ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf8i01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT833437.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN128B22, full insert sequence Length = 1107 Score = 771 bits (389), Expect = 0.0 Identities = 623/701 (88%) Strand = Plus / Plus Query: 166 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 225 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 284 Query: 226 atcttcaagcacctcccggatgccaagttcgaaatcattattgtggatgatggaagccct 285 |||||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||| Sbjct: 285 atcttcaagcacctcccggatgtcaactttgaaatcataattgtggatgatggaagccct 344 Query: 286 gatggaactcaagacattgtaaagcagctgcagcaagtatatggtgaagaccgtgttcta 345 ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct: 345 gatggaactcaagacattgtaaagcagttgcagcaagtatatggtgaaaaccgtgttctg 404 Query: 346 ctgcgagctagaccaaggaagctagggcttggcactgcatatatgcatggattgaagcat 405 ||||||||||||| ||||||||||| ||||| ||||||||| | |||||| | |||||| Sbjct: 405 ctgcgagctagactgaggaagctaggacttggtactgcatatttacatggactaaagcat 464 Query: 406 gcttcaggggagttcgttgttataatggatgcggatctatctcatcatccaaagtatttg 465 || || ||||| ||||||||||| |||||||| || |||||||| ||||| ||||| ||| Sbjct: 465 gcctctggggacttcgttgttatcatggatgctgacctatctcaccatccgaagtacttg 524 Query: 466 ccaagtttcatcaggaagcaaaaggaaaccggtgctgacattgtaactggcacgcgttat 525 ||||| ||||| ||||||||||||||||| |||||||| ||||||| ||||| |||||| Sbjct: 525 ccaagcttcattaggaagcaaaaggaaactggtgctgatgttgtaacaggcacccgttat 584 Query: 526 gttagcaatggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagca 585 ||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 585 gttcagaacggtggtgtccatggttggaatctcatgcgcaagttgactagcaggggagca 644 Query: 586 aatgttctggcacaaacgttactacggcccggagcttctgatctgactgggtcgtttagg 645 |||||||| |||||||| ||||||| ||| |||||||||||| ||||||| || || ||| Sbjct: 645 aatgttctagcacaaacattactacagcctggagcttctgatttgactggatcattcagg 704 Query: 646 ctatataagcgaagtgttttggaggatgtcatctcctcctgcgtcagcaagggctatgta 705 |||||||| || | ||| | || ||| | |||||||| || ||||||||||| ||||| Sbjct: 705 ctatataaacggaatgtcctagaagatttaatctcctcatgtgtcagcaagggatatgtt 764 Query: 706 ttccaaatggagatgattgtcagggctactaggaaaggttatcacattgaagaggtccca 765 ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 765 ttccaaatggaaatgattgttagggctaccaggaaaggttatcacattgaagaggttcca 824 Query: 766 atcacttttgtcgacagggtcttcggaatctcaaagcttggtggatctgaaattgttgga 825 || ||||||||||| ||||| || |||| ||||| |||||||||||||| || |||| Sbjct: 825 ataacttttgtcgatagggtttttggaacttcaaaacttggtggatctgagatagttgag 884 Query: 826 tacttgaaaggccttgtgtatctgttgctcacaacataggg 866 || ||||||||||||| |||||| ||||||| |||||||| Sbjct: 885 tatctgaaaggccttgtttatctgctgctcactacataggg 925
>ref|NM_001058286.1| Oryza sativa (japonica cultivar-group) Os03g0824400 (Os03g0824400) mRNA, complete cds Length = 1127 Score = 763 bits (385), Expect = 0.0 Identities = 622/701 (88%) Strand = Plus / Plus Query: 166 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 271 Query: 226 atcttcaagcacctcccggatgccaagttcgaaatcattattgtggatgatggaagccct 285 |||||||||||||| ||||||| ||| || |||||||| |||||||||||||||||||| Sbjct: 272 atcttcaagcacctgccggatgtcaactttgaaatcatagttgtggatgatggaagccct 331 Query: 286 gatggaactcaagacattgtaaagcagctgcagcaagtatatggtgaagaccgtgttcta 345 ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct: 332 gatggaactcaagacattgtaaagcagttgcagcaaatatatggtgaaaaccgtgttctg 391 Query: 346 ctgcgagctagaccaaggaagctagggcttggcactgcatatatgcatggattgaagcat 405 |||||||||||||| ||||||||||| ||||| ||||||||| | |||||| | |||||| Sbjct: 392 ctgcgagctagaccgaggaagctaggacttggtactgcatatttacatggactaaagcat 451 Query: 406 gcttcaggggagttcgttgttataatggatgcggatctatctcatcatccaaagtatttg 465 || || ||||| ||||||||||| |||||||| || |||||||| ||||| ||||| ||| Sbjct: 452 gcctctggggacttcgttgttatcatggatgctgacctatctcaccatccgaagtacttg 511 Query: 466 ccaagtttcatcaggaagcaaaaggaaaccggtgctgacattgtaactggcacgcgttat 525 ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| |||||| Sbjct: 512 ccaagcttcattaggaagcaaaaggaaactggtgctgatgttgtaactggcacccgttat 571 Query: 526 gttagcaatggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagca 585 ||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 572 gttcagaacggtggtgtccatggttggaatctcatgcgcaagttgactagcaggggagca 631 Query: 586 aatgttctggcacaaacgttactacggcccggagcttctgatctgactgggtcgtttagg 645 |||||||| |||||||| ||||||| ||| |||||||||||| ||||||| || || ||| Sbjct: 632 aatgttctagcacaaacattactacagcctggagcttctgatttgactggatcattcagg 691 Query: 646 ctatataagcgaagtgttttggaggatgtcatctcctcctgcgtcagcaagggctatgta 705 |||||||| || | ||| | || ||| | |||||||| || ||||||||||| ||||| Sbjct: 692 ctatataaacggaatgtcctagaagatttaatctcctcgtgtgtcagcaagggatatgtt 751 Query: 706 ttccaaatggagatgattgtcagggctactaggaaaggttatcacattgaagaggtccca 765 ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 752 ttccaaatggaaatgattgttagggctaccaggaaaggttatcacattgaagaggttcca 811 Query: 766 atcacttttgtcgacagggtcttcggaatctcaaagcttggtggatctgaaattgttgga 825 || ||||||||||| ||||| || |||| ||||| |||||||||||||| || |||| Sbjct: 812 ataacttttgtcgatagggtttttggaacttcaaaacttggtggatctgagatagttgag 871 Query: 826 tacttgaaaggccttgtgtatctgttgctcacaacataggg 866 || ||||||||||||| |||||| ||||||| |||||||| Sbjct: 872 tatctgaaaggccttgtttatctgctgctcactacataggg 912
>dbj|AK104298.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-D10, full insert sequence Length = 1127 Score = 763 bits (385), Expect = 0.0 Identities = 622/701 (88%) Strand = Plus / Plus Query: 166 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 271 Query: 226 atcttcaagcacctcccggatgccaagttcgaaatcattattgtggatgatggaagccct 285 |||||||||||||| ||||||| ||| || |||||||| |||||||||||||||||||| Sbjct: 272 atcttcaagcacctgccggatgtcaactttgaaatcatagttgtggatgatggaagccct 331 Query: 286 gatggaactcaagacattgtaaagcagctgcagcaagtatatggtgaagaccgtgttcta 345 ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct: 332 gatggaactcaagacattgtaaagcagttgcagcaaatatatggtgaaaaccgtgttctg 391 Query: 346 ctgcgagctagaccaaggaagctagggcttggcactgcatatatgcatggattgaagcat 405 |||||||||||||| ||||||||||| ||||| ||||||||| | |||||| | |||||| Sbjct: 392 ctgcgagctagaccgaggaagctaggacttggtactgcatatttacatggactaaagcat 451 Query: 406 gcttcaggggagttcgttgttataatggatgcggatctatctcatcatccaaagtatttg 465 || || ||||| ||||||||||| |||||||| || |||||||| ||||| ||||| ||| Sbjct: 452 gcctctggggacttcgttgttatcatggatgctgacctatctcaccatccgaagtacttg 511 Query: 466 ccaagtttcatcaggaagcaaaaggaaaccggtgctgacattgtaactggcacgcgttat 525 ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| |||||| Sbjct: 512 ccaagcttcattaggaagcaaaaggaaactggtgctgatgttgtaactggcacccgttat 571 Query: 526 gttagcaatggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagca 585 ||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 572 gttcagaacggtggtgtccatggttggaatctcatgcgcaagttgactagcaggggagca 631 Query: 586 aatgttctggcacaaacgttactacggcccggagcttctgatctgactgggtcgtttagg 645 |||||||| |||||||| ||||||| ||| |||||||||||| ||||||| || || ||| Sbjct: 632 aatgttctagcacaaacattactacagcctggagcttctgatttgactggatcattcagg 691 Query: 646 ctatataagcgaagtgttttggaggatgtcatctcctcctgcgtcagcaagggctatgta 705 |||||||| || | ||| | || ||| | |||||||| || ||||||||||| ||||| Sbjct: 692 ctatataaacggaatgtcctagaagatttaatctcctcgtgtgtcagcaagggatatgtt 751 Query: 706 ttccaaatggagatgattgtcagggctactaggaaaggttatcacattgaagaggtccca 765 ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 752 ttccaaatggaaatgattgttagggctaccaggaaaggttatcacattgaagaggttcca 811 Query: 766 atcacttttgtcgacagggtcttcggaatctcaaagcttggtggatctgaaattgttgga 825 || ||||||||||| ||||| || |||| ||||| |||||||||||||| || |||| Sbjct: 812 ataacttttgtcgatagggtttttggaacttcaaaacttggtggatctgagatagttgag 871 Query: 826 tacttgaaaggccttgtgtatctgttgctcacaacataggg 866 || ||||||||||||| |||||| ||||||| |||||||| Sbjct: 872 tatctgaaaggccttgtttatctgctgctcactacataggg 912
>dbj|AK070153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044M23, full insert sequence Length = 1128 Score = 755 bits (381), Expect = 0.0 Identities = 621/701 (88%) Strand = Plus / Plus Query: 166 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 272 Query: 226 atcttcaagcacctcccggatgccaagttcgaaatcattattgtggatgatggaagccct 285 |||||||||||||| ||||||| ||| || |||||||| |||||||||||||||||||| Sbjct: 273 atcttcaagcacctgccggatgtcaactttgaaatcatagttgtggatgatggaagccct 332 Query: 286 gatggaactcaagacattgtaaagcagctgcagcaagtatatggtgaagaccgtgttcta 345 ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct: 333 gatggaactcaagacattgtaaagcagttgcagcaaatatatggtgaaaaccgtgttctg 392 Query: 346 ctgcgagctagaccaaggaagctagggcttggcactgcatatatgcatggattgaagcat 405 |||||||||||||| ||||||||||| ||||| ||||||||| | |||||| | |||||| Sbjct: 393 ctgcgagctagaccgaggaagctaggacttggtactgcatatttacatggactaaagcat 452 Query: 406 gcttcaggggagttcgttgttataatggatgcggatctatctcatcatccaaagtatttg 465 || || ||||| ||||||||||| |||||||| || |||||||| ||||| ||||| ||| Sbjct: 453 gcctctggggacttcgttgttatcatggatgctgacctatctcaccatccgaagtacttg 512 Query: 466 ccaagtttcatcaggaagcaaaaggaaaccggtgctgacattgtaactggcacgcgttat 525 ||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| |||||| Sbjct: 513 ccaagcttcattaggaagcaaaaggaaactggtgctgatgttgtaactggcacccgttat 572 Query: 526 gttagcaatggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagca 585 ||| || ||| ||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 573 gttcagaacggtcgtgtccatggttggaatctcatgcgcaagttgactagcaggggagca 632 Query: 586 aatgttctggcacaaacgttactacggcccggagcttctgatctgactgggtcgtttagg 645 |||||||| |||||||| ||||||| ||| |||||||||||| ||||||| || || ||| Sbjct: 633 aatgttctagcacaaacattactacagcctggagcttctgatttgactggatcattcagg 692 Query: 646 ctatataagcgaagtgttttggaggatgtcatctcctcctgcgtcagcaagggctatgta 705 |||||||| || | ||| | || ||| | |||||||| || ||||||||||| ||||| Sbjct: 693 ctatataaacggaatgtcctagaagatttaatctcctcgtgtgtcagcaagggatatgtt 752 Query: 706 ttccaaatggagatgattgtcagggctactaggaaaggttatcacattgaagaggtccca 765 ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| Sbjct: 753 ttccaaatggaaatgattgttagggctaccaggaaaggttatcacattgaagaggttcca 812 Query: 766 atcacttttgtcgacagggtcttcggaatctcaaagcttggtggatctgaaattgttgga 825 || ||||||||||| ||||| || |||| ||||| |||||||||||||| || |||| Sbjct: 813 ataacttttgtcgatagggtttttggaacttcaaaacttggtggatctgagatagttgag 872 Query: 826 tacttgaaaggccttgtgtatctgttgctcacaacataggg 866 || ||||||||||||| |||||| ||||||| |||||||| Sbjct: 873 tatctgaaaggccttgtttatctgctgctcactacataggg 913
>gb|AY110387.1| Zea mays CL40696_1 mRNA sequence Length = 774 Score = 521 bits (263), Expect = e-144 Identities = 551/643 (85%), Gaps = 3/643 (0%) Strand = Plus / Minus Query: 223 ctcatcttcaagcacctcccggatgccaagttcgaaatcattattgtggatgatggaagc 282 ||||||||||||||||||||||||| || || || |||||||||||||||||||| || Sbjct: 762 ctcatcttcaagcacctcccggatgtgaactttgagatcattattgtggatgatggtagt 703 Query: 283 cctgatggaactcaagacattgtaaagcagctgcagcaagtatatggtgaagaccgtgtt 342 || ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 702 ccagatggaactcaggacattgtaaaacagctgcagcaagtatatggtgaagattttgtt 643 Query: 343 ctactgcgagctagaccaaggaagctagggcttggcactgcatatatgcatggattgaag 402 ||||||||||||| |||||||||||||||||||| || |||||| | |||||| | ||| Sbjct: 642 ttactgcgagctaggccaaggaagctagggcttggtaccgcatatttacatggactaaag 583 Query: 403 c-atg-cttcagg-ggagttcgttgttataatggatgcggatctatctcatcatccaaag 459 | ||| | ||||| ||| || || |||| ||||| ||||| |||||||| |||||||| Sbjct: 582 ctatgtcctcaggnggaatttgtcattatcatggacgcggacctatctcaccatccaaaa 523 Query: 460 tatttgccaagtttcatcaggaagcaaaaggaaaccggtgctgacattgtaactggcacg 519 || |||||||| || || ||||||||||||||||| || |||||||||||||||||||| Sbjct: 522 tacttgccaagctttattaggaagcaaaaggaaactggagctgacattgtaactggcaca 463 Query: 520 cgttatgttagcaatggtggtgtccatggttggaatcttatgcggaagttgactagcagg 579 |||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct: 462 cgttatgttaagaatggtggtgtccatggttggaatctcatgcgcaagctgactagcaga 403 Query: 580 ggagcaaatgttctggcacaaacgttactacggcccggagcttctgatctgactgggtcg 639 || ||||||||||| |||||||||||||| | ||| |||||||| ||| | || || || Sbjct: 402 ggtgcaaatgttcttgcacaaacgttactgcagcctggagcttcagatttaaccggatca 343 Query: 640 tttaggctatataagcgaagtgttttggaggatgtcatctcctcctgcgtcagcaagggc 699 |||||||||||||||||| ||| |||| || | |||||||| || |||||||||||| Sbjct: 342 tttaggctatataagcgagatgtcctggaagacttaatctcctcatgtgtcagcaagggc 283 Query: 700 tatgtattccaaatggagatgattgtcagggctactaggaaaggttatcacattgaagag 759 || || ||||| |||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 282 tacgtgttccagatggagatgattgttagggctacaaggaaaggttatcacattgaagag 223 Query: 760 gtcccaatcacttttgtcgacagggtcttcggaatctcaaagcttggtggatctgaaatt 819 || ||||| || ||||| ||||| || || ||||| ||||| ||||| || || || || Sbjct: 222 gttccaataacgtttgtggacagagtatttggaatttcaaaacttggcgggtccgagata 163 Query: 820 gttggatacttgaaaggccttgtgtatctgttgctcacaacat 862 |||| ||| |||||||||||||| ||||| |||||||||||| Sbjct: 162 gttgaatatttgaaaggccttgtttatcttctgctcacaacat 120
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 196 bits (99), Expect = 1e-46 Identities = 144/159 (90%) Strand = Plus / Plus Query: 477 caggaagcaaaaggaaaccggtgctgacattgtaactggcacgcgttatgttagcaatgg 536 |||||||||||||||||| |||||||| ||||||||||||| ||||||||| || || Sbjct: 34419057 caggaagcaaaaggaaactggtgctgatgttgtaactggcacccgttatgttcagaacgg 34419116 Query: 537 tggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgttctggc 596 ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || Sbjct: 34419117 tggtgtccatggttggaatctcatgcgcaagttgactagcaggggagcaaatgttctagc 34419176 Query: 597 acaaacgttactacggcccggagcttctgatctgactgg 635 |||||| ||||||| ||| |||||||||||| ||||||| Sbjct: 34419177 acaaacattactacagcctggagcttctgatttgactgg 34419215 Score = 147 bits (74), Expect = 9e-32 Identities = 74/74 (100%) Strand = Plus / Plus Query: 166 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 34417573 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 34417632 Query: 226 atcttcaagcacct 239 |||||||||||||| Sbjct: 34417633 atcttcaagcacct 34417646 Score = 135 bits (68), Expect = 4e-28 Identities = 92/100 (92%) Strand = Plus / Plus Query: 243 ggatgccaagttcgaaatcattattgtggatgatggaagccctgatggaactcaagacat 302 ||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 34418239 ggatgtcaactttgaaatcatagttgtggatgatggaagccctgatggaactcaagacat 34418298 Query: 303 tgtaaagcagctgcagcaagtatatggtgaagaccgtgtt 342 |||||||||| |||||||| ||||||||||| |||||||| Sbjct: 34418299 tgtaaagcagttgcagcaaatatatggtgaaaaccgtgtt 34418338 Score = 115 bits (58), Expect = 3e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 676 atctcctcctgcgtcagcaagggctatgtattccaaatggagatgattgtcagggctact 735 |||||||| || ||||||||||| ||||| ||||||||||| |||||||| |||||||| Sbjct: 34419337 atctcctcgtgtgtcagcaagggatatgttttccaaatggaaatgattgttagggctacc 34419396 Query: 736 aggaaaggttatcacattgaagaggt 761 |||||||||||||||||||||||||| Sbjct: 34419397 aggaaaggttatcacattgaagaggt 34419422 Score = 81.8 bits (41), Expect = 5e-12 Identities = 92/109 (84%) Strand = Plus / Plus Query: 758 aggtcccaatcacttttgtcgacagggtcttcggaatctcaaagcttggtggatctgaaa 817 |||| ||||| ||||||||||| ||||| || |||| ||||| |||||||||||||| | Sbjct: 34419544 aggttccaataacttttgtcgatagggtttttggaacttcaaaacttggtggatctgaga 34419603 Query: 818 ttgttggatacttgaaaggccttgtgtatctgttgctcacaacataggg 866 | |||| || ||||||||||||| |||||| ||||||| |||||||| Sbjct: 34419604 tagttgagtatctgaaaggccttgtttatctgctgctcactacataggg 34419652 Score = 61.9 bits (31), Expect = 4e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 379 actgcatatatgcatggattgaagcatgcttcaggggagttcgttgttataatggatgcg 438 ||||||||| | |||||| | |||||||| || ||||| ||||||||||| |||||||| Sbjct: 34418561 actgcatatttacatggactaaagcatgcctctggggacttcgttgttatcatggatgct 34418620 Query: 439 gatctatctca 449 || |||||||| Sbjct: 34418621 gacctatctca 34418631 Score = 48.1 bits (24), Expect = 0.064 Identities = 30/32 (93%) Strand = Plus / Plus Query: 346 ctgcgagctagaccaaggaagctagggcttgg 377 |||||||||||||| ||||||||||| ||||| Sbjct: 34418448 ctgcgagctagaccgaggaagctaggacttgg 34418479
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 196 bits (99), Expect = 1e-46 Identities = 144/159 (90%) Strand = Plus / Minus Query: 477 caggaagcaaaaggaaaccggtgctgacattgtaactggcacgcgttatgttagcaatgg 536 |||||||||||||||||| |||||||| ||||||||||||| ||||||||| || || Sbjct: 6413 caggaagcaaaaggaaactggtgctgatgttgtaactggcacccgttatgttcagaacgg 6354 Query: 537 tggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgttctggc 596 ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || Sbjct: 6353 tggtgtccatggttggaatctcatgcgcaagttgactagcaggggagcaaatgttctagc 6294 Query: 597 acaaacgttactacggcccggagcttctgatctgactgg 635 |||||| ||||||| ||| |||||||||||| ||||||| Sbjct: 6293 acaaacattactacagcctggagcttctgatttgactgg 6255 Score = 147 bits (74), Expect = 9e-32 Identities = 74/74 (100%) Strand = Plus / Minus Query: 166 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7897 tacagcatcatcgtgcccacctacaacgagcgcctcaacgtcgccctcatcgtctacctc 7838 Query: 226 atcttcaagcacct 239 |||||||||||||| Sbjct: 7837 atcttcaagcacct 7824 Score = 135 bits (68), Expect = 4e-28 Identities = 92/100 (92%) Strand = Plus / Minus Query: 243 ggatgccaagttcgaaatcattattgtggatgatggaagccctgatggaactcaagacat 302 ||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 7231 ggatgtcaactttgaaatcatagttgtggatgatggaagccctgatggaactcaagacat 7172 Query: 303 tgtaaagcagctgcagcaagtatatggtgaagaccgtgtt 342 |||||||||| |||||||| ||||||||||| |||||||| Sbjct: 7171 tgtaaagcagttgcagcaaatatatggtgaaaaccgtgtt 7132 Score = 115 bits (58), Expect = 3e-22 Identities = 79/86 (91%) Strand = Plus / Minus Query: 676 atctcctcctgcgtcagcaagggctatgtattccaaatggagatgattgtcagggctact 735 |||||||| || ||||||||||| ||||| ||||||||||| |||||||| |||||||| Sbjct: 6133 atctcctcgtgtgtcagcaagggatatgttttccaaatggaaatgattgttagggctacc 6074 Query: 736 aggaaaggttatcacattgaagaggt 761 |||||||||||||||||||||||||| Sbjct: 6073 aggaaaggttatcacattgaagaggt 6048 Score = 81.8 bits (41), Expect = 5e-12 Identities = 92/109 (84%) Strand = Plus / Minus Query: 758 aggtcccaatcacttttgtcgacagggtcttcggaatctcaaagcttggtggatctgaaa 817 |||| ||||| ||||||||||| ||||| || |||| ||||| |||||||||||||| | Sbjct: 5926 aggttccaataacttttgtcgatagggtttttggaacttcaaaacttggtggatctgaga 5867 Query: 818 ttgttggatacttgaaaggccttgtgtatctgttgctcacaacataggg 866 | |||| || ||||||||||||| |||||| ||||||| |||||||| Sbjct: 5866 tagttgagtatctgaaaggccttgtttatctgctgctcactacataggg 5818 Score = 61.9 bits (31), Expect = 4e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 379 actgcatatatgcatggattgaagcatgcttcaggggagttcgttgttataatggatgcg 438 ||||||||| | |||||| | |||||||| || ||||| ||||||||||| |||||||| Sbjct: 6909 actgcatatttacatggactaaagcatgcctctggggacttcgttgttatcatggatgct 6850 Query: 439 gatctatctca 449 || |||||||| Sbjct: 6849 gacctatctca 6839 Score = 48.1 bits (24), Expect = 0.064 Identities = 30/32 (93%) Strand = Plus / Minus Query: 346 ctgcgagctagaccaaggaagctagggcttgg 377 |||||||||||||| ||||||||||| ||||| Sbjct: 7022 ctgcgagctagaccgaggaagctaggacttgg 6991
>dbj|AK227450.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-09-E04 Length = 976 Score = 141 bits (71), Expect = 6e-30 Identities = 239/295 (81%) Strand = Plus / Plus Query: 184 acctacaacgagcgcctcaacgtcgccctcatcgtctacctcatcttcaagcacctcccg 243 ||||||||||||||||||||| |||| |||| |||||||| || |||||||| |||| | Sbjct: 101 acctacaacgagcgcctcaacatcgctatcatagtctacctgattttcaagcatctccgg 160 Query: 244 gatgccaagttcgaaatcattattgtggatgatggaagccctgatggaactcaagacatt 303 || | | || || || ||| ||||||||||||| || |||||||| || || || ||| Sbjct: 161 gacgttgattttgagataattgttgtggatgatgggagtcctgatggcacacaggaaatt 220 Query: 304 gtaaagcagctgcagcaagtatatggtgaagaccgtgttctactgcgagctagaccaagg 363 || ||||| ||||||||| | ||||||||||||||| | || | |||||||| | | | Sbjct: 221 gtcaagcaactgcagcaattgtatggtgaagaccgtatccttttaagagctagagccaag 280 Query: 364 aagctagggcttggcactgcatatatgcatggattgaagcatgcttcaggggagttcgtt 423 ||||| || | || ||||||||||| ||||| |||||||||||| | || || ||||| Sbjct: 281 aagcttggtttgggaactgcatatattcatggtttgaagcatgctacgggtgatttcgtc 340 Query: 424 gttataatggatgcggatctatctcatcatccaaagtatttgccaagtttcatca 478 || || |||||||| ||||| || ||||||||||| || || ||||||||||||| Sbjct: 341 gtgatcatggatgctgatctttcacatcatccaaaatacttaccaagtttcatca 395 Score = 50.1 bits (25), Expect = 0.016 Identities = 49/57 (85%) Strand = Plus / Plus Query: 534 tggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgt 590 ||||||||| || || ||||||||||||||||| | ||||| || ||||||||||| Sbjct: 451 tggtggtgtacacgggtggaatcttatgcggaaactcactagtagaggagcaaatgt 507 Score = 48.1 bits (24), Expect = 0.064 Identities = 57/68 (83%) Strand = Plus / Plus Query: 751 attgaagaggtcccaatcacttttgtcgacagggtcttcggaatctcaaagcttggtgga 810 ||||||||||| || ||||||||||| ||||| ||||| |||| || || || || ||| Sbjct: 668 attgaagaggtaccgatcacttttgttgacagagtctttggaacttcgaaactcggagga 727 Query: 811 tctgaaat 818 |||||||| Sbjct: 728 tctgaaat 735
>ref|NM_101908.2| Arabidopsis thaliana dolichyl-phosphate beta-D-mannosyltransferase/ eukaryotic elongation factor-2 kinase (AT1G20575) mRNA, complete cds Length = 1001 Score = 141 bits (71), Expect = 6e-30 Identities = 239/295 (81%) Strand = Plus / Plus Query: 184 acctacaacgagcgcctcaacgtcgccctcatcgtctacctcatcttcaagcacctcccg 243 ||||||||||||||||||||| |||| |||| |||||||| || |||||||| |||| | Sbjct: 129 acctacaacgagcgcctcaacatcgctatcatagtctacctgattttcaagcatctccgg 188 Query: 244 gatgccaagttcgaaatcattattgtggatgatggaagccctgatggaactcaagacatt 303 || | | || || || ||| ||||||||||||| || |||||||| || || || ||| Sbjct: 189 gacgttgattttgagataattgttgtggatgatgggagtcctgatggcacacaggaaatt 248 Query: 304 gtaaagcagctgcagcaagtatatggtgaagaccgtgttctactgcgagctagaccaagg 363 || ||||| ||||||||| | ||||||||||||||| | || | |||||||| | | | Sbjct: 249 gtcaagcaactgcagcaattgtatggtgaagaccgtatccttttaagagctagagccaag 308 Query: 364 aagctagggcttggcactgcatatatgcatggattgaagcatgcttcaggggagttcgtt 423 ||||| || | || ||||||||||| ||||| |||||||||||| | || || ||||| Sbjct: 309 aagcttggtttgggaactgcatatattcatggtttgaagcatgctacgggtgatttcgtc 368 Query: 424 gttataatggatgcggatctatctcatcatccaaagtatttgccaagtttcatca 478 || || |||||||| ||||| || ||||||||||| || || ||||||||||||| Sbjct: 369 gtgatcatggatgctgatctttcacatcatccaaaatacttaccaagtttcatca 423 Score = 50.1 bits (25), Expect = 0.016 Identities = 49/57 (85%) Strand = Plus / Plus Query: 534 tggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgt 590 ||||||||| || || ||||||||||||||||| | ||||| || ||||||||||| Sbjct: 479 tggtggtgtacacgggtggaatcttatgcggaaactcactagtagaggagcaaatgt 535 Score = 48.1 bits (24), Expect = 0.064 Identities = 57/68 (83%) Strand = Plus / Plus Query: 751 attgaagaggtcccaatcacttttgtcgacagggtcttcggaatctcaaagcttggtgga 810 ||||||||||| || ||||||||||| ||||| ||||| |||| || || || || ||| Sbjct: 696 attgaagaggtaccgatcacttttgttgacagagtctttggaacttcgaaactcggagga 755 Query: 811 tctgaaat 818 |||||||| Sbjct: 756 tctgaaat 763
>gb|BT005875.1| Arabidopsis thaliana At1g20575 gene, complete cds Length = 741 Score = 141 bits (71), Expect = 6e-30 Identities = 239/295 (81%) Strand = Plus / Plus Query: 184 acctacaacgagcgcctcaacgtcgccctcatcgtctacctcatcttcaagcacctcccg 243 ||||||||||||||||||||| |||| |||| |||||||| || |||||||| |||| | Sbjct: 61 acctacaacgagcgcctcaacatcgctatcatagtctacctgattttcaagcatctccgg 120 Query: 244 gatgccaagttcgaaatcattattgtggatgatggaagccctgatggaactcaagacatt 303 || | | || || || ||| ||||||||||||| || |||||||| || || || ||| Sbjct: 121 gacgttgattttgagataattgttgtggatgatgggagtcctgatggcacacaggaaatt 180 Query: 304 gtaaagcagctgcagcaagtatatggtgaagaccgtgttctactgcgagctagaccaagg 363 || ||||| ||||||||| | ||||||||||||||| | || | |||||||| | | | Sbjct: 181 gtcaagcaactgcagcaattgtatggtgaagaccgtatccttttaagagctagagccaag 240 Query: 364 aagctagggcttggcactgcatatatgcatggattgaagcatgcttcaggggagttcgtt 423 ||||| || | || ||||||||||| ||||| |||||||||||| | || || ||||| Sbjct: 241 aagcttggtttgggaactgcatatattcatggtttgaagcatgctacgggtgatttcgtc 300 Query: 424 gttataatggatgcggatctatctcatcatccaaagtatttgccaagtttcatca 478 || || |||||||| ||||| || ||||||||||| || || ||||||||||||| Sbjct: 301 gtgatcatggatgctgatctttcacatcatccaaaatacttaccaagtttcatca 355 Score = 50.1 bits (25), Expect = 0.016 Identities = 49/57 (85%) Strand = Plus / Plus Query: 534 tggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgt 590 ||||||||| || || ||||||||||||||||| | ||||| || ||||||||||| Sbjct: 411 tggtggtgtacacgggtggaatcttatgcggaaactcactagtagaggagcaaatgt 467 Score = 48.1 bits (24), Expect = 0.064 Identities = 57/68 (83%) Strand = Plus / Plus Query: 751 attgaagaggtcccaatcacttttgtcgacagggtcttcggaatctcaaagcttggtgga 810 ||||||||||| || ||||||||||| ||||| ||||| |||| || || || || ||| Sbjct: 628 attgaagaggtaccgatcacttttgttgacagagtctttggaacttcgaaactcggagga 687 Query: 811 tctgaaat 818 |||||||| Sbjct: 688 tctgaaat 695
>dbj|AK175559.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-98-E21 Length = 1034 Score = 141 bits (71), Expect = 6e-30 Identities = 239/295 (81%) Strand = Plus / Plus Query: 184 acctacaacgagcgcctcaacgtcgccctcatcgtctacctcatcttcaagcacctcccg 243 ||||||||||||||||||||| |||| |||| |||||||| || |||||||| |||| | Sbjct: 129 acctacaacgagcgcctcaacatcgctatcatagtctacctgattttcaagcatctccgg 188 Query: 244 gatgccaagttcgaaatcattattgtggatgatggaagccctgatggaactcaagacatt 303 || | | || || || ||| ||||||||||||| || |||||||| || || || ||| Sbjct: 189 gacgttgattttgagataattgttgtggatgatgggagtcctgatggcacacaggaaatt 248 Query: 304 gtaaagcagctgcagcaagtatatggtgaagaccgtgttctactgcgagctagaccaagg 363 || ||||| ||||||||| | ||||||||||||||| | || | |||||||| | | | Sbjct: 249 gtcaagcaactgcagcaattgtatggtgaagaccgtatccttttaagagctagagccaag 308 Query: 364 aagctagggcttggcactgcatatatgcatggattgaagcatgcttcaggggagttcgtt 423 ||||| || | || ||||||||||| ||||| |||||||||||| | || || ||||| Sbjct: 309 aagcttggtttgggaactgcatatattcatggtttgaagcatgctacgggtgatttcgtc 368 Query: 424 gttataatggatgcggatctatctcatcatccaaagtatttgccaagtttcatca 478 || || |||||||| ||||| || ||||||||||| || || ||||||||||||| Sbjct: 369 gtgatcatggatgctgatctttcacatcatccaaaatacttaccaagtttcatca 423 Score = 50.1 bits (25), Expect = 0.016 Identities = 49/57 (85%) Strand = Plus / Plus Query: 534 tggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgt 590 ||||||||| || || ||||||||||||||||| | ||||| || ||||||||||| Sbjct: 479 tggtggtgtacacgggtggaatcttatgcggaaactcactagtagaggagcaaatgt 535 Score = 48.1 bits (24), Expect = 0.064 Identities = 57/68 (83%) Strand = Plus / Plus Query: 751 attgaagaggtcccaatcacttttgtcgacagggtcttcggaatctcaaagcttggtgga 810 ||||||||||| || ||||||||||| ||||| ||||| |||| || || || || ||| Sbjct: 696 attgaagaggtaccgatcacttttgttgacagagtctttggaacttcgaaactcggagga 755 Query: 811 tctgaaat 818 |||||||| Sbjct: 756 tctgaaat 763
>emb|BX818531.1|CNS0AEED Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZB03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 980 Score = 141 bits (71), Expect = 6e-30 Identities = 239/295 (81%) Strand = Plus / Plus Query: 184 acctacaacgagcgcctcaacgtcgccctcatcgtctacctcatcttcaagcacctcccg 243 ||||||||||||||||||||| |||| |||| |||||||| || |||||||| |||| | Sbjct: 107 acctacaacgagcgcctcaacatcgctatcatagtctacctgattttcaagcatctccgg 166 Query: 244 gatgccaagttcgaaatcattattgtggatgatggaagccctgatggaactcaagacatt 303 || | | || || || ||| ||||||||||||| || |||||||| || || || ||| Sbjct: 167 gacgttgattttgagataattgttgtggatgatgggagtcctgatggcacacaggaaatt 226 Query: 304 gtaaagcagctgcagcaagtatatggtgaagaccgtgttctactgcgagctagaccaagg 363 || ||||| ||||||||| | ||||||||||||||| | || | |||||||| | | | Sbjct: 227 gtcaagcaactgcagcaattgtatggtgaagaccgtatccttttaagagctagagccaag 286 Query: 364 aagctagggcttggcactgcatatatgcatggattgaagcatgcttcaggggagttcgtt 423 ||||| || | || ||||||||||| ||||| |||||||||||| | || || ||||| Sbjct: 287 aagcttggtttgggaactgcatatattcatggtttgaagcatgctacgggtgatttcgtc 346 Query: 424 gttataatggatgcggatctatctcatcatccaaagtatttgccaagtttcatca 478 || || |||||||| ||||| || ||||||||||| || || ||||||||||||| Sbjct: 347 gtgatcatggatgctgatctttcacatcatccaaaatacttaccaagtttcatca 401 Score = 50.1 bits (25), Expect = 0.016 Identities = 49/57 (85%) Strand = Plus / Plus Query: 534 tggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgt 590 ||||||||| || || ||||||||||||||||| | ||||| || ||||||||||| Sbjct: 457 tggtggtgtacacgggtggaatcttatgcggaaactcactagtagaggagcaaatgt 513 Score = 48.1 bits (24), Expect = 0.064 Identities = 57/68 (83%) Strand = Plus / Plus Query: 751 attgaagaggtcccaatcacttttgtcgacagggtcttcggaatctcaaagcttggtgga 810 ||||||||||| || ||||||||||| ||||| ||||| |||| || || || || ||| Sbjct: 674 attgaagaggtaccgatcacttttgttgacagagtctttggaacttcgaaactcggagga 733 Query: 811 tctgaaat 818 |||||||| Sbjct: 734 tctgaaat 741
>gb|AY085986.1| Arabidopsis thaliana clone 20443 mRNA, complete sequence Length = 994 Score = 133 bits (67), Expect = 1e-27 Identities = 238/295 (80%) Strand = Plus / Plus Query: 184 acctacaacgagcgcctcaacgtcgccctcatcgtctacctcatcttcaagcacctcccg 243 |||| |||||||||||||||| |||| |||| |||||||| || |||||||| |||| | Sbjct: 129 accttcaacgagcgcctcaacatcgctatcatagtctacctgattttcaagcatctccgg 188 Query: 244 gatgccaagttcgaaatcattattgtggatgatggaagccctgatggaactcaagacatt 303 || | | || || || ||| ||||||||||||| || |||||||| || || || ||| Sbjct: 189 gacgttgattttgagataattgttgtggatgatgggagtcctgatggcacacaggaaatt 248 Query: 304 gtaaagcagctgcagcaagtatatggtgaagaccgtgttctactgcgagctagaccaagg 363 || ||||| ||||||||| | ||||||||||||||| | || | |||||||| | | | Sbjct: 249 gtcaagcaactgcagcaattgtatggtgaagaccgtatccttttaagagctagagccaag 308 Query: 364 aagctagggcttggcactgcatatatgcatggattgaagcatgcttcaggggagttcgtt 423 ||||| || | || ||||||||||| ||||| |||||||||||| | || || ||||| Sbjct: 309 aagcttggtttgggaactgcatatattcatggtttgaagcatgctacgggtgatttcgtc 368 Query: 424 gttataatggatgcggatctatctcatcatccaaagtatttgccaagtttcatca 478 || || |||||||| ||||| || ||||||||||| || || ||||||||||||| Sbjct: 369 gtgatcatggatgctgatctttcacatcatccaaaatacttaccaagtttcatca 423 Score = 50.1 bits (25), Expect = 0.016 Identities = 49/57 (85%) Strand = Plus / Plus Query: 534 tggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgt 590 ||||||||| || || ||||||||||||||||| | ||||| || ||||||||||| Sbjct: 479 tggtggtgtacacgggtggaatcttatgcggaaactcactagtagaggagcaaatgt 535 Score = 48.1 bits (24), Expect = 0.064 Identities = 57/68 (83%) Strand = Plus / Plus Query: 751 attgaagaggtcccaatcacttttgtcgacagggtcttcggaatctcaaagcttggtgga 810 ||||||||||| || ||||||||||| ||||| ||||| |||| || || || || ||| Sbjct: 696 attgaagaggtaccgatcacttttgttgacagagtctttggaacttcgaaactcggagga 755 Query: 811 tctgaaat 818 |||||||| Sbjct: 756 tctgaaat 763
>emb|CU062498.5| S.lycopersicum DNA sequence from clone LE_HBa-106F7 on chromosome 4, complete sequence Length = 89292 Score = 67.9 bits (34), Expect = 7e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 376 ggcactgcatatatgcatggattgaagcatgcttcaggggagttcgttgttataatggat 435 |||||||| ||||| ||||| ||||||||||| ||||| | || |||||||| |||||| Sbjct: 41902 ggcactgcgtatattcatggtttgaagcatgcctcaggcaattttgttgttattatggat 41843 Query: 436 gcggatctatctca 449 |||||||| ||||| Sbjct: 41842 gcggatctttctca 41829 Score = 60.0 bits (30), Expect = 2e-05 Identities = 57/66 (86%) Strand = Plus / Minus Query: 534 tggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgttct 593 |||||||||||| || ||||| |||||||| || ||||| ||||||||||| ||||| || Sbjct: 41124 tggtggtgtccacggatggaaccttatgcgcaaattgacgagcaggggagccaatgtcct 41065 Query: 594 ggcaca 599 ||||| Sbjct: 41064 tgcaca 41059 Score = 52.0 bits (26), Expect = 0.004 Identities = 44/50 (88%) Strand = Plus / Minus Query: 712 atggagatgattgtcagggctactaggaaaggttatcacattgaagaggt 761 |||||||||||||| |||||| | || |||||||| | |||||||||||| Sbjct: 40514 atggagatgattgttagggcttcaagaaaaggttaccgcattgaagaggt 40465
>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I, complete sequence Length = 143879 Score = 67.9 bits (34), Expect = 7e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 266 ttgtggatgatggaagccctgatggaactcaagacattgtaaagcagctgcagcaagtat 325 ||||||||||||| || |||||||| || || || ||||| ||||| ||||||||| | | Sbjct: 18568 ttgtggatgatgggagtcctgatggcacacaggaaattgtcaagcaactgcagcaattgt 18509 Query: 326 atggtgaagaccgt 339 |||||||||||||| Sbjct: 18508 atggtgaagaccgt 18495 Score = 60.0 bits (30), Expect = 2e-05 Identities = 51/58 (87%) Strand = Plus / Minus Query: 184 acctacaacgagcgcctcaacgtcgccctcatcgtctacctcatcttcaagcacctcc 241 ||||||||||||||||||||| |||| |||| |||||||| || |||||||| |||| Sbjct: 19075 acctacaacgagcgcctcaacatcgctatcatagtctacctgattttcaagcatctcc 19018 Score = 54.0 bits (27), Expect = 0.001 Identities = 63/75 (84%) Strand = Plus / Minus Query: 379 actgcatatatgcatggattgaagcatgcttcaggggagttcgttgttataatggatgcg 438 ||||||||||| ||||| |||||||||||| | || || ||||| || || |||||||| Sbjct: 18280 actgcatatattcatggtttgaagcatgctacgggtgatttcgtcgtgatcatggatgct 18221 Query: 439 gatctatctcatcat 453 ||||| || |||||| Sbjct: 18220 gatctttcacatcat 18206 Score = 50.1 bits (25), Expect = 0.016 Identities = 49/57 (85%) Strand = Plus / Minus Query: 534 tggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgt 590 ||||||||| || || ||||||||||||||||| | ||||| || ||||||||||| Sbjct: 17959 tggtggtgtacacgggtggaatcttatgcggaaactcactagtagaggagcaaatgt 17903
>gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I, complete sequence Length = 99231 Score = 67.9 bits (34), Expect = 7e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 266 ttgtggatgatggaagccctgatggaactcaagacattgtaaagcagctgcagcaagtat 325 ||||||||||||| || |||||||| || || || ||||| ||||| ||||||||| | | Sbjct: 36547 ttgtggatgatgggagtcctgatggcacacaggaaattgtcaagcaactgcagcaattgt 36606 Query: 326 atggtgaagaccgt 339 |||||||||||||| Sbjct: 36607 atggtgaagaccgt 36620 Score = 60.0 bits (30), Expect = 2e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 184 acctacaacgagcgcctcaacgtcgccctcatcgtctacctcatcttcaagcacctcc 241 ||||||||||||||||||||| |||| |||| |||||||| || |||||||| |||| Sbjct: 36040 acctacaacgagcgcctcaacatcgctatcatagtctacctgattttcaagcatctcc 36097 Score = 54.0 bits (27), Expect = 0.001 Identities = 63/75 (84%) Strand = Plus / Plus Query: 379 actgcatatatgcatggattgaagcatgcttcaggggagttcgttgttataatggatgcg 438 ||||||||||| ||||| |||||||||||| | || || ||||| || || |||||||| Sbjct: 36835 actgcatatattcatggtttgaagcatgctacgggtgatttcgtcgtgatcatggatgct 36894 Query: 439 gatctatctcatcat 453 ||||| || |||||| Sbjct: 36895 gatctttcacatcat 36909 Score = 50.1 bits (25), Expect = 0.016 Identities = 49/57 (85%) Strand = Plus / Plus Query: 534 tggtggtgtccatggttggaatcttatgcggaagttgactagcaggggagcaaatgt 590 ||||||||| || || ||||||||||||||||| | ||||| || ||||||||||| Sbjct: 37156 tggtggtgtacacgggtggaatcttatgcggaaactcactagtagaggagcaaatgt 37212
>ref|XM_417511.2| PREDICTED: Gallus gallus dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit (DPM1), mRNA Length = 2744 Score = 52.0 bits (26), Expect = 0.004 Identities = 71/86 (82%) Strand = Plus / Plus Query: 373 cttggcactgcatatatgcatggattgaagcatgcttcaggggagttcgttgttataatg 432 ||||||||||| ||||| |||||| ||||||| || | ||| | || ||||||| ||| Sbjct: 274 cttggcactgcctatattcatggaatgaagcacgccactgggaattttattgttattatg 333 Query: 433 gatgcggatctatctcatcatccaaa 458 ||||| || |||||||| |||||||| Sbjct: 334 gatgctgacctatctcaccatccaaa 359
>emb|CR524367.1| Gallus gallus finished cDNA, clone ChEST124a24 Length = 1656 Score = 52.0 bits (26), Expect = 0.004 Identities = 71/86 (82%) Strand = Plus / Plus Query: 373 cttggcactgcatatatgcatggattgaagcatgcttcaggggagttcgttgttataatg 432 ||||||||||| ||||| |||||| ||||||| || | ||| | || ||||||| ||| Sbjct: 237 cttggcactgcctatattcatggaatgaagcacgccactgggaattttattgttattatg 296 Query: 433 gatgcggatctatctcatcatccaaa 458 ||||| || |||||||| |||||||| Sbjct: 297 gatgctgacctatctcaccatccaaa 322
>ref|NM_001011407.1| Xenopus tropicalis dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit (dpm1), mRNA gb|BC088776.1| Xenopus tropicalis dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit, mRNA (cDNA clone MGC:108155 IMAGE:7006546), complete cds Length = 1032 Score = 50.1 bits (25), Expect = 0.016 Identities = 31/33 (93%) Strand = Plus / Plus Query: 694 aagggctatgtattccaaatggagatgattgtc 726 ||||||||||| ||||| ||||||||||||||| Sbjct: 581 aagggctatgttttccagatggagatgattgtc 613
>gb|AY105074.1| Zea mays PCO087822 mRNA sequence Length = 1219 Score = 48.1 bits (24), Expect = 0.064 Identities = 30/32 (93%) Strand = Plus / Plus Query: 204 cgtcgccctcatcgtctacctcatcttcaagc 235 ||||||||||||| ||||| |||||||||||| Sbjct: 406 cgtcgccctcatcctctacttcatcttcaagc 437
>ref|XM_001179539.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC589166 (LOC589166), mRNA Length = 768 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Plus Query: 694 aagggctatgtattccaaatggagatgattgtcag 728 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 598 aagggttatgtgttccagatggagatgattgtcag 632 Score = 44.1 bits (22), Expect = 1.0 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 ataatggatgcggatctatctcatcatccaaagt 460 ||||||||||| ||||| ||||| |||||||||| Sbjct: 331 ataatggatgctgatctttctcaccatccaaagt 364
>ref|XM_788816.2| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC589166 (LOC589166), mRNA Length = 768 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Plus Query: 694 aagggctatgtattccaaatggagatgattgtcag 728 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 598 aagggttatgtgttccagatggagatgattgtcag 632 Score = 44.1 bits (22), Expect = 1.0 Identities = 31/34 (91%) Strand = Plus / Plus Query: 427 ataatggatgcggatctatctcatcatccaaagt 460 ||||||||||| ||||| ||||| |||||||||| Sbjct: 331 ataatggatgctgatctttctcaccatccaaagt 364
>gb|AC135100.12| Medicago truncatula clone mth2-17j9, complete sequence Length = 113967 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 950 tataaatttgttaacattttcag 972 ||||||||||||||||||||||| Sbjct: 86577 tataaatttgttaacattttcag 86555
>emb|CR318627.19| Zebrafish DNA sequence from clone DKEYP-97F4 in linkage group 23, complete sequence Length = 176131 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Minus Query: 697 ggctatgtattccaaatggagatgattgtcagggc 731 |||||||| ||||| ||||||||||||||| |||| Sbjct: 95674 ggctatgtgttccagatggagatgattgtccgggc 95640
>emb|CR352228.11| Zebrafish DNA sequence from clone CH211-104F13 in linkage group 23, complete sequence Length = 175139 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Minus Query: 697 ggctatgtattccaaatggagatgattgtcagggc 731 |||||||| ||||| ||||||||||||||| |||| Sbjct: 102338 ggctatgtgttccagatggagatgattgtccgggc 102304
>ref|NM_001003596.1| Danio rerio dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit (dpm1), mRNA gb|BC077113.1| Danio rerio dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit, mRNA (cDNA clone MGC:101018 IMAGE:7150656), complete cds Length = 1045 Score = 46.1 bits (23), Expect = 0.25 Identities = 38/43 (88%) Strand = Plus / Plus Query: 418 ttcgttgttataatggatgcggatctatctcatcatccaaagt 460 |||||| | ||||||||||| ||||| || ||||||||||||| Sbjct: 346 ttcgttatcataatggatgcagatctgtcacatcatccaaagt 388 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Plus Query: 697 ggctatgtattccaaatggagatgattgtcagggc 731 |||||||| ||||| ||||||||||||||| |||| Sbjct: 625 ggctatgtgttccagatggagatgattgtccgggc 659
>emb|CT833623.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA009H22, full insert sequence Length = 955 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 206 tcgccctcatcgtctacctcatcttc 231 ||||||||||| |||||||||||||| Sbjct: 237 tcgccctcatcttctacctcatcttc 262
>emb|CT832500.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026B17, full insert sequence Length = 1061 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 206 tcgccctcatcgtctacctcatcttc 231 ||||||||||| |||||||||||||| Sbjct: 228 tcgccctcatcttctacctcatcttc 253
>ref|NM_001060852.1| Oryza sativa (japonica cultivar-group) Os04g0685300 (Os04g0685300) mRNA, complete cds Length = 1125 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 206 tcgccctcatcgtctacctcatcttc 231 ||||||||||| |||||||||||||| Sbjct: 245 tcgccctcatcttctacctcatcttc 270
>gb|AC189346.1| Brassica rapa subsp. pekinensis clone KBrB042N05, complete sequence Length = 96650 Score = 44.1 bits (22), Expect = 1.0 Identities = 52/62 (83%) Strand = Plus / Minus Query: 259 atcattattgtggatgatggaagccctgatggaactcaagacattgtaaagcagctgcag 318 |||||| ||||||||||||| || ||||| || || ||||| ||||| ||||| || ||| Sbjct: 75740 atcattgttgtggatgatgggagtcctgacggcacacaagatattgtcaagcaacttcag 75681 Query: 319 ca 320 || Sbjct: 75680 ca 75679
>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete sequence Length = 94152 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 206 tcgccctcatcgtctacctcatcttc 231 ||||||||||| |||||||||||||| Sbjct: 68755 tcgccctcatcttctacctcatcttc 68730
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 206 tcgccctcatcgtctacctcatcttc 231 ||||||||||| |||||||||||||| Sbjct: 35037037 tcgccctcatcttctacctcatcttc 35037012
>dbj|AK104363.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C10, full insert sequence Length = 1076 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 206 tcgccctcatcgtctacctcatcttc 231 ||||||||||| |||||||||||||| Sbjct: 245 tcgccctcatcttctacctcatcttc 270
>dbj|AK070446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054G10, full insert sequence Length = 1128 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 206 tcgccctcatcgtctacctcatcttc 231 ||||||||||| |||||||||||||| Sbjct: 248 tcgccctcatcttctacctcatcttc 273
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 206 tcgccctcatcgtctacctcatcttc 231 ||||||||||| |||||||||||||| Sbjct: 96084 tcgccctcatcttctacctcatcttc 96059
>gb|AF039532.1|AF039532 Oryza sativa harpin induced gene 1 homolog (Hin1) mRNA, complete cds Length = 1089 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 206 tcgccctcatcgtctacctcatcttc 231 ||||||||||| |||||||||||||| Sbjct: 231 tcgccctcatcttctacctcatcttc 256
>dbj|AK231734.1| Sus scrofa mRNA, clone:LNG010017B12, expressed in lung Length = 1066 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 697 ggctatgtattccaaatggagatgattgt 725 |||||||| ||||| |||||||||||||| Sbjct: 626 ggctatgtcttccagatggagatgattgt 654
>emb|CT963110.1| Medicago truncatula chromosome 5 clone mth2-64f16, COMPLETE SEQUENCE Length = 109924 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 950 tataaatttgttaacattttc 970 ||||||||||||||||||||| Sbjct: 7827 tataaatttgttaacattttc 7807
>gb|BC068840.1| Xenopus laevis hypothetical protein LOC414689, mRNA (cDNA clone IMAGE:6636835), partial cds Length = 1066 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 694 aagggctatgtattccaaatggagatgat 722 ||||||||||| ||||| ||||||||||| Sbjct: 630 aagggctatgttttccagatggagatgat 658
>emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromosome 17, complete sequence Length = 166118 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 697 ggctatgtattccaaatggagatgattgt 725 |||||||| ||||| |||||||||||||| Sbjct: 154354 ggctatgtcttccagatggagatgattgt 154326
>gb|AC007166.7| Arabidopsis thaliana chromosome 2 clone F14P14 map mi421, complete sequence Length = 92569 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 tcatcgtctacctcatcttca 232 ||||||||||||||||||||| Sbjct: 51234 tcatcgtctacctcatcttca 51254
>gb|AC134466.4| Mus musculus BAC clone RP23-463E4 from chromosome 1, complete sequence Length = 183104 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 atcgtctacctcatcttcaag 234 ||||||||||||||||||||| Sbjct: 108214 atcgtctacctcatcttcaag 108234
>gb|BC097635.1| Xenopus laevis hypothetical protein MGC114892, mRNA (cDNA clone MGC:114892 IMAGE:5513569), complete cds Length = 984 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 694 aagggctatgtattccaaatggagatgat 722 ||||||||||| ||||| ||||||||||| Sbjct: 590 aagggctatgttttccagatggagatgat 618
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 atggtgaagaccgtgttctac 346 ||||||||||||||||||||| Sbjct: 134861 atggtgaagaccgtgttctac 134881
>emb|AL670446.8| Mouse DNA sequence from clone RP23-291H3 on chromosome 4, complete sequence Length = 171444 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 948 tgtataaatttgttaacattt 968 ||||||||||||||||||||| Sbjct: 16336 tgtataaatttgttaacattt 16356 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 167,304,921 Number of extensions: 8640252 Number of successful extensions: 166444 Number of sequences better than 10.0: 45 Number of HSP's gapped: 166439 Number of HSP's successfully gapped: 93 Length of query: 1047 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1024 Effective length of database: 18,503,978,556 Effective search space: 18948074041344 Effective search space used: 18948074041344 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
