ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf8i09 |
|---|---|
| Clone Library Name | barley_pub |
>Q9SJF3:DCP1_ARATH mRNA-decapping enzyme-like protein - Arabidopsis thaliana (Mouse-ear| cress) Length = 367 Score = 298 bits (764), Expect = 3e-80 Identities = 183/372 (49%), Positives = 223/372 (59%), Gaps = 11/372 (2%) Frame = +1 Query: 127 TNGGKLTPNLAMDAEGTRLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVE 306 + GK+ PNL D TRLLNLTVLQR+DP +E+ILITAAHVT Y+FNI+L+QWSRKDVE Sbjct: 2 SQNGKIIPNL--DQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVE 59 Query: 307 GSLFVVKRNTQPRFQFIVMNRRNTDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYN 486 GSLFVVKR+TQPRFQFIVMNRRNTDNLVE+LL DFEYE+Q PYLLYRNA+QEVNGIWFYN Sbjct: 60 GSLFVVKRSTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQGPYLLYRNASQEVNGIWFYN 119 Query: 487 QQDCDAVANLFGRILNAYARVPPKAKVPSTKSEFEELEAVPTSAAIDGPLEPLPASTLIS 666 +++C+ VA LF RIL+AY++V K K S+KSEFEELEA PT A +DGPLEP S+ Sbjct: 120 KRECEEVATLFNRILSAYSKVNQKPKASSSKSEFEELEAKPTMAVMDGPLEP---SSTAR 176 Query: 667 DTPDE-SLANYFXXXXXXXXXXXXXXXXRAHPST--ESTAASHMPLIMP--SAAQSHQIX 831 D PD+ + N+F S H P I P +AA QI Sbjct: 177 DAPDDPAFVNFFSSTMNLGNTASGSASGPYQSSAIPHQPHQPHQPTIAPPVAAAAPPQIQ 236 Query: 832 XXXXXXXXXXXXVQDTN------AHASHSTNLVTXXXXXXXXXXXXXXXXXXXXXXXTAP 993 N ++++ T+LVT TAP Sbjct: 237 SPPPLQSSSPLMTLFDNNPEVISSNSNIHTDLVT-PSFFGPPRMMAQPHLIPGVSMPTAP 295 Query: 994 PLHATSSSAQHPQYGHGTPLLQXXXXXXXXXXXXXXHNNDSLISRDKVKDALLRLVQNDQ 1173 PL+ ++A H Q +GTP+LQ +ISRDKVK+ALL L+Q D+ Sbjct: 296 PLN--PNNASHQQRSYGTPVLQPFPPPTPPPSLAPAPTG-PVISRDKVKEALLSLLQEDE 352 Query: 1174 FIDLIYRELQNA 1209 FID I R LQNA Sbjct: 353 FIDKITRTLQNA 364
>Q5R413:DCP1B_PONPY mRNA-decapping enzyme 1B - Pongo pygmaeus (Orangutan)| Length = 609 Score = 108 bits (269), Expect = 8e-23 Identities = 48/113 (42%), Positives = 72/113 (63%) Frame = +1 Query: 178 RLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNTQPRFQFI 357 R ++L LQR DP + I+ A+ V LY F N+W + DVEG+LFV R+ P+ F Sbjct: 14 RDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFT 73 Query: 358 VMNRRNTDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQQDCDAVANL 516 +MNR + +N E + D +++LQ P+LLYRNA + GIWFY++++C +A L Sbjct: 74 IMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAEL 126
>Q8IZD4:DCP1B_HUMAN mRNA-decapping enzyme 1B - Homo sapiens (Human)| Length = 618 Score = 108 bits (269), Expect = 8e-23 Identities = 48/113 (42%), Positives = 72/113 (63%) Frame = +1 Query: 178 RLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNTQPRFQFI 357 R ++L LQR DP + I+ A+ V LY F N+W + DVEG+LFV R+ P+ F Sbjct: 14 RDISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFT 73 Query: 358 VMNRRNTDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQQDCDAVANL 516 +MNR + +N E + D +++LQ P+LLYRNA + GIWFY++++C +A L Sbjct: 74 IMNRLSMENRTEPITKDLDFQLQDPFLLYRNARLSIYGIWFYDKEECQRIAEL 126
>Q91YD3:DCP1A_MOUSE mRNA-decapping enzyme 1A - Mus musculus (Mouse)| Length = 602 Score = 106 bits (264), Expect = 3e-22 Identities = 50/142 (35%), Positives = 77/142 (54%) Frame = +1 Query: 121 PPTNGGKLTPNLAMDAEGTRLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKD 300 P G L + + + + ++L L++ DP + I V LY F NQW + D Sbjct: 10 PRRRGSALRSKMELLSRAEQEMSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTD 69 Query: 301 VEGSLFVVKRNTQPRFQFIVMNRRNTDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWF 480 +EG+LFV +R+ P F ++NR N NLVE + D E++L P+LLYRNA+ + IWF Sbjct: 70 IEGTLFVYRRSASPYHGFTIVNRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWF 129 Query: 481 YNQQDCDAVANLFGRILNAYAR 546 Y++ DC +A L ++ R Sbjct: 130 YDKNDCHRIAKLMADVVEEETR 151
>Q3SZL6:DCP1B_BOVIN mRNA-decapping enzyme 1B - Bos taurus (Bovine)| Length = 581 Score = 105 bits (261), Expect = 7e-22 Identities = 47/113 (41%), Positives = 71/113 (62%) Frame = +1 Query: 178 RLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNTQPRFQFI 357 R ++L L+R DP + I+ A+ V LY F N+W + DVEG+LFV R+ P+ F Sbjct: 12 RDISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSASPKHGFT 71 Query: 358 VMNRRNTDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQQDCDAVANL 516 +MNR + +N E + D ++ LQ P+LLYRNA + GIWFY++++C +A L Sbjct: 72 IMNRLSMENRTEPITKDLDFLLQDPFLLYRNARLSIYGIWFYDKEECQRIAEL 124
>Q9NPI6:DCP1A_HUMAN mRNA-decapping enzyme 1A - Homo sapiens (Human)| Length = 582 Score = 103 bits (256), Expect = 3e-21 Identities = 47/121 (38%), Positives = 70/121 (57%) Frame = +1 Query: 184 LNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNTQPRFQFIVM 363 ++L L++ DP + I V LY F NQW + D+EG+LFV +R+ P F ++ Sbjct: 11 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFTIV 70 Query: 364 NRRNTDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQQDCDAVANLFGRILNAYA 543 NR N NLVE + D E++L P+LLYRNA+ + IWFY++ DC +A L ++ Sbjct: 71 NRLNMHNLVEPVNKDLEFQLHEPFLLYRNASLSIYSIWFYDKNDCHRIAKLMADVVEEET 130 Query: 544 R 546 R Sbjct: 131 R 131
>Q3U564:DCP1B_MOUSE mRNA-decapping enzyme 1B - Mus musculus (Mouse)| Length = 578 Score = 102 bits (253), Expect = 6e-21 Identities = 44/111 (39%), Positives = 69/111 (62%) Frame = +1 Query: 184 LNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNTQPRFQFIVM 363 ++L L+R DP + I+ A+ V LY F N+W + VEG+LFV R+ P+ F +M Sbjct: 16 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSASPKHGFTIM 75 Query: 364 NRRNTDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQQDCDAVANL 516 NR + +N E + D +++LQ P+LLYRN + GIWFY++++C +A L Sbjct: 76 NRLSMENRTEPITKDLDFQLQNPFLLYRNGTLSIYGIWFYDKEECQRIAKL 126
>Q74Z05:DCP1_ASHGO mRNA-decapping enzyme subunit 1 - Ashbya gossypii (Yeast)| (Eremothecium gossypii) Length = 193 Score = 45.8 bits (107), Expect = 5e-04 Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 50/168 (29%) Frame = +1 Query: 178 RLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNTQPR---- 345 + LN V+ R DP ++ +L H T+Y + N+W++ + +G L + R+ + + Sbjct: 17 KTLNFNVIGRYDPKIKQLLFHTPHATVYKWEAGENKWNKLEYQGVLAIYLRDVREQAELP 76 Query: 346 -------------------------FQFIVMNRRNTDNL--------------------- 387 + IV+NR N +N Sbjct: 77 VPHQEASAGAEGRCGEVLSGRDIYNYALIVLNRINPENFSIAIAPNSVVNKRRLFSPEEN 136 Query: 388 VEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQQDCDAVANLFGRIL 531 V+ L + E++ ++ +N +EV GIW + D + +L +L Sbjct: 137 VQQPLEPMDVEVKDELVIIKNLRKEVYGIWIHTPTDRQNIYDLLKYLL 184
>Q12517:DCP1_YEAST mRNA-decapping enzyme subunit 1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 231 Score = 39.3 bits (90), Expect = 0.046 Identities = 15/68 (22%), Positives = 35/68 (51%) Frame = +1 Query: 178 RLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNTQPRFQFI 357 + LN V+ R DP ++ +L H +LY ++ ++W++ + +G L + R+ + Sbjct: 20 KALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQNTNLL 79 Query: 358 VMNRRNTD 381 ++ + D Sbjct: 80 PVSPQEVD 87
>Q3BNA3:SYR_XANC5 Arginyl-tRNA synthetase - Xanthomonas campestris pv. vesicatoria| (strain 85-10) Length = 562 Score = 32.3 bits (72), Expect = 5.6 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +2 Query: 647 QHPLSFLILLMNHLPITLVVLQALEVYQVGQWLEELIH 760 +H L+ ++ L + + + QALE YQ+ Q+L EL H Sbjct: 477 EHSLAVMLELSRYPEVVEIAGQALEPYQIAQYLRELAH 514
>Q8PFR2:SYR_XANAC Arginyl-tRNA synthetase - Xanthomonas axonopodis pv. citri| Length = 562 Score = 32.3 bits (72), Expect = 5.6 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +2 Query: 647 QHPLSFLILLMNHLPITLVVLQALEVYQVGQWLEELIH 760 +H L+ ++ L + + + QALE YQ+ Q+L EL H Sbjct: 477 EHSLAVMLELSRYPEVVEIAGQALEPYQIAQYLRELAH 514
>Q6E2N3:TRI33_DANRE E3 ubiquitin-protein ligase TRIM33 - Danio rerio (Zebrafish)| (Brachydanio rerio) Length = 1163 Score = 32.0 bits (71), Expect = 7.3 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = +1 Query: 4 PLPLPLPAPNSQAPYSITAACSSPQIHRRPLGD*SMSPPPP--TNGGKLTP 150 P P P P P P TAA +SP + MSPPPP T+ TP Sbjct: 75 PPPPPPPPPPPSTPADSTAAAASPAVLT------EMSPPPPASTSSSSSTP 119
>Q8FXT2:IF2_BRUSU Translation initiation factor IF-2 - Brucella suis| Length = 959 Score = 32.0 bits (71), Expect = 7.3 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 9/64 (14%) Frame = +1 Query: 4 PLPLPLPAPNSQAPYSITAACSSPQ------IHRRPLGD*SMSPPPPTNGGKLTPNLA-- 159 P P P+ AP ++AP + +A + P +H+RP G + P P G + L+ Sbjct: 95 PQPAPVKAPATKAPAAPSAPVTKPHVAQQRPVHQRPGGQQAQRPRPADRSGMVLNTLSRS 154 Query: 160 -MDA 168 MDA Sbjct: 155 EMDA 158
>Q8YEB3:IF2_BRUME Translation initiation factor IF-2 - Brucella melitensis| Length = 959 Score = 32.0 bits (71), Expect = 7.3 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 9/64 (14%) Frame = +1 Query: 4 PLPLPLPAPNSQAPYSITAACSSPQ------IHRRPLGD*SMSPPPPTNGGKLTPNLA-- 159 P P P+ AP ++AP + +A + P +H+RP G + P P G + L+ Sbjct: 95 PQPAPVKAPATKAPAAPSAPVTKPHVAQQRPVHQRPGGQQAQRPRPADRSGMVLNTLSRS 154 Query: 160 -MDA 168 MDA Sbjct: 155 EMDA 158
>Q57AA0:IF2_BRUAB Translation initiation factor IF-2 - Brucella abortus| Length = 959 Score = 32.0 bits (71), Expect = 7.3 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 9/64 (14%) Frame = +1 Query: 4 PLPLPLPAPNSQAPYSITAACSSPQ------IHRRPLGD*SMSPPPPTNGGKLTPNLA-- 159 P P P+ AP ++AP + +A + P +H+RP G + P P G + L+ Sbjct: 95 PQPAPVKAPATKAPAAPSAPVTKPHVAQQRPVHQRPGGQQAQRPRPADRSGMVLNTLSRS 154 Query: 160 -MDA 168 MDA Sbjct: 155 EMDA 158
>Q2YQR7:IF2_BRUA2 Translation initiation factor IF-2 - Brucella abortus (strain 2308)| Length = 959 Score = 32.0 bits (71), Expect = 7.3 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 9/64 (14%) Frame = +1 Query: 4 PLPLPLPAPNSQAPYSITAACSSPQ------IHRRPLGD*SMSPPPPTNGGKLTPNLA-- 159 P P P+ AP ++AP + +A + P +H+RP G + P P G + L+ Sbjct: 95 PQPAPVKAPATKAPAAPSAPVTKPHVAQQRPVHQRPGGQQAQRPRPADRSGMVLNTLSRS 154 Query: 160 -MDA 168 MDA Sbjct: 155 EMDA 158
>P98167:SSPO_BOVIN SCO-spondin precursor - Bos taurus (Bovine)| Length = 5146 Score = 31.6 bits (70), Expect = 9.6 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = +1 Query: 13 LPLPAPNSQAPYSITAACSSPQIHRRPLGD*SMSPPPPTNGGKLTPNLAMDA 168 LP P P + P+S ACS P + + S P P +GG P A +A Sbjct: 3383 LPCPVPGAWCPWSEWTACSQPCQGQTRTRSRACSCPAPQHGGAPCPGEAGEA 3434
>Q0U6X7:HSE1_PHANO Class E vacuolar protein-sorting machinery protein HSE1 -| Phaeosphaeria nodorum (Septoria nodorum) Length = 618 Score = 31.6 bits (70), Expect = 9.6 Identities = 17/43 (39%), Positives = 19/43 (44%) Frame = +1 Query: 10 PLPLPAPNSQAPYSITAACSSPQIHRRPLGD*SMSPPPPTNGG 138 PL P P Q PY SSP H++P D PPP G Sbjct: 528 PLQGPPPGQQNPYE---QISSPPTHQQPPSDPYSQPPPQVGHG 567
>P18484:AP2A2_RAT AP-2 complex subunit alpha-2 - Rattus norvegicus (Rat)| Length = 938 Score = 31.6 bits (70), Expect = 9.6 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 556 KAKVPSTKSEFEELEAVPTSAAIDGPLEPLPASTLISDTPDES 684 K K PST ++ EE + S ++G EP+PAST + TP S Sbjct: 617 KKKGPSTVTDLEETKR-ERSIDVNGGPEPVPASTSAASTPSPS 658
>P17427:AP2A2_MOUSE AP-2 complex subunit alpha-2 - Mus musculus (Mouse)| Length = 938 Score = 31.6 bits (70), Expect = 9.6 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 556 KAKVPSTKSEFEELEAVPTSAAIDGPLEPLPASTLISDTPDES 684 K K PST ++ EE + S ++G EP+PAST + TP S Sbjct: 617 KKKGPSTVTDLEETKR-ERSIDVNGGPEPVPASTSAASTPSPS 658 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 251,713,128 Number of extensions: 5389344 Number of successful extensions: 15126 Number of sequences better than 10.0: 20 Number of HSP's gapped: 15071 Number of HSP's successfully gapped: 21 Length of query: 521 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 403 Effective length of database: 68,319,629 Effective search space: 27532810487 Effective search space used: 27532810487 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
