ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf8l20 |
|---|---|
| Clone Library Name | barley_pub |
>P62317:SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 - Mus musculus (Mouse)| Length = 118 Score = 167 bits (423), Expect = 3e-41 Identities = 78/90 (86%), Positives = 87/90 (96%) Frame = +1 Query: 148 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 327 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTEVPK+GKG Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83 Query: 328 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 417 KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>P62316:SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 - Homo sapiens (Human)| Length = 118 Score = 167 bits (423), Expect = 3e-41 Identities = 78/90 (86%), Positives = 87/90 (96%) Frame = +1 Query: 148 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 327 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTEVPK+GKG Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83 Query: 328 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 417 KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>Q3SZF8:SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 - Bos taurus (Bovine)| Length = 118 Score = 167 bits (423), Expect = 3e-41 Identities = 78/90 (86%), Positives = 87/90 (96%) Frame = +1 Query: 148 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 327 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTEVPK+GKG Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKG 83 Query: 328 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 417 KKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 84 KKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
>Q9VI10:SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 - Drosophila| melanogaster (Fruit fly) Length = 119 Score = 167 bits (422), Expect = 4e-41 Identities = 78/90 (86%), Positives = 86/90 (95%) Frame = +1 Query: 148 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 327 F+TGPLS+L SVKNNTQVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTE+P+TGKG Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKG 82 Query: 328 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 417 KKK PVNKDRFISKMFLRGDSVI+VLRNP Sbjct: 83 KKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
>Q18786:SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 - Caenorhabditis| elegans Length = 118 Score = 157 bits (397), Expect = 3e-38 Identities = 75/90 (83%), Positives = 83/90 (92%) Frame = +1 Query: 148 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 327 F+ GPLS+L SVKNN QVLINCRNNKKLLGR++AFDRHCNMVLENV+EMWTEVPKTGKG Sbjct: 24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKG 83 Query: 328 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 417 KKKA V KDRFISKMFLRGDSVI+V++NP Sbjct: 84 KKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
>O14036:SMD2_SCHPO Probable small nuclear ribonucleoprotein Sm D2 -| Schizosaccharomyces pombe (Fission yeast) Length = 115 Score = 130 bits (326), Expect = 6e-30 Identities = 63/90 (70%), Positives = 74/90 (82%) Frame = +1 Query: 148 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 327 FS GPLS+L +VKN+ QVLINCRNNKKLL R++AFDRH NMVLENV+EMWTE +T G Sbjct: 25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG 84 Query: 328 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 417 KK +NKDRFISKMFLRGD V++V+R P Sbjct: 85 -KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
>Q06217:SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 - Saccharomyces cerevisiae| (Baker's yeast) Length = 110 Score = 102 bits (255), Expect = 1e-21 Identities = 49/90 (54%), Positives = 67/90 (74%) Frame = +1 Query: 148 FSTGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKG 327 F GP+SL+ ++ T V+I+ RNN K++ R++AFDRHCNMVLENV+E+WTE Sbjct: 26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE------- 78 Query: 328 KKKALPVNKDRFISKMFLRGDSVIIVLRNP 417 KK +N++RFISK+FLRGDSVI+VL+ P Sbjct: 79 KKGKNVINRERFISKLFLRGDSVIVVLKTP 108
>P62311:LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 - Mus musculus (Mouse)| Length = 102 Score = 50.1 bits (118), Expect = 7e-06 Identities = 27/82 (32%), Positives = 50/82 (60%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339 PL L+ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query: 340 LPVNKDRFISKMFLRGDSVIIV 405 K R I +F+RGD V++V Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>P62310:LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 - Homo sapiens (Human)| Length = 102 Score = 50.1 bits (118), Expect = 7e-06 Identities = 27/82 (32%), Positives = 50/82 (60%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339 PL L+ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query: 340 LPVNKDRFISKMFLRGDSVIIV 405 K R I +F+RGD V++V Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>Q32PE9:LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 - Bos taurus (Bovine)| Length = 102 Score = 50.1 bits (118), Expect = 7e-06 Identities = 27/82 (32%), Positives = 50/82 (60%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339 PL L+ +S+ + ++ + RN+++L GR+ A+D+H NM+L +V E T + + ++ Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query: 340 LPVNKDRFISKMFLRGDSVIIV 405 K R I +F+RGD V++V Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLV 95
>Q9Y7M4:LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3 -| Schizosaccharomyces pombe (Fission yeast) Length = 93 Score = 49.3 bits (116), Expect = 1e-05 Identities = 29/82 (35%), Positives = 47/82 (57%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339 PL L+ +S+ + V + R +++L GR+ A+D H NMVL + E+ T K KA Sbjct: 10 PLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKA 67 Query: 340 LPVNKDRFISKMFLRGDSVIIV 405 L + + +F+RGDSVI++ Sbjct: 68 LKTIRKHY-EMLFVRGDSVILI 88
>P57743:LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 - Saccharomyces cerevisiae| (Baker's yeast) Length = 89 Score = 40.4 bits (93), Expect = 0.006 Identities = 24/82 (29%), Positives = 44/82 (53%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339 PL LL +++ + +V I R + L+G ++AFD HCN+VL + E ++ + Sbjct: 4 PLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSE--- 58 Query: 340 LPVNKDRFISKMFLRGDSVIIV 405 +R +F+RGD+V ++ Sbjct: 59 ----SERRCEMVFIRGDTVTLI 76
>Q29329:SMD2_PIG Small nuclear ribonucleoprotein Sm D2 - Sus scrofa (Pig)| Length = 50 Score = 40.0 bits (92), Expect = 0.008 Identities = 18/27 (66%), Positives = 20/27 (74%) Frame = +1 Query: 148 FSTGPLSLLMMSVKNNTQVLINCRNNK 228 F+TGPLS+ S K TQVLINCRN K Sbjct: 24 FNTGPLSVXTQSXKTXTQVLINCRNTK 50
>P15714:LP61_EIMTE Antigen LPMC-61 - Eimeria tenella| Length = 255 Score = 38.1 bits (87), Expect = 0.029 Identities = 23/82 (28%), Positives = 38/82 (46%) Frame = +3 Query: 150 QHRAPVPAHDERQEQYPGTYQLPEQQEATWSHESI*PSLQHGSRER*GDVD*GSKDWQRQ 329 Q + P E+Q+Q Q PEQQ+ WS ++ Q ++ + W +Q Sbjct: 148 QQQQQWPEQPEQQQQQ----QWPEQQQQQWSDQNQQQQAQQWQAQQ-------QQQWPQQ 196 Query: 330 EEGPSSEQGQVHQQDVPPRRLG 395 ++ P +Q Q QQD+ P +G Sbjct: 197 QQQPQQQQQQQQQQDLGPDGVG 218
>Q97BU5:RUXX_THEVO Putative snRNP Sm-like protein - Thermoplasma volcanium| Length = 83 Score = 34.7 bits (78), Expect = 0.32 Identities = 23/85 (27%), Positives = 44/85 (51%) Frame = +1 Query: 151 STGPLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGK 330 +T P+ +L ++ N VLI+ + N++ G + +D + N+VL+N E+ G+ Sbjct: 7 NTKPMDVLKNALSRN--VLIDVKGNREYSGILEGYDVYMNVVLQNASEII-------NGE 57 Query: 331 KKALPVNKDRFISKMFLRGDSVIIV 405 K + ++ +RGD+VI V Sbjct: 58 NKGV-------FDRILVRGDNVIFV 75
>Q8PZZ9:RUXX_METMA Putative snRNP Sm-like protein - Methanosarcina mazei| (Methanosarcina frisia) Length = 72 Score = 33.9 bits (76), Expect = 0.55 Identities = 21/82 (25%), Positives = 42/82 (51%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339 PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----REGEVVSK- 56 Query: 340 LPVNKDRFISKMFLRGDSVIIV 405 S + +RGD+V+ V Sbjct: 57 --------FSSVVIRGDNVVYV 70
>Q8TL47:RUXX_METAC Putative snRNP Sm-like protein - Methanosarcina acetivorans| Length = 72 Score = 33.9 bits (76), Expect = 0.55 Identities = 21/82 (25%), Positives = 42/82 (51%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339 PL +L ++ +T V++ + ++ G ++ +D H N+VL+N E+ + G+ K Sbjct: 5 PLDILNNAL--DTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-----RDGEVVSK- 56 Query: 340 LPVNKDRFISKMFLRGDSVIIV 405 S + +RGD+V+ V Sbjct: 57 --------FSSVVIRGDNVVYV 70
>Q94VJ5:NU2M_VARBN NADH-ubiquinone oxidoreductase chain 2 - Varanus bengalensis| nebulosis (Clouded monitor) Length = 345 Score = 33.5 bits (75), Expect = 0.71 Identities = 30/93 (32%), Positives = 47/93 (50%) Frame = -2 Query: 464 ETLLGHTRCRHRLNHLGFLRTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLT 285 +T L T + HLG++ TMMT +P N+ L+NL L ++P+ T + + LT Sbjct: 172 QTQLRKTMAFSSIAHLGWMITMMTIAP--NLTLLNLIL------YIPMTSL-TMLIMHLT 222 Query: 284 FSRTMLQ*RSNALMRPSSFLLFRQLISTWVLFL 186 S+T+ NA++ PS L L +L L Sbjct: 223 MSKTL----QNAMLIPSHSLTATSLFLLSLLSL 251
>Q05856:RSMB_DROME Small nuclear ribonucleoprotein-associated protein B - Drosophila| melanogaster (Fruit fly) Length = 199 Score = 33.5 bits (75), Expect = 0.72 Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Frame = +1 Query: 193 NTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKD-RFIS 369 N +V I ++++ +G +AFD+H N++L + E + + K +P ++ R + Sbjct: 14 NYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIRSKNSKVPEREEKRVLG 68 Query: 370 KMFLRGDSVI 399 + LRG++++ Sbjct: 69 FVLLRGENIV 78
>P57670:RUXX_THEAC Putative snRNP Sm-like protein - Thermoplasma acidophilum| Length = 83 Score = 33.1 bits (74), Expect = 0.94 Identities = 22/82 (26%), Positives = 42/82 (51%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339 P+ +L ++ N VLI+ + N++ G + +D + N+VL+N E+ G+ K Sbjct: 10 PMDVLKSALSRN--VLIDVKGNREYSGILEGYDVYMNIVLQNASEII-------NGENKG 60 Query: 340 LPVNKDRFISKMFLRGDSVIIV 405 + ++ +RGD+VI V Sbjct: 61 V-------YDRVLVRGDNVIFV 75
>P17136:RSMB_RAT Small nuclear ribonucleoprotein-associated protein B - Rattus| norvegicus (Rat) Length = 214 Score = 33.1 bits (74), Expect = 0.94 Identities = 16/61 (26%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 +N + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 5 QNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 60 Query: 397 I 399 + Sbjct: 61 V 61
>P24715:RUXG_MEDSA Probable small nuclear ribonucleoprotein G - Medicago sativa| (Alfalfa) Length = 81 Score = 32.7 bits (73), Expect = 1.2 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = +1 Query: 199 QVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMF 378 Q+ IN + N+ ++G +R FD+ N+V++N E + N+ I + Sbjct: 17 QLQINLKANRMIVGTLRGFDQFMNLVVDNTVE---------------VNGNEKNDIGMVV 61 Query: 379 LRGDSVIIV 405 +RG+SV+ V Sbjct: 62 IRGNSVVTV 70
>Q9TU66:RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B' - Monodelphis| domestica (Short-tailed gray opossum) Length = 240 Score = 32.7 bits (73), Expect = 1.2 Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 8/82 (9%) Frame = +1 Query: 178 MSVKNNTQVL--INCR------NNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKK 333 M+V ++++L I+CR + + +G +AFD+H N++L + E PK K + Sbjct: 1 MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60 Query: 334 KALPVNKDRFISKMFLRGDSVI 399 + + R + + LRG++++ Sbjct: 61 R----EEKRVLGLVLLRGENLV 78
>P91918:RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B -| Caenorhabditis elegans Length = 160 Score = 32.3 bits (72), Expect = 1.6 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +1 Query: 193 NTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGK---GKKKALPVNKDRF 363 N ++ I ++ + +G +AFD+H N++L E PK GK G++K R Sbjct: 14 NYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEK-------RI 66 Query: 364 ISKMFLRGDSVI 399 + + +RG+ ++ Sbjct: 67 LGLVLVRGEHIV 78
>Q63617:HYOU1_RAT Hypoxia up-regulated protein 1 precursor - Rattus norvegicus (Rat)| Length = 999 Score = 31.6 bits (70), Expect = 2.7 Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Frame = +3 Query: 105 GGRSSCQCEEGGGGVQHRAPVPAHDERQEQYPGTYQLPEQQEATWSHESI*P-SLQHGSR 281 GG SS E G VQ PA + E +L E+ EA S P S G Sbjct: 587 GGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQG-ELKEEAEAPMEDTSQPPPSEPKGDA 645 Query: 282 ER*GDVD*GSKDWQRQEEGPSSEQGQVHQQDVPP 383 R G+ + + E +E+GQ + VPP Sbjct: 646 AREGETPDEKESGDKSEAQKPNEKGQAGPEGVPP 679
>Q9XS63:CMGA_HORSE Chromogranin-A precursor - Equus caballus (Horse)| Length = 448 Score = 31.6 bits (70), Expect = 2.7 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Frame = +3 Query: 117 SCQCEEGGGGVQHRAPVPAHDERQEQYPGTYQLP-EQQEATWSHESI*-PSLQHGSRER* 290 S + EE G P A + QE Q P E++EA +H PS +H + Sbjct: 135 SKEVEENGEDADGARPQAALEPEQESRVEDAQAPGEEKEAINTHSPTRLPSQKHPDPQAE 194 Query: 291 GDVD*GSKDWQRQEEGPSSEQGQVHQQDVPPRRLGHHCSKEPQ 419 GD D S+ +E+G +E+GQ +++ G E + Sbjct: 195 GDSDSPSQGLVDREKGLGAERGQQAKREEEEDEAGEKADAEEE 237
>O26745:RUXX_METTH Putative snRNP Sm-like protein - Methanobacterium| thermoautotrophicum Length = 81 Score = 31.6 bits (70), Expect = 2.7 Identities = 19/82 (23%), Positives = 43/82 (52%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339 PL L S+ N+ V+I + +++ G +++FD H N+VL + E+ + G+ ++ Sbjct: 14 PLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEEL-----EDGEVTRR- 65 Query: 340 LPVNKDRFISKMFLRGDSVIIV 405 + + +RGD+++ + Sbjct: 66 --------LGTVLIRGDNIVYI 79
>Q9PV94:RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' - Gallus| gallus (Chicken) Length = 240 Score = 31.6 bits (70), Expect = 2.7 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>Q7M926:SYL_WOLSU Leucyl-tRNA synthetase - Wolinella succinogenes| Length = 819 Score = 31.2 bits (69), Expect = 3.5 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +3 Query: 135 GGGGVQHRAPVPAHDERQEQYPGTYQLPEQQ 227 G G V VPAHDER ++ YQLP++Q Sbjct: 339 GSGAVM---AVPAHDERDFEFAKKYQLPQKQ 366
>P63164:RSMN_RAT Small nuclear ribonucleoprotein-associated protein N - Rattus| norvegicus (Rat) Length = 240 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>Q5R6I0:RSMN_PONPY Small nuclear ribonucleoprotein-associated protein N - Pongo| pygmaeus (Orangutan) Length = 240 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>P63163:RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N - Mus musculus| (Mouse) Length = 240 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>Q60HD3:RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N - Macaca| fascicularis (Crab eating macaque) (Cynomolgus monkey) Length = 240 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>P63162:RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N - Homo sapiens| (Human) Length = 240 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>Q17QN3:RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N - Bos taurus| (Bovine) Length = 240 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>P40018:RSMB_YEAST Small nuclear ribonucleoprotein-associated protein B -| Saccharomyces cerevisiae (Baker's yeast) Length = 196 Score = 31.2 bits (69), Expect = 3.6 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKD----------RFI 366 ++ + +G++ AFD+H N+VL E VPKT K + +KD R + Sbjct: 25 QDGRVYIGQLMAFDKHMNLVLNECIE--ERVPKTQLDKLRPRKDSKDGTTLNIKVEKRVL 82 Query: 367 SKMFLRGDSVI 399 LRG+ ++ Sbjct: 83 GLTILRGEQIL 93
>P27048:RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B - Mus musculus| (Mouse) Length = 231 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>Q9N1Q0:RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' - Macropus| eugenii (Tammar wallaby) Length = 240 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>P14678:RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B' - Homo| sapiens (Human) Length = 240 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>Q9TU67:RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B' - Erinaceus| europaeus (Western European hedgehog) Length = 240 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>Q58DW4:RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' - Bos taurus| (Bovine) Length = 240 Score = 31.2 bits (69), Expect = 3.6 Identities = 15/61 (24%), Positives = 33/61 (54%) Frame = +1 Query: 217 RNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSV 396 ++ + +G +AFD+H N++L + E PK K ++ + R + + LRG+++ Sbjct: 22 QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER----EEKRVLGLVLLRGENL 77 Query: 397 I 399 + Sbjct: 78 V 78
>O08656:HXA1_RAT Homeobox protein Hox-A1 - Rattus norvegicus (Rat)| Length = 333 Score = 30.8 bits (68), Expect = 4.6 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = +3 Query: 135 GGGGVQHRAPVPAHDERQEQYPGTYQLPEQQEATWSHESI*PS 263 GG GVQ +P H P TYQ ++SH S PS Sbjct: 55 GGRGVQITSPHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPS 97
>P40089:LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 - Saccharomyces cerevisiae| (Baker's yeast) Length = 93 Score = 30.8 bits (68), Expect = 4.7 Identities = 22/87 (25%), Positives = 45/87 (51%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLLGRMRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 339 PL ++ ++ N +VLI ++N++ G + FD N++LE+ E W P+ +K Sbjct: 8 PLEVIDKTI--NQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE-WLIDPEDESRNEKV 64 Query: 340 LPVNKDRFISKMFLRGDSVIIVLRNPK 420 + + +M L G+++ I++ K Sbjct: 65 M-----QHHGRMLLSGNNIAILVPGGK 86
>P06680:PRPH_MESAU Acidic proline-rich protein HP43A precursor - Mesocricetus auratus| (Golden hamster) Length = 183 Score = 30.4 bits (67), Expect = 6.0 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = +3 Query: 174 HDERQEQYPGTYQLPEQQEATWSHESI*PSLQHGSRER*GDVD*GSKDWQRQEEGPSSEQ 353 H + + PG Q P QQE + P Q G ++ G +EGP ++ Sbjct: 77 HQKPRPPKPGNQQGPPQQEGQQQNRPPKPGNQEGPPQQEGQQQ-NRPPKPGNQEGPPQQE 135 Query: 354 GQVHQQDVPPR 386 GQ QQ+ PP+ Sbjct: 136 GQ--QQNRPPK 144
>Q9U620:MTCU_CALSI Copper-specific metallothionein-2 - Callinectes sapidus (Blue crab)| Length = 64 Score = 30.4 bits (67), Expect = 6.0 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = -3 Query: 370 C**TCPCSLEGPSSCLCQSLEPQSTSP*RSREPC-CNDGQMLS-CDQVASCCSGS 212 C +C C G C C S +T P S++ C CNDG S C SCC G+ Sbjct: 5 CGTSCKC---GSGKCCCGSTCNCTTCP--SKQSCSCNDGACGSACQCKTSCCCGA 54
>P98167:SSPO_BOVIN SCO-spondin precursor - Bos taurus (Bovine)| Length = 5146 Score = 30.0 bits (66), Expect = 7.9 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Frame = -3 Query: 277 EPCCNDGQMLS----CDQVASCCSGS**VPGYC---S*RSS*AGTGARC*TPPPPSSHWQ 119 E C DG L CD V C G PG+C S + AGT P P + W+ Sbjct: 1493 EVSCVDGTCLGAIQLCDGVWDCLDGGDEGPGHCPLPSLPTPPAGT-----LPGPSAVSWK 1547 Query: 118 LLLPP 104 L LPP Sbjct: 1548 LHLPP 1552
>P87173:YB18_SCHPO Uncharacterized protein C3D6.08c - Schizosaccharomyces pombe| (Fission yeast) Length = 140 Score = 30.0 bits (66), Expect = 8.0 Identities = 11/28 (39%), Positives = 22/28 (78%) Frame = +1 Query: 199 QVLINCRNNKKLLGRMRAFDRHCNMVLE 282 +V++ R+ KKL+G +R+FD+ N++L+ Sbjct: 23 KVIVVLRDGKKLIGILRSFDQFANLMLQ 50
>Q9VLV5:RUXE_DROME Probable small nuclear ribonucleoprotein E - Drosophila| melanogaster (Fruit fly) Length = 94 Score = 30.0 bits (66), Expect = 8.0 Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +1 Query: 160 PLSLLMMSVKNNTQVLINCRNNKKLL--GRMRAFDRHCNMVLENVREMWTEVPKTGKGKK 333 P++L+ ++N ++V + N L G + FD + N+VL++ E++ + Sbjct: 16 PINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVK--------- 66 Query: 334 KALPVNKDRFISKMFLRGDSVIIV 405 + R + ++ L+GD++ ++ Sbjct: 67 ----TRQRRNLGRIMLKGDNITLI 86
>Q5R628:LSM5_PONPY U6 snRNA-associated Sm-like protein LSm5 - Pongo pygmaeus| (Orangutan) Length = 91 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 151 STGPLSLLMMSVKNN---TQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 294 +T P LL + + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 6 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>P62322:LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 - Mus musculus (Mouse)| Length = 91 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 151 STGPLSLLMMSVKNN---TQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 294 +T P LL + + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 6 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>Q9Y4Y9:LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 - Homo sapiens (Human)| Length = 91 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 151 STGPLSLLMMSVKNN---TQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 294 +T P LL + + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 6 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>Q2HJH0:LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 - Bos taurus (Bovine)| Length = 91 Score = 30.0 bits (66), Expect = 8.0 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 151 STGPLSLLMMSVKNN---TQVLINCRNNKKLLGRMRAFDRHCNMVLENVRE 294 +T P LL + + + +++ I +++K+++G + FD NMVLE+V E Sbjct: 6 TTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 100,849,778 Number of extensions: 2106744 Number of successful extensions: 5905 Number of sequences better than 10.0: 52 Number of HSP's gapped: 5886 Number of HSP's successfully gapped: 52 Length of query: 220 Length of database: 100,686,439 Length adjustment: 109 Effective length of query: 111 Effective length of database: 70,788,284 Effective search space: 7857499524 Effective search space used: 7857499524 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
