Clone Name | FLbaf8k19 |
---|---|
Clone Library Name | barley_pub |
>LOC_Os03g58540:12003.t05109:unspliced-genomic small GTP-binding protein domain, putative, expressed| Length = 4080 Score = 34.5 bits (69), Expect = 1.0 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3 / -1 Query: 771 QTKLVIISDEPKISKPSSLGMFLISPVTSLC 679 Q+K++ IS+ KI KP+ G+ +SP LC Sbjct: 684 QSKMLCISNTTKIYKPTGTGILSVSPAKPLC 592
>LOC_Os03g07050:12003.t00571:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4895 Score = 33.6 bits (67), Expect = 2.0 Identities = 9/23 (39%), Positives = 17/23 (73%) Frame = +2 / +1 Query: 638 CRSLFYLVLRCCNVHRLVTGEMR 706 CR +F ++ RCCN +++++G R Sbjct: 3325 CRPMFKILRRCCNSYKIISGRSR 3393
>LOC_Os10g32830:12010.t02591:unspliced-genomic protein kinase/ ribokinase, putative| Length = 3288 Score = 32.7 bits (65), Expect = 3.7 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -3 / -1 Query: 606 IFLKSKPRQEKQGGGGTSRNVGVIHHRHLE 517 I+L +PR E Q GG R GV RHL+ Sbjct: 516 IYLGDEPRVEAQAGGSCQRVPGVATSRHLQ 427
>LOC_Os06g36000:12006.t03297:unspliced-genomic transcriptional factor TINY, putative| Length = 1102 Score = 32.7 bits (65), Expect = 3.7 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -2 / +3 Query: 625 RRISKMHFLEVKTKARETRGWGDQSECRGNPSPAPR 518 RR+++ L T+ TR W S CR + S PR Sbjct: 786 RRLARTRSLPRSTRTTTTRSWRRSSSCRPSTSSTPR 893
>LOC_Os02g09490:12002.t00796:unspliced-genomic cinnamyl alcohol dehydrogenase, putative, expressed| Length = 3941 Score = 32.7 bits (65), Expect = 3.7 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -3 / +3 Query: 588 PRQEKQGGGGTSRNVGVIHHRH 523 PRQ ++GG G R + +HHRH Sbjct: 3360 PRQLRRGGDGGRRRLAGLHHRH 3425
>LOC_Os03g03770:12003.t00259:unspliced-genomic NADH-ubiquinone oxidoreductase B18 subunit, putative, expressed| Length = 4054 Score = 31.8 bits (63), Expect(2) = 4.7 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +3 / +1 Query: 273 ACSWSPSSRRGRPK 314 ACSW+P SRR RP+ Sbjct: 139 ACSWAPRSRRSRPR 180 Score = 22.6 bits (43), Expect(2) = 4.7 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +3 / +2 Query: 564 HPLVSLALVLTSRKCILLIRRV 629 HPL L KC++L+RR+ Sbjct: 1115 HPLGPLV*ARQRPKCLMLMRRM 1180
>LOC_Os01g13830:12001.t01242:unspliced-genomic expressed protein| Length = 4680 Score = 32.2 bits (64), Expect = 5.1 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = +3 / -3 Query: 561 PHPLVSLALVLTSRKCILLIRRVNSSAV 644 PHP V++ + L+S CI L+RR ++S + Sbjct: 526 PHPSVAMWVFLSSESCIHLLRRSSTSCL 443
>LOC_Os06g44540:12006.t04141:unspliced-genomic protein HOTHEAD precursor, putative, expressed| Length = 3692 Score = 31.8 bits (63), Expect = 7.0 Identities = 20/68 (29%), Positives = 29/68 (42%) Frame = -3 / -1 Query: 741 PKISKPSSLGMFLISPVTSLCTLQHLSTR*NKERHSNSHAESAKCIFLKSKPRQEKQGGG 562 P S+ +S M L++ T CT LS + R + HA A R+ GGG Sbjct: 773 PNNSQKNSSDMTLVNLFTRFCTRISLSN*LREHRRHDRHAPRA*TTEGSEMQRKRGGGGG 594 Query: 561 GTSRNVGV 538 G ++ V Sbjct: 593 GRDTDLAV 570
>LOC_Os07g10600:12007.t00934:unspliced-genomic cycloartenol-C-24-methyltransferase 1, putative, expressed| Length = 5826 Score = 25.4 bits (49), Expect(2) = 8.2 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 / +3 Query: 725 LPHSVCFSSHQSPAYVHCS 669 LP S S +SPA++HCS Sbjct: 141 LPSSSSSSRVRSPAHMHCS 197 Score = 23.1 bits (44), Expect(2) = 8.2 Identities = 6/15 (40%), Positives = 13/15 (86%) Frame = -3 / +1 Query: 597 KSKPRQEKQGGGGTS 553 ++ PR+ ++GGGG++ Sbjct: 244 QTHPREREEGGGGSA 288
>LOC_Os05g08800:12005.t00757:unspliced-genomic expressed protein| Length = 2306 Score = 31.3 bits (62), Expect = 9.7 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -3 / -2 Query: 648 KERHSNSHAESAKCIFLKSKPRQEKQGGGGTSRNVGVIHHRH 523 K++ E++ + L+SK R GGG +R + + RH Sbjct: 388 KKKKKEKEKENSSIL*LRSKNRSSSSEGGGATRQIAMDGRRH 263 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 190,466,550 Number of extensions: 2477487 Number of successful extensions: 10918 Number of sequences better than 10.0: 10 Length of query: 292 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 243 Effective length of database: 52,856,264 Effective search space: 12844072152 Effective search space used: 12844072152 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)