solanum bulbocastanum|
            (Wild potato)
          Length = 988

 Score = 43.1 bits (100), Expect = 0.006
 Identities = 42/203 (20%), Positives = 78/203 (38%), Gaps = 26/203 (12%)
 Frame = +2

Query: 1250 YLYTGNIMFGRHTEKQKLLNFVLQHSPPGCTPAVLPVIGAPAVGKRTLVAHICKDERVRS 1429
            ++ T   ++GR  E+ +++  ++ +        V P+IG   +GK TL   I  DERV  
Sbjct: 146  FVLTEPKVYGRDKEEDEIVKILINNVNVAEELPVFPIIGMGGLGKTTLAQMIFNDERVTK 205

Query: 1430 HFTSILHL------------------------NGDSICRLADHDRSLLSGNT-LXXXXXX 1534
            HF   + +                        + + +       + LL+G   L      
Sbjct: 206  HFNPKIWVCVSDDFDEKRLIKTIIGNIERSSPHVEDLASFQKKLQELLNGKRYLLVLDDV 265

Query: 1535 XXXXXXXWAKFHSTLASMDSGSKVIIISRL-RSSERLGTVKPIFLNTPSYEEFSYLFKTL 1711
                   WAK  + L     G+ ++  +RL +    +GT++P  L+  S  +   LF   
Sbjct: 266  WNDDLEKWAKLRAVLTVGARGASILATTRLEKVGSIMGTLQPYHLSNLSPHDSLLLFMQR 325

Query: 1712 TFRGANPVQHPRLAQIADQLARE 1780
             F G     +P L  I  ++ ++
Sbjct: 326  AF-GQQKEANPNLVAIGKEIVKK 347



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>Q7XA42:RGA1_SOLBU Putative disease resistance protein RGA1 - Solanum bulbocastanum|
            (Wild potato)
          Length = 979

 Score = 41.2 bits (95), Expect = 0.022
 Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 29/199 (14%)
 Frame = +2

Query: 1271 MFGRHTEKQKLLNFVLQHSPPGCTPAVLPVIGAPAVGKRTLVAHICKDERVRSHF----- 1435
            ++GR  EK +++  ++  +      +VLP++G   +GK TL   +  D+RV   F     
Sbjct: 151  VYGRDKEKDEIVKILINTASDAQKLSVLPILGMGGLGKTTLSQMVFNDQRVTERFYPKIW 210

Query: 1436 --------------TSILHLNGDSICRLADHD--------RSLLSGNT-LXXXXXXXXXX 1546
                            +  + G S   L+D D        + LL+G              
Sbjct: 211  ICISDDFNEKRLIKAIVESIEGKS---LSDMDLAPLQKKLQELLNGKRYFLVLDDVWNED 267

Query: 1547 XXXWAKFHSTLASMDSGSKVIIISRL-RSSERLGTVKPIFLNTPSYEEFSYLFKTLTFRG 1723
               WA   + L    SG+ V+  +RL +    +GT++P  L+  S E+  +LF    F G
Sbjct: 268  QHKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQPYELSNLSPEDCWFLFMQRAF-G 326

Query: 1724 ANPVQHPRLAQIADQLARE 1780
                 +P L  I  ++ ++
Sbjct: 327  HQEEINPNLMAIGKEIVKK 345



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>Q9LRR5:DRL21_ARATH Putative disease resistance protein At3g14460 - Arabidopsis thaliana|
            (Mouse-ear cress)
          Length = 1424

 Score = 39.3 bits (90), Expect = 0.082
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 1271 MFGRHTEKQKLLNFVLQHSPPGC-TPAVLPVIGAPAVGKRTLVAHICKDERVRSHF 1435
            + GR  +K  L+N +L         PAV+ V+G P VGK TL   +  D RV  HF
Sbjct: 168  LVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHF 223



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>Q9LRR4:R13L1_ARATH Putative disease resistance RPP13-like protein 1 - Arabidopsis|
            thaliana (Mouse-ear cress)
          Length = 1054

 Score = 37.0 bits (84), Expect = 0.41
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +2

Query: 1271 MFGRHTEKQKLLNFVLQHSPPGCTPAVLPVIGAPAVGKRTLVAHICKDERVRSHF 1435
            +FGR  +K +++ F++  +       V+ ++G   VGK TL   +  D+ VRS+F
Sbjct: 172  VFGRDDDKDEIMRFLIPENGKDNGITVVAIVGIGGVGKTTLSQLLYNDQHVRSYF 226



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>Q39214:RPM1_ARATH Disease resistance protein RPM1 - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 926

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = +2

Query: 1256 YTGNIMFGRHTEKQKLLNFVLQHSPPGCTPAVLPVIGAPAVGKRTLVAHICKDERVRSHF 1435
            ++ N + G    K KL+  +L   P      V+ V+G    GK TL A+I K + VR HF
Sbjct: 167  FSENSLVGIDAPKGKLIGRLLSPEPQRI---VVAVVGMGGSGKTTLSANIFKSQSVRRHF 223

Query: 1436 TS 1441
             S
Sbjct: 224  ES 225



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>P01267:THYG_BOVIN Thyroglobulin precursor - Bos taurus (Bovine)|
          Length = 2769

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = -1

Query: 1866 MPRQKWTSRFLPNKSANMFMATSDHSVRNSLASWSAICANRGCCTGFAPLNVSVLK 1699
            +P QK T   + NK     +  SD S+ +       +C    CCTGF  LNVS LK
Sbjct: 1969 LPFQKLTGISIRNK-----VPMSDKSISSGFFECERLCDMDPCCTGFGFLNVSQLK 2019



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>P11268:ENV_MLVRD Envelope glycoprotein precursor - Radiation murine leukemia virus|
          Length = 665

 Score = 33.1 bits (74), Expect = 5.9
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
 Frame = -2

Query: 1172 PPSSPACLAGRQGTRPCCSWHCHEP-------CEDVW 1083
            PP  P C +G  G+ P CS  C EP       C   W
Sbjct: 97   PPPGPPCCSGSSGSTPGCSRDCEEPLTSYTPRCNTAW 133



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>O93375:COE2_DANRE Transcription factor COE2 - Danio rerio (Zebrafish) (Brachydanio|
            rerio)
          Length = 579

 Score = 32.7 bits (73), Expect = 7.7
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 1979 PNASPLCIMPSCTSGSSRTEVTTERASLPRVRLGDLMMDPGVRPQG 2116
            PN+SP  IMPS   GSS +      +S P          P +RPQG
Sbjct: 508  PNSSPYAIMPSSPPGSSSSSSLLPFSSFPSSTKQKSAFAPVLRPQG 553


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 469,521,821
Number of extensions: 11020819
Number of successful extensions: 33387
Number of sequences better than 10.0: 10
Number of HSP's gapped: 33365
Number of HSP's successfully gapped: 10
Length of query: 857
Length of database: 100,686,439
Length adjustment: 122
Effective length of query: 735
Effective length of database: 67,222,449
Effective search space: 49408500015
Effective search space used: 49408500015
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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