ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf8h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK062807:Os04g0382900 30 1.2
2AK061001:Os04g0689900 30 1.2
3AK107884:Os02g0666000 28 2.7
4Os11g0644100:Os11g0644100 27 6.0
5Os01g0596600:Os01g0596600 27 6.0
6AK072836:Os01g0393000 27 6.0
7Os09g0410700:Os09g0410700 27 7.7
8AY256682:Os06g0493100 27 7.7
9AK063797:Os06g0493100 27 7.7

>AK062807:Os04g0382900 |
          Length = 134
 Score = 29.6 bits (65), Expect = 1.2
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +2

Query: 176 LNPQVCPKRP----SCATPGASYTN-GPKCIYHNR 265
           +NP +   R     SC   G SYT  G +CIYHNR
Sbjct: 98  VNPSLVADRQRCIGSCPARGGSYTGRGNQCIYHNR 132



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>AK061001:Os04g0689900 |
          Length = 278

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 242 PKCIYHNREAVCXXXXXQWPWP*CNVISAYLCVCIA 349
           P C YHN   +C      WP    +VISA L   +A
Sbjct: 242 PVCTYHNNRLICSASTRSWP----SVISALLFTFLA 273



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>AK107884:Os02g0666000 |
          Length = 97

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
 Frame = +1

Query: 52  DGPSHREQVI----------HGEDEEPCCAVGGRRPPPHSCGGRRDQRFRSAKPAGVPQA 201
           DGPS RE+V+            E+ E  CAV G  P           + R  +PAG P A
Sbjct: 32  DGPSEREEVVLDLGPELVVPAAEEGEQGCAVVGEEPA---------MQLRRQQPAGSPPA 82

Query: 202 S 204
           +
Sbjct: 83  A 83



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>Os11g0644100:Os11g0644100 |
          Length = 397

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +1

Query: 103 CCAVGGR--RPPPHSCGGRR 156
           C A GGR  R PP  CGGRR
Sbjct: 377 CPAKGGRGRRRPPSQCGGRR 396



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>Os01g0596600:Os01g0596600 |
          Length = 783

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 148 GRRDQRFRSAKPAGVPQASQL 210
           GRRD R R A+P   PQ++QL
Sbjct: 215 GRRDTRSRGARPIEDPQSTQL 235



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>AK072836:Os01g0393000 |
          Length = 96

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +1

Query: 127 PPPHSCGGRRDQRFRSAKPAGVPQASQLRYAWSELHQWP*MYIP*PRSGLLAATTP 294
           PPP   GG   +R R   P  +PQ   L       H  P  ++P P     AA  P
Sbjct: 14  PPPLPPGGAASRRHRRFLPTALPQVPPL-----PPHAAPPFFVPPPPPLRFAAPAP 64



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>Os09g0410700:Os09g0410700 |
          Length = 363

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 226 RSRRSAAGTLGAHLRV*RCEIVDPGVHRSCEEEDDDRQQRSMALR 92
           R+RR+   TLG  +R       D    + C++ DDD     + LR
Sbjct: 240 RARRAEITTLGGRVRSVLLITADEQQQQHCDDVDDDEDGHRLLLR 284



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>AY256682:Os06g0493100 |
          Length = 82

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 206 SCATPGASYTN-GPKCIYHNR 265
           +C TPG  YTN    CIY NR
Sbjct: 52  ACPTPGLPYTNPRDPCIYRNR 72



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>AK063797:Os06g0493100 |
          Length = 82

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 206 SCATPGASYTN-GPKCIYHNR 265
           +C TPG  YTN    CIY NR
Sbjct: 52  ACPTPGLPYTNPRDPCIYRNR 72


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 15,499,437
Number of extensions: 364914
Number of successful extensions: 1079
Number of sequences better than 10.0: 9
Number of HSP's gapped: 1077
Number of HSP's successfully gapped: 9
Length of query: 171
Length of database: 15,399,855
Length adjustment: 93
Effective length of query: 78
Effective length of database: 11,676,042
Effective search space: 910731276
Effective search space used: 910731276
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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