ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf8k19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os03g58540:12003.t05109:unspliced-genomic small GTP-bind... 35 1.0
2LOC_Os03g07050:12003.t00571:unspliced-genomic retrotransposo... 34 2.0
3LOC_Os10g32830:12010.t02591:unspliced-genomic protein kinase... 33 3.7
4LOC_Os06g36000:12006.t03297:unspliced-genomic transcriptiona... 33 3.7
5LOC_Os02g09490:12002.t00796:unspliced-genomic cinnamyl alcoh... 33 3.7
6LOC_Os03g03770:12003.t00259:unspliced-genomic NADH-ubiquinon... 32 4.7
7LOC_Os01g13830:12001.t01242:unspliced-genomic expressed protein 32 5.1
8LOC_Os06g44540:12006.t04141:unspliced-genomic protein HOTHEA... 32 7.0
9LOC_Os07g10600:12007.t00934:unspliced-genomic cycloartenol-C... 25 8.2
10LOC_Os05g08800:12005.t00757:unspliced-genomic expressed protein 31 9.7

>LOC_Os03g58540:12003.t05109:unspliced-genomic small GTP-binding protein domain, putative, expressed|
          Length = 4080
 Score = 34.5 bits (69), Expect = 1.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3 / -1

                                          
Query: 771 QTKLVIISDEPKISKPSSLGMFLISPVTSLC 679
           Q+K++ IS+  KI KP+  G+  +SP   LC
Sbjct: 684 QSKMLCISNTTKIYKPTGTGILSVSPAKPLC 592



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>LOC_Os03g07050:12003.t00571:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 4895

 Score = 33.6 bits (67), Expect = 2.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2 / +1

                                   
Query: 638  CRSLFYLVLRCCNVHRLVTGEMR 706
            CR +F ++ RCCN +++++G  R
Sbjct: 3325 CRPMFKILRRCCNSYKIISGRSR 3393



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>LOC_Os10g32830:12010.t02591:unspliced-genomic protein kinase/ ribokinase, putative|
          Length = 3288

 Score = 32.7 bits (65), Expect = 3.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3 / -1

                                         
Query: 606 IFLKSKPRQEKQGGGGTSRNVGVIHHRHLE 517
           I+L  +PR E Q GG   R  GV   RHL+
Sbjct: 516 IYLGDEPRVEAQAGGSCQRVPGVATSRHLQ 427



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>LOC_Os06g36000:12006.t03297:unspliced-genomic transcriptional factor TINY, putative|
          Length = 1102

 Score = 32.7 bits (65), Expect = 3.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2 / +3

                                               
Query: 625 RRISKMHFLEVKTKARETRGWGDQSECRGNPSPAPR 518
           RR+++   L   T+   TR W   S CR + S  PR
Sbjct: 786 RRLARTRSLPRSTRTTTTRSWRRSSSCRPSTSSTPR 893



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>LOC_Os02g09490:12002.t00796:unspliced-genomic cinnamyl alcohol dehydrogenase, putative, expressed|
          Length = 3941

 Score = 32.7 bits (65), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3 / +3

                                  
Query: 588  PRQEKQGGGGTSRNVGVIHHRH 523
            PRQ ++GG G  R +  +HHRH
Sbjct: 3360 PRQLRRGGDGGRRRLAGLHHRH 3425



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>LOC_Os03g03770:12003.t00259:unspliced-genomic NADH-ubiquinone oxidoreductase B18 subunit, putative, expressed|
          Length = 4054

 Score = 31.8 bits (63), Expect(2) = 4.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3 / +1

                         
Query: 273 ACSWSPSSRRGRPK 314
           ACSW+P SRR RP+
Sbjct: 139 ACSWAPRSRRSRPR 180



 Score = 22.6 bits (43), Expect(2) = 4.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3 / +2

                                  
Query: 564  HPLVSLALVLTSRKCILLIRRV 629
            HPL  L       KC++L+RR+
Sbjct: 1115 HPLGPLV*ARQRPKCLMLMRRM 1180



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>LOC_Os01g13830:12001.t01242:unspliced-genomic expressed protein|
          Length = 4680

 Score = 32.2 bits (64), Expect = 5.1
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3 / -3

                                       
Query: 561 PHPLVSLALVLTSRKCILLIRRVNSSAV 644
           PHP V++ + L+S  CI L+RR ++S +
Sbjct: 526 PHPSVAMWVFLSSESCIHLLRRSSTSCL 443



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>LOC_Os06g44540:12006.t04141:unspliced-genomic protein HOTHEAD precursor, putative, expressed|
          Length = 3692

 Score = 31.8 bits (63), Expect = 7.0
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -3 / -1

                                                                       
Query: 741 PKISKPSSLGMFLISPVTSLCTLQHLSTR*NKERHSNSHAESAKCIFLKSKPRQEKQGGG 562
           P  S+ +S  M L++  T  CT   LS    + R  + HA  A         R+   GGG
Sbjct: 773 PNNSQKNSSDMTLVNLFTRFCTRISLSN*LREHRRHDRHAPRA*TTEGSEMQRKRGGGGG 594

                   
Query: 561 GTSRNVGV 538
           G   ++ V
Sbjct: 593 GRDTDLAV 570



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>LOC_Os07g10600:12007.t00934:unspliced-genomic cycloartenol-C-24-methyltransferase 1, putative, expressed|
          Length = 5826

 Score = 25.4 bits (49), Expect(2) = 8.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1 / +3

                              
Query: 725 LPHSVCFSSHQSPAYVHCS 669
           LP S   S  +SPA++HCS
Sbjct: 141 LPSSSSSSRVRSPAHMHCS 197



 Score = 23.1 bits (44), Expect(2) = 8.2
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -3 / +1

                          
Query: 597 KSKPRQEKQGGGGTS 553
           ++ PR+ ++GGGG++
Sbjct: 244 QTHPREREEGGGGSA 288



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>LOC_Os05g08800:12005.t00757:unspliced-genomic expressed protein|
          Length = 2306

 Score = 31.3 bits (62), Expect = 9.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3 / -2

                                                     
Query: 648 KERHSNSHAESAKCIFLKSKPRQEKQGGGGTSRNVGVIHHRH 523
           K++      E++  + L+SK R     GGG +R + +   RH
Sbjct: 388 KKKKKEKEKENSSIL*LRSKNRSSSSEGGGATRQIAMDGRRH 263


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 190,466,550
Number of extensions: 2477487
Number of successful extensions: 10918
Number of sequences better than 10.0: 10
Length of query: 292
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 243
Effective length of database: 52,856,264
Effective search space: 12844072152
Effective search space used: 12844072152
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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