ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf8m01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001070648.1| Oryza sativa (japonica cultivar-group) Os10g0134500 (Os10g0134500) mRNA, complete cds Length = 1353 Score = 60.0 bits (30), Expect = 4e-05 Identities = 66/78 (84%) Strand = Plus / Plus Query: 872 ctgcagcagctgctcctgagagctcgcacagtcgttgaggaggcggatgggaggtacatc 931 ||||||||||||||||| ||| ||| ||||| ||||||||||||||| | |||||| Sbjct: 112 ctgcagcagctgctcctacgagtatccacggtcgtcgaggaggcggatgggcgatacatc 171 Query: 932 actaactctgggatgctg 949 || ||||| ||||||||| Sbjct: 172 accaactccgggatgctg 189
>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0013J21, complete sequence Length = 155290 Score = 60.0 bits (30), Expect = 4e-05 Identities = 66/78 (84%) Strand = Plus / Plus Query: 872 ctgcagcagctgctcctgagagctcgcacagtcgttgaggaggcggatgggaggtacatc 931 ||||||||||||||||| ||| ||| ||||| ||||||||||||||| | |||||| Sbjct: 104237 ctgcagcagctgctcctacgagtatccacggtcgtcgaggaggcggatgggcgatacatc 104296 Query: 932 actaactctgggatgctg 949 || ||||| ||||||||| Sbjct: 104297 accaactccgggatgctg 104314 Score = 56.0 bits (28), Expect = 7e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 902 gtcgttgaggaggcggatgggaggtacatcactaactctgggatgctg 949 ||||| ||||||||||| ||| | |||||||| ||||||||||||||| Sbjct: 108555 gtcgtcgaggaggcggacgggcgatacatcaccaactctgggatgctg 108602 Score = 42.1 bits (21), Expect = 9.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1678 gtatgaggagttcagctacctcttcaagacact 1710 ||||||||||| ||| ||||| ||||||||||| Sbjct: 86897 gtatgaggagtacagatacctattcaagacact 86929
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 60.0 bits (30), Expect = 4e-05 Identities = 66/78 (84%) Strand = Plus / Plus Query: 872 ctgcagcagctgctcctgagagctcgcacagtcgttgaggaggcggatgggaggtacatc 931 ||||||||||||||||| ||| ||| ||||| ||||||||||||||| | |||||| Sbjct: 2126097 ctgcagcagctgctcctacgagtatccacggtcgtcgaggaggcggatgggcgatacatc 2126156 Query: 932 actaactctgggatgctg 949 || ||||| ||||||||| Sbjct: 2126157 accaactccgggatgctg 2126174 Score = 56.0 bits (28), Expect = 7e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 902 gtcgttgaggaggcggatgggaggtacatcactaactctgggatgctg 949 ||||| ||||||||||| ||| | |||||||| ||||||||||||||| Sbjct: 2130415 gtcgtcgaggaggcggacgggcgatacatcaccaactctgggatgctg 2130462 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1196 tttgttgttcttttgggtgggtgcga 1221 |||||||||||||||||||| ||||| Sbjct: 2220725 tttgttgttcttttgggtggatgcga 2220700 Score = 42.1 bits (21), Expect = 9.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1678 gtatgaggagttcagctacctcttcaagacact 1710 ||||||||||| ||| ||||| ||||||||||| Sbjct: 2108757 gtatgaggagtacagatacctattcaagacact 2108789
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 60.0 bits (30), Expect = 4e-05 Identities = 66/78 (84%) Strand = Plus / Plus Query: 872 ctgcagcagctgctcctgagagctcgcacagtcgttgaggaggcggatgggaggtacatc 931 ||||||||||||||||| ||| ||| ||||| ||||||||||||||| | |||||| Sbjct: 2126097 ctgcagcagctgctcctacgagtatccacggtcgtcgaggaggcggatgggcgatacatc 2126156 Query: 932 actaactctgggatgctg 949 || ||||| ||||||||| Sbjct: 2126157 accaactccgggatgctg 2126174 Score = 56.0 bits (28), Expect = 7e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 902 gtcgttgaggaggcggatgggaggtacatcactaactctgggatgctg 949 ||||| ||||||||||| ||| | |||||||| ||||||||||||||| Sbjct: 2130415 gtcgtcgaggaggcggacgggcgatacatcaccaactctgggatgctg 2130462 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1196 tttgttgttcttttgggtgggtgcga 1221 |||||||||||||||||||| ||||| Sbjct: 2220725 tttgttgttcttttgggtggatgcga 2220700 Score = 42.1 bits (21), Expect = 9.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1678 gtatgaggagttcagctacctcttcaagacact 1710 ||||||||||| ||| ||||| ||||||||||| Sbjct: 2108757 gtatgaggagtacagatacctattcaagacact 2108789
>ref|NM_001070649.1| Oryza sativa (japonica cultivar-group) Os10g0134700 (Os10g0134700) mRNA, complete cds Length = 1452 Score = 56.0 bits (28), Expect = 7e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 902 gtcgttgaggaggcggatgggaggtacatcactaactctgggatgctg 949 ||||| ||||||||||| ||| | |||||||| ||||||||||||||| Sbjct: 142 gtcgtcgaggaggcggacgggcgatacatcaccaactctgggatgctg 189
>tpd|BR000043.1| TPA_exp: Homo sapiens S100 calcium binding protein A7-like gene duplications, clone RP1-128L15, chromosome 1q21.1-21.3 Length = 164144 Score = 46.1 bits (23), Expect = 0.63 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1197 ttgttgttcttttgggtgggtgc 1219 ||||||||||||||||||||||| Sbjct: 87251 ttgttgttcttttgggtgggtgc 87273
>emb|CR407547.14| Zebrafish DNA sequence from clone DKEY-62A12 in linkage group 9, complete sequence Length = 204067 Score = 46.1 bits (23), Expect = 0.63 Identities = 23/23 (100%) Strand = Plus / Minus Query: 2416 caaaattaatttttgtagtcaaa 2438 ||||||||||||||||||||||| Sbjct: 7099 caaaattaatttttgtagtcaaa 7077
>emb|AL591704.7| Human DNA sequence from clone RP1-128L15 on chromosome 1q21.1-21.3 Contains the 5' end of the gene for peptidoglycan recognition protein-I-alpha (PGLYRPIalpha), the PGLYRP4 gene for peptidoglycan recognition protein 4, the S100A9 gene for S100 calcium binding protein A9 (calgranulin B), the S100A12 gene for S100 calcium binding protein A12 (calgranulin C), a LAPTM4B (lysosomal associated protein transmembrane 4 beta) pseudogene, the S100A8 gene for S100 calcium binding protein A8 (calgranulin A), a S100 calcium-binding protein pseudogene, the S100A15 gene for S100 calcium binding protein A15, a S100 calcium-binding protein pseudogene, the gene for a novel S100 calcium-binding protein and the S100A7 gene for S100 calcium binding protein A7 (psoriasin 1), complete sequence Length = 164144 Score = 46.1 bits (23), Expect = 0.63 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1197 ttgttgttcttttgggtgggtgc 1219 ||||||||||||||||||||||| Sbjct: 87251 ttgttgttcttttgggtgggtgc 87273
>gb|M21005.1|HUMMRP8A Human migration inhibitory factor-related protein 8 (MRP8) gene, complete cds Length = 4195 Score = 46.1 bits (23), Expect = 0.63 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1197 ttgttgttcttttgggtgggtgc 1219 ||||||||||||||||||||||| Sbjct: 965 ttgttgttcttttgggtgggtgc 943
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 2395 ttttatattatgaaaaaagggcaaaattaa 2424 ||||| ||||||| |||||||||||||||| Sbjct: 14957052 ttttacattatgataaaagggcaaaattaa 14957081
>gb|AC165246.2| Mus musculus BAC clone RP24-220A15 from chromosome 9, complete sequence Length = 161208 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1144 cctgcaaggcatgctggagagcttgg 1169 |||||| ||||||||||||||||||| Sbjct: 86197 cctgcagggcatgctggagagcttgg 86222
>gb|BC041741.1| Xenopus laevis similar to CDC42 binding protein kinase beta (DMPK-like), mRNA (cDNA clone IMAGE:4884516), partial cds Length = 2426 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 864 tgaagaggctgcagcagctgctcctg 889 ||||||||||| |||||||||||||| Sbjct: 295 tgaagaggctggagcagctgctcctg 320
>gb|BC094047.1| Mus musculus ubiquitin-like 7 (bone marrow stromal cell-derived), mRNA (cDNA clone MGC:103069 IMAGE:5253101), complete cds Length = 1322 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1144 cctgcaaggcatgctggagagcttgg 1169 |||||| ||||||||||||||||||| Sbjct: 1022 cctgcagggcatgctggagagcttgg 997
>dbj|AK154496.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630040G07 product:Ubiquitin-like protein SB132 homolog [Homo sapiens], full insert sequence Length = 1320 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1144 cctgcaaggcatgctggagagcttgg 1169 |||||| ||||||||||||||||||| Sbjct: 1043 cctgcagggcatgctggagagcttgg 1018
>gb|AC093497.2| Drosophila melanogaster 3L BAC RP98-1H12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170071 Score = 44.1 bits (22), Expect = 2.5 Identities = 28/30 (93%) Strand = Plus / Plus Query: 2395 ttttatattatgaaaaaagggcaaaattaa 2424 ||||| ||||||| |||||||||||||||| Sbjct: 69266 ttttacattatgataaaagggcaaaattaa 69295
>ref|NM_027086.1| Mus musculus ubiquitin-like 7 (bone marrow stromal cell-derived) (Ubl7), mRNA dbj|AK009025.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2300004C15 product:UBIQUITIN-LIKE PROTEIN SB132 homolog [Homo sapiens], full insert sequence Length = 1316 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1144 cctgcaaggcatgctggagagcttgg 1169 |||||| ||||||||||||||||||| Sbjct: 1034 cctgcagggcatgctggagagcttgg 1009
>gb|AC074283.3| Oryza sativa chromosome 10 clone OSJNBa0087H07, complete sequence Length = 156654 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1196 tttgttgttcttttgggtgggtgcga 1221 |||||||||||||||||||| ||||| Sbjct: 46379 tttgttgttcttttgggtggatgcga 46354
>gb|BC016456.1| Mus musculus ubiquitin-like 7 (bone marrow stromal cell-derived), mRNA (cDNA clone MGC:25506 IMAGE:4912715), complete cds Length = 1340 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1144 cctgcaaggcatgctggagagcttgg 1169 |||||| ||||||||||||||||||| Sbjct: 1019 cctgcagggcatgctggagagcttgg 994
>dbj|AK186418.1| Mus musculus cDNA, clone:Y0G0137E09, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000069445, based on BLAT search Length = 282 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1144 cctgcaaggcatgctggagagcttgg 1169 |||||| ||||||||||||||||||| Sbjct: 191 cctgcagggcatgctggagagcttgg 166
>gb|BC092024.1| Xenopus laevis hypothetical protein MGC84941, mRNA (cDNA clone MGC:84941 IMAGE:6323204), complete cds Length = 2753 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Plus Query: 864 tgaagaggctgcagcagctgctcctg 889 ||||||||||| |||||||||||||| Sbjct: 455 tgaagaggctggagcagctgctcctg 480
>emb|AL928826.9| Mouse DNA sequence from clone RP23-456N9 on chromosome 2, complete sequence Length = 180533 Score = 44.1 bits (22), Expect = 2.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2418 aaattaatttttgtagtcaaag 2439 |||||||||||||||||||||| Sbjct: 31036 aaattaatttttgtagtcaaag 31057
>gb|AC122534.5| Mus musculus BAC clone RP24-539A10 from 9, complete sequence Length = 174471 Score = 44.1 bits (22), Expect = 2.5 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1144 cctgcaaggcatgctggagagcttgg 1169 |||||| ||||||||||||||||||| Sbjct: 167651 cctgcagggcatgctggagagcttgg 167626
>gb|AC182650.2| Populus trichocarpa clone Pop1-117O4, complete sequence Length = 101624 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2478 gcgtttatgaaaattattttt 2498 ||||||||||||||||||||| Sbjct: 12986 gcgtttatgaaaattattttt 12966
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gccgcggcggcgagctccaac 131 ||||||||||||||||||||| Sbjct: 307280 gccgcggcggcgagctccaac 307300
>gb|AC146816.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1434D10 map near E1419S, complete sequence Length = 133421 Score = 42.1 bits (21), Expect = 9.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 89 ggaggcggcggcaagcaggagagccgcggcggcgagc 125 ||||||||||||| ||||||| | |||||||||||| Sbjct: 31135 ggaggcggcggcaggcaggaggccggcggcggcgagc 31171
>gb|AC147804.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0070G02 map near S13580, complete sequence Length = 73686 Score = 42.1 bits (21), Expect = 9.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 89 ggaggcggcggcaagcaggagagccgcggcggcgagc 125 ||||||||||||| ||||||| | |||||||||||| Sbjct: 70306 ggaggcggcggcaggcaggaggccggcggcggcgagc 70342
>ref|XM_584224.2| PREDICTED: Bos taurus similar to chromodomain protein, Y chromosome-like isoform b (LOC539013), mRNA Length = 3302 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1280 cgccacaccgagaagcagaag 1300 ||||||||||||||||||||| Sbjct: 433 cgccacaccgagaagcagaag 453
>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02, complete sequence Length = 93826 Score = 42.1 bits (21), Expect = 9.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 861 tggtgaagaggctgcagcagctgct 885 |||||||||||| |||||||||||| Sbjct: 11795 tggtgaagaggcagcagcagctgct 11819
>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05, complete sequence Length = 163130 Score = 42.1 bits (21), Expect = 9.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 861 tggtgaagaggctgcagcagctgct 885 |||||||||||| |||||||||||| Sbjct: 106152 tggtgaagaggcagcagcagctgct 106176
>gb|AC162789.4| Mus musculus chromosome 1, clone RP24-323I23, complete sequence Length = 170236 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2360 atatgtatatttaacctttat 2380 ||||||||||||||||||||| Sbjct: 68897 atatgtatatttaacctttat 68877
>gb|AY234813.1| Ambystoma macrodactylum macrodactylum clone H18 microsatellite sequence Length = 589 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 527 acaagccttcttagaaagaca 547 ||||||||||||||||||||| Sbjct: 417 acaagccttcttagaaagaca 397
>ref|XM_538419.2| PREDICTED: Canis familiaris similar to solute carrier family 41, member 2 (LOC481298), mRNA Length = 2821 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2198 ccaggtttgaggaaacagagt 2218 ||||||||||||||||||||| Sbjct: 2377 ccaggtttgaggaaacagagt 2397
>gb|AC123840.4| Mus musculus BAC clone RP23-399K5 from chromosome 13, complete sequence Length = 191185 Score = 42.1 bits (21), Expect = 9.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1095 gcagggttcatggcagtgccaggaa 1119 ||||||||| ||||||||||||||| Sbjct: 72000 gcagggttcttggcagtgccaggaa 72024
>gb|AC006988.3| Homo sapiens BAC clone RP11-174I14 from 7, complete sequence Length = 107430 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2237 aagcgtccctttggaaggcct 2257 ||||||||||||||||||||| Sbjct: 100991 aagcgtccctttggaaggcct 101011
>gb|AC025853.17| Homo sapiens chromosome 8, clone RP11-353K12, complete sequence Length = 173681 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 860 ctggtgaagaggctgcagcag 880 ||||||||||||||||||||| Sbjct: 165055 ctggtgaagaggctgcagcag 165075
>gb|AC092053.3| Homo sapiens chromosome 3 clone RP11-331G2, complete sequence Length = 176593 Score = 42.1 bits (21), Expect = 9.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2384 tagtcttggaattttatattatgaa 2408 ||||||||||||||| ||||||||| Sbjct: 58632 tagtcttggaattttttattatgaa 58656
>dbj|AB076248.1| Mus musculus DNA, BAC clone:No.251,465 Length = 158570 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2096 cctggagttcggccacagggg 2116 ||||||||||||||||||||| Sbjct: 37163 cctggagttcggccacagggg 37183
>gb|AC063948.44| Homo sapiens 12 BAC RP11-321F8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146502 Score = 42.1 bits (21), Expect = 9.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2329 aatagaaattagatatttgacacag 2353 |||||||||||||||||| |||||| Sbjct: 110343 aatagaaattagatatttaacacag 110367
>gb|AC104850.2| Homo sapiens chromosome 3 clone RP11-241K18, complete sequence Length = 173580 Score = 42.1 bits (21), Expect = 9.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2384 tagtcttggaattttatattatgaa 2408 ||||||||||||||| ||||||||| Sbjct: 21728 tagtcttggaattttttattatgaa 21704
>gb|AC068647.10| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132745 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 585 actcccaagtcaccctcatct 605 ||||||||||||||||||||| Sbjct: 28816 actcccaagtcaccctcatct 28836
>gb|AC114977.2| Homo sapiens chromosome 5 clone RP11-49C20, complete sequence Length = 180697 Score = 42.1 bits (21), Expect = 9.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2359 aatatgtatatttaacctttatctt 2383 |||||||||||||||| |||||||| Sbjct: 88365 aatatgtatatttaacatttatctt 88389
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 caacaagccttcttagaaaga 545 ||||||||||||||||||||| Sbjct: 3766148 caacaagccttcttagaaaga 3766168
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1916 gagcacccaaggttgctcatc 1936 ||||||||||||||||||||| Sbjct: 13756822 gagcacccaaggttgctcatc 13756842
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 9.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 861 tggtgaagaggctgcagcagctgct 885 |||||||||||| |||||||||||| Sbjct: 22516745 tggtgaagaggcagcagcagctgct 22516769
>gb|AC100802.2| Homo sapiens chromosome 8, clone CTB-2109K7, complete sequence Length = 203506 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 860 ctggtgaagaggctgcagcag 880 ||||||||||||||||||||| Sbjct: 190997 ctggtgaagaggctgcagcag 190977
>gb|AC161276.2| Pan troglodytes BAC clone CH251-520C21 from chromosome 7, complete sequence Length = 210088 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2237 aagcgtccctttggaaggcct 2257 ||||||||||||||||||||| Sbjct: 105127 aagcgtccctttggaaggcct 105107
>emb|AL021684.1|ATF6H11 Arabidopsis thaliana DNA chromosome 5, BAC clone F6H11 (ESSAII project) Length = 118086 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2481 tttatgaaaattatttttgtg 2501 ||||||||||||||||||||| Sbjct: 110271 tttatgaaaattatttttgtg 110251
>gb|AC116374.10| Mus musculus chromosome 1, clone RP23-294I9, complete sequence Length = 179835 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2360 atatgtatatttaacctttat 2380 ||||||||||||||||||||| Sbjct: 143429 atatgtatatttaacctttat 143409
>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0406D01 Length = 163932 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1916 gagcacccaaggttgctcatc 1936 ||||||||||||||||||||| Sbjct: 70891 gagcacccaaggttgctcatc 70911
>dbj|AB010075.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA24 Length = 84440 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2481 tttatgaaaattatttttgtg 2501 ||||||||||||||||||||| Sbjct: 9534 tttatgaaaattatttttgtg 9554
>gb|AC015842.9|AC015842 Homo sapiens chromosome 17, clone RP11-350B3, complete sequence Length = 115933 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2389 ttggaattttatattatgaaa 2409 ||||||||||||||||||||| Sbjct: 86479 ttggaattttatattatgaaa 86459
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 caacaagccttcttagaaaga 545 ||||||||||||||||||||| Sbjct: 507844 caacaagccttcttagaaaga 507824
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1581 caagcatggacagtggaagca 1601 ||||||||||||||||||||| Sbjct: 32561 caagcatggacagtggaagca 32581
>gb|AC005900.1|AC005900 Homo sapiens chromosome 17, clone hRPK.998_F_8, complete sequence Length = 175066 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2392 gaattttatattatgaaaaaa 2412 ||||||||||||||||||||| Sbjct: 139068 gaattttatattatgaaaaaa 139048
>gb|AC140337.3| Mus musculus BAC clone RP23-238H7 from 1, complete sequence Length = 229594 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1698 tcttcaagacactcacattca 1718 ||||||||||||||||||||| Sbjct: 83990 tcttcaagacactcacattca 84010
>emb|AL935053.6| Zebrafish DNA sequence from clone CH211-162M14, complete sequence Length = 138341 Score = 42.1 bits (21), Expect = 9.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 2488 aaattatttttgtgcgtaagatgtttgat 2516 |||||||||||||||| || ||||||||| Sbjct: 10433 aaattatttttgtgcgaaaaatgtttgat 10405
>emb|AL591953.8| Mouse DNA sequence from clone RP23-381N9 on chromosome 5, complete sequence Length = 172613 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1061 gaggttagctgcttttctcct 1081 ||||||||||||||||||||| Sbjct: 155414 gaggttagctgcttttctcct 155434
>emb|AL645531.10| Mouse DNA sequence from clone RP23-191E19 on chromosome 4, complete sequence Length = 97801 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2096 cctggagttcggccacagggg 2116 ||||||||||||||||||||| Sbjct: 53260 cctggagttcggccacagggg 53280
>emb|AL590079.3|CNS07EG6 Human chromosome 14 DNA sequence Partial sequence from BAC C-2502D3 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 96532 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 692 cctcctgccctctcctggact 712 ||||||||||||||||||||| Sbjct: 90004 cctcctgccctctcctggact 89984
>emb|AL359399.3|CNS05TEV Human chromosome 14 DNA sequence BAC C-2223O18 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 134213 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 692 cctcctgccctctcctggact 712 ||||||||||||||||||||| Sbjct: 27695 cctcctgccctctcctggact 27675
>emb|AL645975.9| Mouse DNA sequence from clone RP23-154F12 on chromosome 11, complete sequence Length = 44496 Score = 42.1 bits (21), Expect = 9.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 867 agaggctgcagcagctgctcc 887 ||||||||||||||||||||| Sbjct: 16409 agaggctgcagcagctgctcc 16389 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 425,780,147 Number of extensions: 23544000 Number of successful extensions: 131553 Number of sequences better than 10.0: 61 Number of HSP's gapped: 131549 Number of HSP's successfully gapped: 69 Length of query: 2571 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2548 Effective length of database: 18,503,978,556 Effective search space: 47148137360688 Effective search space used: 47148137360688 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
