ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf9o06 |
|---|---|
| Clone Library Name | barley_pub |
>Q9CZU3:SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 - Mus musculus (Mouse)| Length = 1040 Score = 888 bits (2295), Expect = 0.0 Identities = 466/979 (47%), Positives = 634/979 (64%), Gaps = 4/979 (0%) Frame = +2 Query: 317 LPGSTAKRQNLARSCIHEVAVPNGYDLSKDEAVHGTLSNPAFNGEMAKTYPFQLDPFQSI 496 +P + C HEVA+P D + G+ AK YPF LD FQ Sbjct: 94 MPRVKVQSVETVEGCTHEVALPADEDY---------IPLKPRVGKAAKEYPFILDAFQRE 144 Query: 497 SIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEF 676 +I C++ N+SVLVSAHTSAGKT AEYAIA++ R+KQRVI+TSP+KALSNQKYRE+ +EF Sbjct: 145 AIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEF 204 Query: 677 SDVGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVW 856 DVGLMTGDVT+ P A+CLVMTTEILR+MLYRGSEV++EV WVIFDEIHYM+D ERGVVW Sbjct: 205 QDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVW 264 Query: 857 EESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGS 1036 EE+I+ LP + VFLSAT+ NA +FAEWIC+LHKQPCHV+YTD+RPTPLQHY+FP GG Sbjct: 265 EETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGD 324 Query: 1037 GLYLVVDENGQFREDNF----LKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSD 1204 GL+LVVDENG FREDNF L+D GRKGG G S+ Sbjct: 325 GLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG-------------TKGPSN 371 Query: 1205 IYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSAIFCLSE 1384 +++IVKMIM+R FQPVIIFSFS+++CE +A+ M+KLDFNT EEK +E+VF +AI CLS+ Sbjct: 372 VFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSD 431 Query: 1385 EDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPA 1564 ED+ LP +E +LPLLKRGI +HH G F EGL+KALFATETFAMG+NMPA Sbjct: 432 EDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPA 491 Query: 1565 KTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXXXXXXICVIMIDEKMEMSVIKDMVL 1744 +TV+FT+ +K+DG R+I+SGEYIQMS I ++M+DEKM ++ K ++ Sbjct: 492 RTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLK 551 Query: 1745 GKPAPLISTFRLSYYTILNLLSRAEGQFTAEHVIRNSFHQFQYEKALPEVVQKITKLENE 1924 G PL S F L+Y +LNLL R E + E+++ SF+QFQ+ +A+P VV+K+ E + Sbjct: 552 GSADPLNSAFHLTYNMVLNLL-RVE-EINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQ 609 Query: 1925 ATLLDSSGENDLAEYHKLGLDISELEKKIMSEIIRPERALLYLVPGRLVKVRDGSTDXXX 2104 + E ++ Y+K+ +++L K+I I +P+ L +L PGRLVKV++ D Sbjct: 610 YNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGW 669 Query: 2105 XXXXXXXXXXXXXXXXXXXXXXXRNNYIVDTLLHCSSSSSENGVNGPRSKPRPPRQGEKG 2284 Y+V+ LL CS S +N +P + EKG Sbjct: 670 GVVVNFSKKSNVKPNSGELDPL----YVVEVLLRCSKESLKNSAT---EAAKPAKPDEKG 722 Query: 2285 EMHXXXXXXXXXXXXXXXRISIPTDLRPPEARQNILFAVQELGKRYPQGLPKLHPITDMG 2464 EM R+ IP DLRP + RQ++L ++QE+ +R+P G+P L PI DMG Sbjct: 723 EMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMG 782 Query: 2465 IEEPELVDLVHKLDGLEQKLCSHPLNKSDQSEQQLSWYQRKAELNHEIQQLKSKMRDSQL 2644 I++ L ++ K++ E ++ SHPL+ E + +RKA++ +I+ K +++ ++ Sbjct: 783 IQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKART 842 Query: 2645 QKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAACLIDTGDELLITELMFNGTFNDLDHHQ 2824 DELK R RVL+ LG + V+++KGR AC I + DELL+TE+MFNG FNDL Q Sbjct: 843 VLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQ 902 Query: 2825 VASVVSCFVPCEKSSEQIRLRNELSKPMMQLSEAARKIAEVQRECKLDVNVEEYVESTCK 3004 +++SCFV E SSE +L +L+ P+ Q+ E A++IA+V E KL+++ E Y+ S+ K Sbjct: 903 ATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SSFK 961 Query: 3005 PYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKF 3184 P+LMDV+Y W+ GATF + +MTD+FEGSIIR +RRL+E L Q+ AA+A+G LE KF Sbjct: 962 PHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKF 1021 Query: 3185 GAASESLRRGIMFANSLYL 3241 ++R I+FA SLYL Sbjct: 1022 AEGITKIKRDIVFAASLYL 1040
>P42285:SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 - Homo sapiens (Human)| Length = 1042 Score = 888 bits (2294), Expect = 0.0 Identities = 473/1002 (47%), Positives = 642/1002 (64%), Gaps = 4/1002 (0%) Frame = +2 Query: 248 KRKAPELSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHEVAVPNGYDLSKDEAVHGTL 427 K + E +ED S A + +P + C HEVA+P D L Sbjct: 79 KPRIEESITEDLSLA------DLMPRVKVQSVETVEGCTHEVALPAEEDY---------L 123 Query: 428 SNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQ 607 G+ AK YPF LD FQ +I C++ N+SVLVSAHTSAGKT AEYAIA++ R+KQ Sbjct: 124 PLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQ 183 Query: 608 RVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVI 787 RVI+TSP+KALSNQKYRE+ +EF DVGLMTGDVT+ P A+CLVMTTEILR+MLYRGSEV+ Sbjct: 184 RVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVM 243 Query: 788 KEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQP 967 +EV WVIFDEIHYM+D ERGVVWEE+I+ LP + VFLSAT+ NA +FAEWIC+LHKQP Sbjct: 244 REVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQP 303 Query: 968 CHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNF----LKLQDTFAKQPSQPDG 1135 CHV+YTD+RPTPLQHY+FP GG GL+LVVDENG FREDNF L+D G Sbjct: 304 CHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKG 363 Query: 1136 RKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLD 1315 RKGG G S++++IVKMIM+R FQPVIIFSFS+++CE +A+ M+KLD Sbjct: 364 RKGG-------------TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLD 410 Query: 1316 FNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXX 1495 FNT EEK +E+VF +AI CLS+ED+ LP +E +LPLLKRGI +HH G Sbjct: 411 FNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEIL 470 Query: 1496 FQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXXX 1675 F EGL+KALFATETFAMG+NMPA+TV+FT+ +K+DG R+I+SGEYIQMS Sbjct: 471 FSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMD 530 Query: 1676 XXXICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHVIRNS 1855 I ++M+DEKM ++ K ++ G PL S F L+Y +LNLL R E + E+++ S Sbjct: 531 DRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLL-RVE-EINPEYMLEKS 588 Query: 1856 FHQFQYEKALPEVVQKITKLENEATLLDSSGENDLAEYHKLGLDISELEKKIMSEIIRPE 2035 F+QFQ+ +A+P VV+K+ E + + E + Y+K+ +++L K+I I +P+ Sbjct: 589 FYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPK 648 Query: 2036 RALLYLVPGRLVKVRDGSTDXXXXXXXXXXXXXXXXXXXXXXXXXXRNNYIVDTLLHCSS 2215 L +L PGRLVKV++ D Y+V+ LL CS Sbjct: 649 YCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPL----YVVEVLLRCSK 704 Query: 2216 SSSENGVNGPRSKPRPPRQGEKGEMHXXXXXXXXXXXXXXXRISIPTDLRPPEARQNILF 2395 S +N +P + EKGEM R+ IP DLRP + RQ++L Sbjct: 705 ESLKNSAT---EAAKPAKPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLK 761 Query: 2396 AVQELGKRYPQGLPKLHPITDMGIEEPELVDLVHKLDGLEQKLCSHPLNKSDQSEQQLSW 2575 ++QE+ KR+P G+P L PI DMGI++ L ++ K++ E ++ SHPL+ E + Sbjct: 762 SIQEVQKRFPDGIPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTL 821 Query: 2576 YQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAACLID 2755 ++KA++ +I+ K +++ ++ DELK R RVL+ LG + V+++KGR AC I Sbjct: 822 CEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEIS 881 Query: 2756 TGDELLITELMFNGTFNDLDHHQVASVVSCFVPCEKSSEQIRLRNELSKPMMQLSEAARK 2935 + DELL+TE+MFNG FNDL Q +++SCFV E SSE +L +L+ P+ Q+ E A++ Sbjct: 882 SADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKR 941 Query: 2936 IAEVQRECKLDVNVEEYVESTCKPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLVRRL 3115 IA+V E KL+++ E Y+ S+ KP+LMDV+Y W+ GATF + +MTD+FEGSIIR +RRL Sbjct: 942 IAKVSAEAKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRL 1000 Query: 3116 DEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL 3241 +E L Q+ AA+A+G LE KF ++R I+FA SLYL Sbjct: 1001 EELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042
>O14232:YDVG_SCHPO Uncharacterized helicase C6F12.16c - Schizosaccharomyces pombe| (Fission yeast) Length = 1117 Score = 835 bits (2157), Expect = 0.0 Identities = 455/975 (46%), Positives = 617/975 (63%), Gaps = 3/975 (0%) Frame = +2 Query: 326 STAKRQNLARSCIHEVAVPNGYDLSKDEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIA 505 ST + L H+V++P YD + +S A+TYPF LDPFQ++SIA Sbjct: 156 STEEVVELRHQVRHQVSIPPNYD-------YVPISKHKSPIPPARTYPFTLDPFQAVSIA 208 Query: 506 CLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDV 685 C+ER ESVLVSAHTSAGKT +AEYA+A S RDKQRVIYTSP+KALSNQKYREL EF DV Sbjct: 209 CIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDV 268 Query: 686 GLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEES 865 GLMTGDVT+ P+ATCLVMTTEILR+MLYRGSEV++EV WVIFDEIHYM+D+ERGVVWEE+ Sbjct: 269 GLMTGDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEET 328 Query: 866 IVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLY 1045 I+ LP VFLSAT+ NA +FAEWI +H+QPCHVVYTDFRPTPLQHY+FP G G++ Sbjct: 329 IILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLFPSGSDGIH 388 Query: 1046 LVVDENGQFREDNFLK-LQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVK 1222 LVVDE FRE+NF + + KQ P G G+ KGG G SDIY+IVK Sbjct: 389 LVVDEKSNFREENFQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGG-VKGPSDIYKIVK 447 Query: 1223 MIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLP 1402 MIM + + PVI+FSFS+RECE A+ MSKLD N Q E+D + +F +A+ LSE+DR LP Sbjct: 448 MIMVKNYNPVIVFSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELP 507 Query: 1403 AIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFT 1582 IE +LPLL+RGI +HHSG FQEGL+K LFATETF++GLNMPAKTVVFT Sbjct: 508 QIEHILPLLRRGIGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFT 567 Query: 1583 SVKKWDGDSNRYIASGEYIQMSXXXXXXXXXXXXICVIMIDEKMEMSVIKDMVLGKPAPL 1762 +V+K+DG + R+I+ GEYIQMS I ++MIDEKM+ V K M+ G+ L Sbjct: 568 NVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVILMIDEKMDPPVAKSMLKGEADRL 627 Query: 1763 ISTFRLSYYTILNLLSRAEGQFTAEHVIRNSFHQFQYEKALPEVVQKITKLENEATLLDS 1942 S F LSY ILNLL R EG + E ++ F QFQ +P++ K+ + + Sbjct: 628 DSAFHLSYNMILNLL-RVEG-ISPEFMLERCFFQFQNSLEVPKLEAKLEESQQHYDSFTI 685 Query: 1943 SGENDLAEYHKLGLDISELEKKIMSEIIRPERALLYLVPGRLVKVRDGSTDXXXXXXXXX 2122 E L EYH L + + + + P L +L GRLV+V+ G+ D Sbjct: 686 LDERPLEEYHTLKTQLERYRTDVRTVVNHPNFCLSFLQGGRLVRVKVGNED--FDWGVVV 743 Query: 2123 XXXXXXXXXXXXXXXXXRNNYIVDTLLHCSSSSSENGV-NGPRSKPRPPRQGEKGEMHXX 2299 + +YIV TL+ +S + + +G + PP +KG+ Sbjct: 744 NVSKRPLPKGQSNEYLPQESYIVHTLVMVASDTGPLRIRSGHLPEVHPPAAEDKGKFEVV 803 Query: 2300 XXXXXXXXXXXXXRISIPTDLRPPEARQNILFAVQELGKRYPQGLPKLHPITDMGIEEPE 2479 R+ +P DL+ + + A+ E+ +R+P+G+ L P+ +M I+EP Sbjct: 804 PFLLSSLDGIAHIRVFLPNDLKSQGQKLTVGKALSEVKRRFPEGITLLDPVENMNIKEPT 863 Query: 2480 LVDLVHKLDGLEQKLCSHPLNKSDQSEQQLSWYQRKAELNHEIQQLKSKMRDSQLQKFRD 2659 + L+ K++ LE +L S+PL+ + E++ + Y RK L E++ LK K+ ++ D Sbjct: 864 FIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALLEEVKDLKKKLSKARSIMQLD 923 Query: 2660 ELKNRSRVLKMLGHIDTDGVLQLKGRAACLIDTGDELLITELMFNGTFNDLDHHQVASVV 2839 EL +R RVL+ LG +D V+++KGR AC I +GD LL+TEL+FNG FNDL Q A+++ Sbjct: 924 ELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGMFNDLTPEQCAALL 983 Query: 2840 SCFVPCEKSS-EQIRLRNELSKPMMQLSEAARKIAEVQRECKLDVNVEEYVESTCKPYLM 3016 SC V EKS E R++ EL+ P+ L E AR+IA+V +E K ++N EEYV S KP LM Sbjct: 984 SCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQELNEEEYVNS-FKPSLM 1042 Query: 3017 DVIYCWSKGATFGEVIEMTDIFEGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKFGAAS 3196 +V+Y W+ GA+F ++ +MTD++EGS+IR+ RRL+E + Q+ AA+ +G +L++K Sbjct: 1043 EVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVDAAKVIGNTSLQQKMEDTI 1102 Query: 3197 ESLRRGIMFANSLYL 3241 + R I+F+ SLYL Sbjct: 1103 ACIHRDIVFSASLYL 1117
>P47047:MTR4_YEAST ATP-dependent RNA helicase DOB1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 1073 Score = 828 bits (2139), Expect = 0.0 Identities = 446/999 (44%), Positives = 633/999 (63%), Gaps = 8/999 (0%) Frame = +2 Query: 269 SSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHEVAVPNGYDLSKDEAVHGTLSNPAFNG 448 +S + ++ L E L + L+ H+VA+P YD + A H ++ Sbjct: 89 ASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPI-AEHKRVNE----- 142 Query: 449 EMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSP 628 A+TYPF LDPFQ +I+C++R ESVLVSAHTSAGKT +AEYAIA S ++KQRVIYTSP Sbjct: 143 --ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 200 Query: 629 LKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWVI 808 +KALSNQKYREL EF DVGLMTGD+T+ P+A CLVMTTEILR+MLYRGSEV++EV WVI Sbjct: 201 IKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVI 260 Query: 809 FDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTD 988 FDE+HYM+D+ERGVVWEE+I+ LP ++ VFLSAT+ NA EFAEWIC +H QPCH+VYT+ Sbjct: 261 FDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN 320 Query: 989 FRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQ-PSQPDGRKGGGPKASG 1165 FRPTPLQHY+FP G G+YLVVDE FRE+NF K + + Q P+ G K G Sbjct: 321 FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKK--G 378 Query: 1166 RIAKGGNASGTS--DIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEKD 1339 + KGG+A G + DIY+IVKMI +K+ PVI+FSFS+R+CE A+ MSKLDFN+ +EK+ Sbjct: 379 QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 438 Query: 1340 NIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKA 1519 + ++F +AI L E DR LP I+ +LPLL+RGI +HHSG FQEG +K Sbjct: 439 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKV 498 Query: 1520 LFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXXXXXXICVIM 1699 LFATETF++GLNMPAKTVVFTSV+KWDG R+++ GEYIQMS I ++M Sbjct: 499 LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 558 Query: 1700 IDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHVIRNSFHQFQYEK 1879 IDEKME V K MV G+ L S F L Y ILNL+ R EG + E ++ +SF QFQ Sbjct: 559 IDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLM-RVEG-ISPEFMLEHSFFQFQNVI 616 Query: 1880 ALPEVVQKITKLENEATLLDSSGENDLAEYHKLGLDISELEKKIMSEIIRPERALLYLVP 2059 ++P + +K+ +L+ + ++ E ++ EYH++ I + + + P AL +L P Sbjct: 617 SVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQP 676 Query: 2060 GRLVKVRDGSTDXXXXXXXXXXXXXXXXXXXXXXXXXXRNNYIVDTLLHCSSSSSENGVN 2239 GRLV++ D +YIV+ +++ S + Sbjct: 677 GRLVEISVNGKD-NYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLL 735 Query: 2240 GPRSKP-----RPPRQGEKGEMHXXXXXXXXXXXXXXXRISIPTDLRPPEARQNILFAVQ 2404 P + RP +GEK R+ +P D+R ++ + +++ Sbjct: 736 KPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLR 795 Query: 2405 ELGKRYPQGLPKLHPITDMGIEEPELVDLVHKLDGLEQKLCSHPLNKSDQSEQQLSWYQR 2584 E+ +R+P G+P L P+ +M IE+ + + L+ K+D L KL S+PL S + E+ Y R Sbjct: 796 EVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSR 855 Query: 2585 KAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAACLIDTGD 2764 K +L+ +++QLK K+ +SQ D+L+ R RVL+ LG + +++LKGR AC I +GD Sbjct: 856 KHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGD 915 Query: 2765 ELLITELMFNGTFNDLDHHQVASVVSCFVPCEKSSEQIRLRNELSKPMMQLSEAARKIAE 2944 ELL+TEL+FNG FN+L Q A+++SCF E+ E RL+ EL++P+ + E A KIA+ Sbjct: 916 ELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAK 975 Query: 2945 VQRECKLDVNVEEYVESTCKPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLVRRLDEF 3124 + ++ K++V ++YVES + LM+V+Y W +GATF ++ +MTD++EGS+IR+ +RL+E Sbjct: 976 IMKDSKIEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEEL 1034 Query: 3125 LNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL 3241 + +L A +G +L++K A + + R I+ A SLYL Sbjct: 1035 VKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1073
>Q23223:YH2O_CAEEL Uncharacterized helicase W08D2.7 - Caenorhabditis elegans| Length = 1026 Score = 739 bits (1907), Expect = 0.0 Identities = 420/1033 (40%), Positives = 602/1033 (58%), Gaps = 27/1033 (2%) Frame = +2 Query: 224 MEEVENSSKRKAPE--------------LSSEDNSSAVVLHEQEPLPGSTAKRQNLA--- 352 ME+++++ KR+A E + + D +++ +E A+ +N+ Sbjct: 28 MEKLDSAKKRQAREDMTNLLANMHNDVGVGNFDEATSKRARVEEEEEVEEARMENIIVHT 87 Query: 353 -----RSCIHEVAVPNGYDLSKDEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLER 517 +C HEVA+P + ++ GT E AK YPFQLD FQ +I C++ Sbjct: 88 IRTDNENCTHEVAIPPNAEFAELRENSGT--------EPAKYYPFQLDAFQKQAILCIDN 139 Query: 518 NESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMT 697 N+SVLVSAHTSAGKT +A YAIA R+KQRVIYTSP+KALSNQKYREL +EF DVGLMT Sbjct: 140 NQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIKALSNQKYRELEEEFKDVGLMT 199 Query: 698 GDVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFL 877 GDVTL P+A+CLVMTTEILR+MLYRGSE++KEVGWV++DEIHYM+D+ERGVVWEE+I+ + Sbjct: 200 GDVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVVYDEIHYMRDKERGVVWEETIILM 259 Query: 878 PPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVD 1057 IK FLSAT+ NA +FA+W+ ++ +QP +VVYTD+RPTPLQH+++P+GG G+Y VV+ Sbjct: 260 SKNIKQAFLSATIPNARQFAQWVASIKQQPVNVVYTDYRPTPLQHWIYPVGGEGMYEVVN 319 Query: 1058 ENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDR 1237 G+FRED F A G + + GG G S++ +I++ + Sbjct: 320 VKGEFREDKFRDAMSGLA--------TAGDSAGSFNKRRTGGGTQGDSNVLKIIRSVASN 371 Query: 1238 KFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELM 1417 I+FSFSR+ECE +A+S+ +DFN EK ++ V+ SAI LS ED+ LP I + Sbjct: 372 DGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNI 431 Query: 1418 LPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKW 1597 LPLL+RGI VHHSG F EGLVK LFATETF+MGLNMPA+TVVFTS +K+ Sbjct: 432 LPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKF 491 Query: 1598 DGDSNRYIASGEYIQMSXXXXXXXXXXXXICVIMIDEKMEMSVIKDMVLGKPAPLISTFR 1777 DG NRYI SGEYIQM+ ++M+D M K ++ G PL S FR Sbjct: 492 DGSDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFR 551 Query: 1778 LSYYTILNLLSRAEGQFTAEHVIRNSFHQFQYEKALPEVVQKITKLENEATLLDSSGEND 1957 L+Y +LNL+ R EG +I NSFHQFQ +PE+ +K ++E + + EN+ Sbjct: 552 LTYNMVLNLM-RVEG-MAVSWIINNSFHQFQSYAKIPEIDKKCVQVERKIASFNFPWENE 609 Query: 1958 LAEYHKLGLDISELEKKIMSEIIRPERALLYLVPGRLVKVRDGSTDXXXXXXXXXXXXXX 2137 + L + ++I+ P+ + +L GRL KV+ G D Sbjct: 610 MRTLVDLQDQLEATRQRIIQIQREPKYIVGFLHAGRLFKVKSGDRD---------FKWGI 660 Query: 2138 XXXXXXXXXXXXRNN--YIVDTLLHCSSSSSENGVNGPRSKP---RPPRQGEKGEMHXXX 2302 RN+ Y+ D ++ ++ + N P P R+ + M Sbjct: 661 LNQFKKEQNPDDRNDQIYLCDMMIAINTEGRFDPTNPATLVPGFDLPKRRWIRVPM---- 716 Query: 2303 XXXXXXXXXXXXRISIPTDLRPPEARQNILFAVQELGKRYPQGLPKLHPITDMGIEEPEL 2482 R+ +P D+ P+ + + + KR+ +P L PI DM I+ E+ Sbjct: 717 -TIDRITAISAVRLKVPADIDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQDMEIKTVEM 775 Query: 2483 VDLVHKLDGLEQKLCSHPLNKSDQSEQQLSWYQRKAELNHEIQQLKSKMRDSQLQKFRDE 2662 +L+ + LE +L +H + K D + +++K + E+ LK++ + Q +E Sbjct: 776 KELIAREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHLEE 835 Query: 2663 LKNRSRVLKMLGHIDTDGVLQLKGRAACLIDTGDELLITELMFNGTFNDLDHHQVASVVS 2842 L NR RVL+ LG++ D L LKG AC + DEL++TE++ G FN LD Q A+++S Sbjct: 836 LNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAALLS 895 Query: 2843 CFVPCEKSSEQIRLRNELSKPMMQLSEAARKIAEVQRECKLDVNVEEYVESTCKPYLMDV 3022 CFV +K + +L EL + +L E AR +A+V ECK++V ++YV S+ P LMDV Sbjct: 896 CFVFQDKCAAP-KLATELQTCLSELHEQARNVAKVSNECKMEVMEDKYV-SSFNPGLMDV 953 Query: 3023 IYCWSKGATFGEVIEMTDIFEGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASES 3202 +Y W GATF E+++ TD+FEGSIIR +RRL+E L ++ AA+A+ LE+KF A ++ Sbjct: 954 VYQWVNGATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKN 1013 Query: 3203 LRRGIMFANSLYL 3241 L+R I+FA SLYL Sbjct: 1014 LKRDIVFAASLYL 1026
>O13799:YE02_SCHPO Uncharacterized helicase C17H9.02 - Schizosaccharomyces pombe| (Fission yeast) Length = 1030 Score = 714 bits (1843), Expect = 0.0 Identities = 402/1007 (39%), Positives = 598/1007 (59%), Gaps = 1/1007 (0%) Frame = +2 Query: 224 MEEVENSSKRKAPELSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHEVAVPNGYDLSK 403 +E + +SS K +S S AV E + L +++ +H+V VP+ YD Sbjct: 51 IENLSDSSVNKEYAKNSLKLSDAV--SESKYLNPLLKDKRHDRSFALHKVVVPDDYD--- 105 Query: 404 DEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAI 583 + L+ + AKTYPF+LDPFQS +I C+ER ESVLVSAHTSAGKT IAEYAI Sbjct: 106 ----YIPLNKHIPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAI 161 Query: 584 AMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAM 763 A + +++QRVIYTSP+K+LSNQKYREL EF DVGLMTGDV++ P+A+CL+MTTEILRAM Sbjct: 162 AQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIMTTEILRAM 221 Query: 764 LYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEW 943 LY+ SE++ E+ WVIFDE+HYM+D++RGVVWEE+++ LP AI+ +FLSAT+ NA +FA W Sbjct: 222 LYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARW 281 Query: 944 ICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPS 1123 I +HKQPCHVVYTD+RPTPLQH+++P G G+Y++VDE +F+ +NF K+ + Sbjct: 282 ISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVL----- 336 Query: 1124 QPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSM 1303 R+ K+S ++ K +S + RI+ M++ ++ P+I+F FS++ECE +A Sbjct: 337 DHSTRQENYSKSSKKVKK------SSSLERIINMVLSNRYDPIIVFCFSKKECEINAHQF 390 Query: 1304 SKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXX 1483 KLD N E K+ + ++F SAI LSEEDRGL E M LL RGI +HHSG Sbjct: 391 GKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKEL 450 Query: 1484 XXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXX 1663 FQEGLV+ LFATETF++GLNMPA+TV+FT +K+ G++ R++ SGEY+QMS Sbjct: 451 VEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGR 510 Query: 1664 XXXXXXXICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHV 1843 + ++++D+ ++ + ++ G+ L S F LSY ILNL+ R E + + E + Sbjct: 511 RGIDTKGLSIVILDQSIDEQAARCLMNGQADVLNSAFHLSYGMILNLM-RIE-EISPEDI 568 Query: 1844 IRNSFHQFQYEKALPEVVQKITKLENEATLLDSSGENDLAEYHKLGLDISELEKKIMSEI 2023 ++ SF+QFQ ++LP + +++ +L+NE T ++ E + E+H L L + + ++I + Sbjct: 569 LKKSFYQFQNMESLPLIKEELMQLKNEETSINIPNETAVKEFHDLKLQLEKYGEEIQKVM 628 Query: 2024 IRPERALLYLVPGRLVKVRDGSTDXXXXXXXXXXXXXXXXXXXXXXXXXXRNNYIVDTLL 2203 P+ L YL GRL++++ G Y++D LL Sbjct: 629 THPDNCLPYLQSGRLIQIKLGG--IIFPWGVLVNVIKREFDPNTREQVAPHETYVLDVLL 686 Query: 2204 HCSSSSSENGVNGPRSKPRPPRQGEKGEMHXXXXXXXXXXXXXXXRISIPTDLRPPEARQ 2383 SS+S N P S PPR E RI +P +L E++ Sbjct: 687 PISSNSMSNHKVNP-SILVPPRPNETPLYEIVSVLLTAVCNISSIRIYMPRELNSNESKL 745 Query: 2384 NILFAVQELGKRYPQGLPKLHPITDMGIEEPELVDLVHKLDGLEQKLCSHPLNKSDQSEQ 2563 V E+ + + + +P L P+ M IE L + KL+ LE KL P K + Sbjct: 746 RAYRRVNEVIEEFKE-IPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSPYYKDSKHRA 804 Query: 2564 QLSWYQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAA 2743 + +++K L +I+ + +K+ +++ ELK R RVL+ LG + V+ +KGR A Sbjct: 805 EYHEFRKKLNLRAQIKDISTKITNTEAIIQLRELKIRQRVLRRLGFCTLENVIDIKGRVA 864 Query: 2744 CLIDTGDELLITELMFNGTFNDLDHHQVASVVSCFVPCEKSS-EQIRLRNELSKPMMQLS 2920 C I +GDELL+ EL+F G FN + ++A+ +SCFV +KS + L+ K + + Sbjct: 865 CEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFVYEDKSEVSTLNLKEPFKKMYLTII 924 Query: 2921 EAARKIAEVQRECKLDVNVEEYVESTCKPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIR 3100 EAA++IA V E KL N +Y+ KP +M+ + W GA+F E+ ++ ++EGSI+R Sbjct: 925 EAAKRIATVSLESKLQFNESDYLHQ-FKPDIMEPVSLWINGASFQEICIVSKLYEGSIVR 983 Query: 3101 LVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL 3241 RRLDE L QL+ AA +G L++K + L R I+F+ SLYL Sbjct: 984 TFRRLDELLKQLEHAAIVLGNNELKEKSVLTEQKLHRDIIFSASLYL 1030
>Q15477:SKIV2_HUMAN Helicase SKI2W - Homo sapiens (Human)| Length = 1246 Score = 392 bits (1007), Expect = e-108 Identities = 229/566 (40%), Positives = 329/566 (58%), Gaps = 13/566 (2%) Frame = +2 Query: 425 LSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDK 604 + PAF + F+ D FQ +I LER++SV V+AHTSAGKT +AEYAIA++ + Sbjct: 300 IPQPAFQ------WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHM 353 Query: 605 QRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEV 784 R IYTSP+KALSNQK+R+ F DVGL+TGDV L P A+CL+MTTEILR+MLY GS+V Sbjct: 354 TRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDV 413 Query: 785 IKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQ 964 I+++ WVIFDE+HY+ D ERGVVWEE ++ LP + ++ LSAT+ NA EFA+WI L ++ Sbjct: 414 IRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRR 473 Query: 965 PCHVVYTDFRPTPLQHYVFPIGGS----GLYLVVDENGQFREDNFLKLQDTFAKQPSQPD 1132 +V+ T RP PL+HY+F S L+L++D G F + + ++ S+ Sbjct: 474 QIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHA 533 Query: 1133 GRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKL 1312 G A +GG A ++ + R PV++F+FSR C+ A ++ L Sbjct: 534 QTFG----AKQPTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSL 589 Query: 1313 DFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXX 1492 D T EK I + + L DR LP + M LL RG+ VHHSG Sbjct: 590 DLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEM 649 Query: 1493 XFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXX 1672 F GLVK LFATETFAMG+NMPA+TVVF S++K DG + R + GEY+QM+ Sbjct: 650 LFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGL 709 Query: 1673 XXXXICVIMIDEKM-EMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHVIR 1849 +++ ++ EM+ + M++GKP+ L S FRL+Y ILNLL R + E +++ Sbjct: 710 DPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLL-RVDA-LRVEDMMK 767 Query: 1850 NSFHQF-------QYEKALPEVVQKITKLENEATLLDSSGE-NDLAEYHKLGLDISELEK 2005 SF +F +E+AL E+ +++ LE D +G+ DL EY+ G +++E + Sbjct: 768 RSFSEFPSRKDSKAHEQALAELTKRLGALEEP----DMTGQLVDLPEYYSWGEELTETQH 823 Query: 2006 KIMSEIIRPERALLYLVPGRLVKVRD 2083 I I+ L L GR+V V++ Sbjct: 824 MIQRRIMESVNGLKSLSAGRVVVVKN 849 Score = 137 bits (344), Expect = 4e-31 Identities = 94/294 (31%), Positives = 156/294 (53%), Gaps = 3/294 (1%) Frame = +2 Query: 2366 PPEARQNILFAVQEL---GKRYPQGLPKLHPITDMGIEEPELVDLVHKLDGLEQKLCSHP 2536 PP A + AVQEL + +P G P L P+ D+ +++ +V+ + LE+ + Sbjct: 956 PPLAA--VTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELIQGAQ 1013 Query: 2537 LNKSDQSEQQLSWYQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDG 2716 S + Q + + ++ E+++L+ + D L F E R VL+ LG++D G Sbjct: 1014 CVHSPRFPAQYLKLRERMQIQKEMERLRFLLSDQSLLLF-PEYHQRVEVLRTLGYVDEAG 1072 Query: 2717 VLQLKGRAACLIDTGDELLITELMFNGTFNDLDHHQVASVVSCFVPCEKSSEQIRLRNEL 2896 ++L GR AC + + ELL+TELMF+ + L ++A+++S V +L N L Sbjct: 1073 TVKLAGRVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTL 1131 Query: 2897 SKPMMQLSEAARKIAEVQRECKLDVNVEEYVESTCKPYLMDVIYCWSKGATFGEVIEMTD 3076 + + ++ A++I EVQ C L+ VEE+V L++V+Y W++G F E+ ++ Sbjct: 1132 KQGIERVRAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFSELAGLSG 1190 Query: 3077 IFEGSIIRLVRRLDEFLNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLY 3238 EG ++R ++RL E L+ AA VGE L K A+ LRR I+FA SLY Sbjct: 1191 TPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
>P35207:SKI2_YEAST Antiviral helicase SKI2 - Saccharomyces cerevisiae (Baker's yeast)| Length = 1287 Score = 384 bits (985), Expect = e-105 Identities = 237/671 (35%), Positives = 362/671 (53%), Gaps = 49/671 (7%) Frame = +2 Query: 218 KEMEEVENSSKRKAPELSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHEVAVPNGYDL 397 K + + +A E ++ DN+ + E P+ + + +++S + + DL Sbjct: 249 KSAKSISEEIMEEATEETTADNADDAEIDELLPIGIDFGRTKPVSKSVPVKKEWAHVVDL 308 Query: 398 S-KDEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAE 574 + K E + NPA +++PF+LD FQ ++ LE+ +SV V+AHTSAGKT +AE Sbjct: 309 NHKIENFDELIPNPA------RSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAE 362 Query: 575 YAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDV--GLMTGDVTLQPNATCLVMTTE 748 YAIAM+ R+ + IYTSP+KALSNQK+R+ + F DV GL+TGDV + P+A CL+MTTE Sbjct: 363 YAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTE 422 Query: 749 ILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNAT 928 ILR+MLYRG+++I++V +VIFDE+HY+ D++RGVVWEE I+ LP +K + LSAT+ N Sbjct: 423 ILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY 482 Query: 929 EFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTF 1108 EFA WI ++ +V+ T RP PL+ ++ L V+++N +F E NF K ++ Sbjct: 483 EFANWIGRTKQKNIYVISTPKRPVPLEINIW--AKKELIPVINQNSEFLEANFRKHKEIL 540 Query: 1109 AKQ-----PSQPDGRKGGGPKASGR------IAKGGNASGT------------------- 1198 + PS+ D +GG GR +GG + T Sbjct: 541 NGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNK 600 Query: 1199 -----------SDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEKDNI 1345 IV + R+ P+++F FS++ CE +A + ++F +EK I Sbjct: 601 RKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQI 660 Query: 1346 EQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALF 1525 +I L +EDR LP I LL+RGIAVHH G F +G +K LF Sbjct: 661 HMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLF 720 Query: 1526 ATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXXXXXXICVIM-I 1702 ATETFAMGLN+P +TV+F+S++K DG+ R + GE+ QM+ ++M Sbjct: 721 ATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 780 Query: 1703 DEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHVIRNSFHQFQYEKA 1882 + + ++ K++ +G P L S FRL+Y ILNLL R E E +I+ SF + E Sbjct: 781 NSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLL-RIEA-LRVEEMIKYSFSENAKETL 838 Query: 1883 LPEVVQKITKLENEATLLDSSG----ENDLAEYHKLGLDISELEKKIMSEIIRPERALLY 2050 PE ++I L+ E ++ +ND+ ++ +L L E +M E+++ L Sbjct: 839 QPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSILHI 898 Query: 2051 LVPGRLVKVRD 2083 L GRLV RD Sbjct: 899 LKEGRLVAFRD 909 Score = 103 bits (258), Expect = 4e-21 Identities = 68/219 (31%), Positives = 120/219 (54%), Gaps = 3/219 (1%) Frame = +2 Query: 2594 LNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAACLIDTGDELL 2773 + +I++L M D L D K R VLK ID + + LKGR AC I++G EL+ Sbjct: 1070 IKKKIEELYHLMSDQNLSLLPDYEK-RLAVLKDTEFIDQNHNVLLKGRVACEINSGYELV 1128 Query: 2774 ITELMFNGTFNDLDHHQVASVVSCFVPCEKSSEQIR--LRNELSKPMMQLSEAARKIAEV 2947 +TEL+ + + ++ +++S FV K+ E+ + L+K ++ E +K+ V Sbjct: 1129 LTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCV 1188 Query: 2948 QRECKLDVNVEEYVESTCKPY-LMDVIYCWSKGATFGEVIEMTDIFEGSIIRLVRRLDEF 3124 ++ + +E K + +M+V+Y W++G +F E++EM+ EG+++R++ LDE Sbjct: 1189 FNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEI 1248 Query: 3125 LNQLKAAAEAVGEVNLEKKFGAASESLRRGIMFANSLYL 3241 ++K A+ +G L K A E ++R I+FA SLYL Sbjct: 1249 CREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 1287
>Q10701:HELY_MYCTU Probable helicase helY - Mycobacterium tuberculosis| Length = 906 Score = 252 bits (643), Expect = 9e-66 Identities = 172/531 (32%), Positives = 269/531 (50%), Gaps = 18/531 (3%) Frame = +2 Query: 467 PFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSN 646 PF LD FQ + + LER VLV A T AGKT + E+A+ ++ + YT+PLKALSN Sbjct: 15 PFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKALSN 74 Query: 647 QKYRELSQEFS--DVGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWVIFDEI 820 QK+ +L+ + +GL+TGD+++ NA +VMTTE+LR MLY S ++ + +V+ DE+ Sbjct: 75 QKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYVVMDEV 134 Query: 821 HYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPT 1000 H++ DR RG VWEE I+ LP +++V LSAT+SNA EF WI + + VV + RP Sbjct: 135 HFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTV-RGDTTVVVDEHRPV 193 Query: 1001 PLQHYVFPIGGSGL-----YLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPKASG 1165 PL +V + G + Y + + GQ + + L + + D P+ G Sbjct: 194 PLWQHV--LVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRR---EADRMADWQPRRRG 248 Query: 1166 RIAKGGNASGTSDIYR------IVKMIMDRKFQPVIIFSFSRRECEHHAMS--MSKLDFN 1321 SG YR ++ + P I F FSR C+ S L Sbjct: 249 --------SGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 Query: 1322 TQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQ 1501 ++EE+ I +V L++ D + L RG+A HH+G F Sbjct: 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 Query: 1502 EGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXXXXX 1681 GLVKA+FATET A+G+NMPA+TVV + K++G+ + + GEY Q++ Sbjct: 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 Query: 1682 XICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHVIRNSFH 1861 V++ ++E S + + + PL S+F SY +NL+ R G A ++ SF Sbjct: 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRM-GPQQAHRLLEQSFA 479 Query: 1862 QFQYEKALPEVVQKI---TKLENEATLLDSSGENDLAEYHKLGLDISELEK 2005 Q+Q ++++ +V+ I ++ E + + EY +L +SELE+ Sbjct: 480 QYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELER 530
>Q9ZBD8:HELY_MYCLE Probable helicase helY - Mycobacterium leprae| Length = 920 Score = 234 bits (597), Expect = 2e-60 Identities = 168/534 (31%), Positives = 268/534 (50%), Gaps = 21/534 (3%) Frame = +2 Query: 467 PFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSN 646 PF LD FQ + A LER VLV A T AGKT + E+A+ ++ + YT+PLKALSN Sbjct: 15 PFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPLKALSN 74 Query: 647 QKYRELSQEF--SDVGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWVIFDEI 820 QKY +L+ + + +GL+TGD ++ ++ +VMTTE+LR MLY S ++ + V+ DE+ Sbjct: 75 QKYTDLTARYGRNRIGLLTGDQSVNGDSPVVVMTTEVLRNMLYADSFALQGLSHVVMDEV 134 Query: 821 HYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPT 1000 H++ DR RG VWEE I+ LP ++MV LSAT+SNA EF W+ + + VV + RP Sbjct: 135 HFIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGGWVQTV-RGDTTVVVDEHRPV 193 Query: 1001 PLQHYVFPIGGSGLYLVVDENGQFRED----NFLKLQDTFAKQPSQPDGRKGGGPKASGR 1168 PL +V + G L+ + D + + N L+ + D R P+ Sbjct: 194 PLWQHV--LVGKRLFDLFDYDSNVDQSPVNPNLLRHIAHCREADRMSDWR---NPR---- 244 Query: 1169 IAKGGNASGTSD-IYR------IVKMIMDRKFQPVIIFSFSRRECEHHAMS--MSKLDFN 1321 + G SG YR ++ ++ P I F FSR C+ S L Sbjct: 245 -RRAGRGSGVRPRFYRSLARPEVIAILDAEGLLPAITFVFSRFGCDAAVQQCLRSPLRLT 303 Query: 1322 TQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQ 1501 ++EE+ I +V L++ D + L RG+A HH+G F Sbjct: 304 SEEERAQIAEVIDHRCGDLADADLAVLGYYEWREGLLRGLAAHHAGMLPAFRHAVEELFT 363 Query: 1502 EGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXXXXX 1681 GLVKA+FATET A+G+NMPA+TVV + K++G + + GEY Q++ Sbjct: 364 AGLVKAVFATETLALGINMPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRRGIDVE 423 Query: 1682 XICVIM---IDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHVIRN 1852 V++ ++ S + + + PL S+F SY +NL+ + A ++ Sbjct: 424 GHAVVIWHPSEDTSGPSAVAGLASARTFPLRSSFVPSYNMTINLVHWMSPE-RAHALLEQ 482 Query: 1853 SFHQFQYEKA---LPEVVQKITKLENEATLLDSSGENDLAEYHKLGLDISELEK 2005 SF Q+Q +++ L +++ T++ + + + + EY +L I+E+E+ Sbjct: 483 SFAQYQADRSVVGLVRGIERCTQVLGDISSELGGPDAPILEYARLRARIAEMER 536 Score = 41.2 bits (95), Expect = 0.031 Identities = 57/259 (22%), Positives = 104/259 (40%), Gaps = 18/259 (6%) Frame = +2 Query: 2498 KLDGLEQKLCSHPLNKS---DQSEQQLSWYQRKAELNHEIQQLKSKMRDSQLQKFRDELK 2668 +L L +L H N + D QQ Y R N ++Q+ + +S + F Sbjct: 668 ELASLRAQLRRHRSNNAPGLDTQLQQAERYLRIERYNAQLQRKVAAATNSLARTF----- 722 Query: 2669 NRSRVLKMLGHID------TDGVLQLKGRAACLIDTGDELLITELMFNGTFNDLDHHQVA 2830 R++ +L D D + GR I + +LL+ E + G + L ++A Sbjct: 723 --DRIVGLLIERDFIRGPADDPQVTDDGRLLARIYSESDLLVAECLRTGAWAGLRPAELA 780 Query: 2831 SVVSCFVPCEKSSEQIRLRNELSKPMMQLSEAARKIAEVQRECKLDVNVEEYVESTCKPY 3010 +VVS + + + + P +L +A + + + + D S +P Sbjct: 781 AVVSAVLYETRGDDGPGGPVDAEAPTPRLRQALQHTSRLSATLRADEQRHRIALSR-EPD 839 Query: 3011 --LMDVIYCWSKGATFGEVIEMTD-------IFEGSIIRLVRRLDEFLNQLKAAAEAVGE 3163 + VIYCW++ V+ D + G +R R++ + L+QL+ AA E Sbjct: 840 DGFVGVIYCWARTGDLAAVLAAADASGNGAPLSAGDFVRWCRQVLDLLDQLRNAAP---E 896 Query: 3164 VNLEKKFGAASESLRRGIM 3220 +L A +RRG++ Sbjct: 897 PDLRATAKRAINDVRRGVV 915
>Q9HJX7:HELS_THEAC Putative ski2-type helicase - Thermoplasma acidophilum| Length = 674 Score = 136 bits (343), Expect = 5e-31 Identities = 114/444 (25%), Positives = 198/444 (44%), Gaps = 11/444 (2%) Frame = +2 Query: 470 FQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQ 649 FQL Q ++I + + +V+VS T+AGKT IA AI +F+ + IY PL++L+ + Sbjct: 21 FQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAME 80 Query: 650 KYRELSQEFSDVGLMT----GDVTLQPN----ATCLVMTTEILRAMLYRGSEVIKEVGWV 805 K+ ELS+ D+GL GD P+ +++T+E ++L+ ++ +VG + Sbjct: 81 KFSELSR-LRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHHDPYILNDVGLL 139 Query: 806 IFDEIHYMKDRERGVVWE--ESIV-FLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHV 976 + DEIH + D RG E SI ++ P ++++ LSAT+SNA E A W+ + Sbjct: 140 VLDEIHTIGDESRGPTLETVASIARYVNPDVRILALSATVSNAMELASWL------DASL 193 Query: 977 VYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPK 1156 + +DFRP PL+ + +R+ +L DG++ G Sbjct: 194 IKSDFRPVPLKTGIL----------------YRDQLYL-------------DGKRRSG-- 222 Query: 1157 ASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEK 1336 I +I++ ++ Q V++F SR++ E A ++ Sbjct: 223 --------------VSINQIIRETVEDNGQ-VLMFVSSRKKAEDTARDLA---------- 257 Query: 1337 DNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVK 1516 Q+F S D +++ +L RG+A HH+G F+ +K Sbjct: 258 ----QIFGSDANIKISSDETNVYDDMLNEILPRGVAFHHAGLSNDQRAFIEREFRARRIK 313 Query: 1517 ALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXXXXXXICVI 1696 + AT T A G+N+PA+ V+ + +W D Y+ + E QM I +I Sbjct: 314 VIVATPTLAAGVNLPARLVIVRDITRWGSDGISYLTNMEIKQMIGRAGRPGYDQYGIGLI 373 Query: 1697 MIDEKMEMSVIKDMVLGKPAPLIS 1768 + + KD + P P++S Sbjct: 374 YVSSQSSYEAAKDYLSTDPEPVVS 397
>Q97AI2:HELS_THEVO Putative ski2-type helicase - Thermoplasma volcanium| Length = 674 Score = 134 bits (337), Expect = 3e-30 Identities = 135/543 (24%), Positives = 236/543 (43%), Gaps = 17/543 (3%) Frame = +2 Query: 470 FQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQ 649 F+L Q ++I + ++++VS T+AGKT IA AI +F+ K + IY PL++L+ + Sbjct: 21 FELYDHQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAME 80 Query: 650 KYRELSQEFSDVG----LMTGDVTLQPN----ATCLVMTTEILRAMLYRGSEVIKEVGWV 805 KY ELS+ ++G L G+ P+ +++T+E ++++ +++EVG + Sbjct: 81 KYEELSR-LRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHHDPYMMEEVGLM 139 Query: 806 IFDEIHYMKDRERGVVWEESIV---FLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHV 976 + DEIH + D RG E I ++ P +++ LSAT+SNA+E AEW+ + Sbjct: 140 VIDEIHMIGDEYRGPTLETVITTARYVNPETRIIALSATVSNASEIAEWL------NASL 193 Query: 977 VYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPK 1156 + + FRP PL+ + LY Sbjct: 194 IKSSFRPVPLKVGI-------LY------------------------------------- 209 Query: 1157 ASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEK 1336 R+ G+A DI +VK +D Q V+IF SR+ E A ++S+L + K Sbjct: 210 -RNRLFLDGDARSDVDINLLVKETVDDGGQ-VLIFVSSRKRAEDMAKNLSQLFDPINDLK 267 Query: 1337 DNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVK 1516 +S ED + +L+ +L G++ HH+G F+ +K Sbjct: 268 -------------VSSEDANV-YDDLLNEMLPHGVSFHHAGLSNEQRSFIEKAFRHRKLK 313 Query: 1517 ALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXXXXXXICVI 1696 + AT T A G+N+PA+ V+ V ++ Y+++ E QM I +I Sbjct: 314 VIVATPTLAAGVNLPARLVIVKDVTRYGDLGITYLSNMEVKQMIGRAGRPGYDQYGIGII 373 Query: 1697 MIDEKMEMSVIKDMVLGKPAPLISTF----RLSYYTILNL-LSRAEGQFTAEHVIRNSFH 1861 V+K+ + +P P+ S ++ + T+ + + A Q E R++F+ Sbjct: 374 YAASANSYQVVKEYISEEPEPVDSYIGKPEKVRFNTLAAIAMGLATSQVEMEEFYRSTFY 433 Query: 1862 QFQY-EKALPEVVQKITKLENEATLLDSSGENDLAEYHKLGLDISELEKKIMSEIIRPER 2038 Q E +P + + K E + K L +E K I + I PE Sbjct: 434 YAQNGEDEIPNRINESIKFLKENGFIK----------EKDSLRATEFGKMISNLYIDPES 483 Query: 2039 ALL 2047 A++ Sbjct: 484 AII 486
>Q97VY9:HELS_SULSO Putative ski2-type helicase - Sulfolobus solfataricus| Length = 708 Score = 115 bits (289), Expect = 1e-24 Identities = 123/475 (25%), Positives = 210/475 (44%), Gaps = 18/475 (3%) Frame = +2 Query: 527 VLVSAHTSAGKTAIAEYAI-AMSFRDKQRVIYTSPLKALSNQKYRELSQEFS---DVGLM 694 +L+++ T +GKT IAE I + ++ + IY +PL+AL+N+KY S V + Sbjct: 42 LLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWESIGFKVAMT 101 Query: 695 TGDVTLQP----NATCLVMTTEILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEE 862 +GD N ++ T E L ++ + + E + + DE+HY+ D ERG V E Sbjct: 102 SGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPDWLNEANYFVLDELHYLNDPERGPV-VE 160 Query: 863 SIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYV-FPIGGSG 1039 S+ ++ LSAT+SN + A+W L +P V T++RP PL V +P Sbjct: 161 SVTIRAKRRNLLALSATISNYKQIAKW---LGAEP---VATNWRPVPLMEGVMYPERKKK 214 Query: 1040 LYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIV 1219 Y ++ FR++ RK G A I+ Sbjct: 215 EYTIL-----FRDNT----------------ARKVHGDDA------------------II 235 Query: 1220 KMIMD--RKFQPVIIFSFSRRECEHHAMSMSK-LDFNTQEEKDNIEQVFRSAIFCLSEED 1390 +D K V++F SR+ E A+ ++ ++F + +EK I ++ + E+ Sbjct: 236 AYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEK-AISEILKQLD---DIEE 291 Query: 1391 RGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKT 1570 G EL+ L+ +G+A HH+G F++ +K + AT T A G+N+PA+T Sbjct: 292 GGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTLAAGVNLPART 351 Query: 1571 VVFTSVKKWDGDSNRY---IASGEYIQMSXXXXXXXXXXXXICVIMIDEKMEMS-VIKDM 1738 V+ + +++ Y I EY QMS +I++ +K ++ V K Sbjct: 352 VIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVRDKEDVDRVFKKY 411 Query: 1739 VLGKPAPLISTF--RLSYYTILNLLSRAEGQFTAEHVIRNSFHQFQYEKALPEVV 1897 +L P+ S ++YT L + AEG + + + F YE L + V Sbjct: 412 ILSDVEPIESKLGSERAFYTFLLGILSAEGSLSEKQL-----EAFAYESLLAKSV 461
>Q974S1:HELS_SULTO Putative ski2-type helicase - Sulfolobus tokodaii| Length = 704 Score = 115 bits (288), Expect = 1e-24 Identities = 125/495 (25%), Positives = 212/495 (42%), Gaps = 19/495 (3%) Frame = +2 Query: 476 LDPFQSISIAC-LERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQ-RVIYTSPLKALSNQ 649 L+P QS +I L + +LV++ T++GKT IAE + K + IY +PL+AL+N+ Sbjct: 27 LNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNE 86 Query: 650 KYRELSQEFSDVGLMTG--------DVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWV 805 KY +++ +G+ TG D N +V T E L ++ ++ + EV + Sbjct: 87 KYNTF-KDWETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSLWRHKAKWLNEVSYF 145 Query: 806 IFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYT 985 + DE HY+ D ERG E + ++ LSAT+SN E A W+ +V T Sbjct: 146 VLDEFHYLNDPERGPTVESVAIRAKKRGIVLGLSATISNGKEIANWL------NAELVAT 199 Query: 986 DFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPKASG 1165 ++RP PL+ + G +V +N RK G A Sbjct: 200 NWRPVPLKEGIIYPEKKGFVVVYKDN----------------------TSRKVYGDDA-- 235 Query: 1166 RIAKGGNASGTSDIYRIVKMIMD--RKFQPVIIFSFSRRECEHHAMSMSK-LDFNTQEEK 1336 I+ +D K V++F SR+ E+ A + + ++F E+K Sbjct: 236 ----------------IIAYTLDIVSKGGQVLVFRSSRKLAENTARKIVQYMNFVKLEDK 279 Query: 1337 DNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVK 1516 +E A ED G E + L+ RG+A HH+G F++ ++K Sbjct: 280 KLLE----IARKIKEVEDAGSNEKEDLYNLVLRGVAYHHAGLSKGLRDIIESSFRDRILK 335 Query: 1517 ALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRY---IASGEYIQMSXXXXXXXXXXXXI 1687 + AT T A G+N+PA+ VV + +++ Y I +Y QMS Sbjct: 336 VIVATPTLAAGVNLPARAVVIGDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENGE 395 Query: 1688 CVIMIDEKMEMSVIKDMVLGKPAPLIST---FRLSYYTILNLLSRAEGQFTAEHVIRNSF 1858 V+++ K E + + L I + ++Y+ L + +EG+ T E ++ Sbjct: 396 AVVVVRNKREAEKVYERYLMSDVEPIESKLGSESAFYSFLISIIASEGEKTTEELM---- 451 Query: 1859 HQFQYEKALPEVVQK 1903 ++ E LP+ + K Sbjct: 452 -EYVKETLLPKELAK 465
>O73946:HELS_PYRFU Putative ski2-type helicase - Pyrococcus furiosus| Length = 720 Score = 114 bits (285), Expect = 3e-24 Identities = 133/531 (25%), Positives = 223/531 (41%), Gaps = 20/531 (3%) Frame = +2 Query: 392 DLSKDEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIA 571 +L DE + TL YP Q + +S LE ++ L+S T++GKT IA Sbjct: 5 ELRVDERIKSTLKERGIES----FYPPQAEALKS---GILE-GKNALISIPTASGKTLIA 56 Query: 572 EYAIAMSFRDKQ-RVIYTSPLKALSNQKYRELSQEFSDVGLM----TGDVTLQPN----A 724 E A+ + + +Y PLKAL+ +K++E Q++ +GL TGD + Sbjct: 57 EIAMVHRILTQGGKAVYIVPLKALAEEKFQEF-QDWEKIGLRVAMATGDYDSKDEWLGKY 115 Query: 725 TCLVMTTEILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFL 904 ++ T E ++L GS IK+V ++ DEIH + R+RG E + + +++ L Sbjct: 116 DIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGL 175 Query: 905 SATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDN 1084 SAT+ N E AEW+ ++ +D+RP L+ VF G V E+G D Sbjct: 176 SATIGNPEELAEWL------NAELIVSDWRPVKLRRGVFYQG-----FVTWEDGSI--DR 222 Query: 1085 FLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFS 1264 F ++ +Y + RK + +IF Sbjct: 223 FSSWEEL---------------------------------VYDAI-----RKKKGALIFV 244 Query: 1265 FSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIA 1444 RR+ E A+ +SK + K + + A+ L++ P E + ++ G+A Sbjct: 245 NMRRKAERVALELSK------KVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 Query: 1445 VHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIA 1624 HH+G F++G++KA+ AT T + G+N PA V+ + ++ I Sbjct: 299 FHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIP 358 Query: 1625 SGEYIQMSXXXXXXXXXXXXICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILN- 1801 E QM +I+ V+ + GKP L S +LS + L Sbjct: 359 IIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFS--QLSNESNLRS 416 Query: 1802 ---LLSRAEGQFTAEHVIR---NSFHQFQYEK--ALPEVVQKIT--KLENE 1924 L G T E +++ N+F+ +Q + +L E ++ I LENE Sbjct: 417 QVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENE 467
>Q9V0A9:HELS_PYRAB Putative ski2-type helicase - Pyrococcus abyssi| Length = 715 Score = 114 bits (284), Expect = 4e-24 Identities = 114/435 (26%), Positives = 188/435 (43%), Gaps = 9/435 (2%) Frame = +2 Query: 521 ESVLVSAHTSAGKTAIAEYAIAMSFRDKQ-RVIYTSPLKALSNQKYRELSQEFSDVGLM- 694 E++LV+ T++GKT IAE AIA ++ + +Y PLKAL+ +K+RE +++ +GL Sbjct: 40 ENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEEKFREF-KDWERLGLKV 98 Query: 695 ---TGDVTLQPN----ATCLVMTTEILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVV 853 TGD + ++ T E ++L GS I++V ++ DEIH + R+RG Sbjct: 99 AMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIRDVKMLVIDEIHLIGSRDRGAT 158 Query: 854 WEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGG 1033 E I + +++ LSAT+ N E AEW+ ++ +D+RP L+ VF G Sbjct: 159 LEFIITQMLGRAQIIGLSATIGNPEELAEWL------NAKLIRSDWRPVKLRKGVFYQG- 211 Query: 1034 SGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYR 1213 ++ ++ G R +++ +L +Y Sbjct: 212 ---FVFWEDGGSERYNSWEEL------------------------------------VYD 232 Query: 1214 IVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSAIFCLSEEDR 1393 VK K + ++F RR+ E A+ ++K N + K+ E R L E Sbjct: 233 AVK-----KGKGALVFVNMRRKAEKTALELAKKVKNYLDRKELRE--LRELAESLEEN-- 283 Query: 1394 GLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTV 1573 P E + L G+A HH+G F++GL+K + AT T + G+N PA V Sbjct: 284 --PTNEKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRV 341 Query: 1574 VFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXXXXXXICVIMIDEKMEMSVIKDMVLGKP 1753 + ++ I E QM +I+ + VI + GKP Sbjct: 342 IIRDTWRYSEFGMERIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEEPSLVIDHYIKGKP 401 Query: 1754 APLISTFRLSYYTIL 1798 L S +LS +IL Sbjct: 402 EKLFS--QLSNESIL 414
>Q8TL39:HELS_METAC Putative ski2-type helicase - Methanosarcina acetivorans| Length = 730 Score = 112 bits (279), Expect = 1e-23 Identities = 102/418 (24%), Positives = 185/418 (44%), Gaps = 16/418 (3%) Frame = +2 Query: 443 NGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYT 622 N + + YP Q + + L +++L + T++GKT +AE A+ S + +Y Sbjct: 18 NSGIPELYPPQAEAVEK----GLLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGKALYI 73 Query: 623 SPLKALSNQKYRELSQEFSD----VGLMTGDVTLQPNA----TCLVMTTEILRAMLYRGS 778 PL+AL+++K+R Q+FS+ VG+ TGD + +V T+E ++L + Sbjct: 74 VPLRALASEKFRRF-QDFSELGIRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLRNET 132 Query: 779 EVIKEVGWVIFDEIHYMKDRERGVVWEESIVFL---PPAIKMVFLSATMSNATEFAEWIC 949 ++E+ V+ DE+H + +RG E ++ L P +++ LSAT+ NA E A W+ Sbjct: 133 AWMQEISVVVVDEVHLIDSADRGPTLEVTLAKLRKMNPFCQILALSATVGNADELAAWL- 191 Query: 950 NLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQP 1129 +V +++RPT L VF F F K ++ +QP++ Sbjct: 192 -----DAELVLSEWRPTDLMEGVF----------------FDGTFFCKDKEKLIEQPTKD 230 Query: 1130 DGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMD--RKFQPVIIFSFSRRECEHHAMSM 1303 + + +++D R+ ++F SR+ C A Sbjct: 231 EA---------------------------INLVLDTLREGGQCLVFESSRKNCMGFAKKA 263 Query: 1304 SKLDFNT--QEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXX 1477 + T E+K+ + + + E+ ++ ++ G A HH+G Sbjct: 264 TSAVKKTLSAEDKEKLAGIADEIL-----ENSETDTASVLASCVRAGTAFHHAGLTSPLR 318 Query: 1478 XXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSN-RYIASGEYIQMS 1648 F+EG VK + +T T A GLN+PA+ V+ S +++ DS + I EY QM+ Sbjct: 319 ELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMA 376
>O59025:HELS_PYRHO Putative ski2-type helicase - Pyrococcus horikoshii| Length = 715 Score = 111 bits (277), Expect = 2e-23 Identities = 115/460 (25%), Positives = 202/460 (43%), Gaps = 11/460 (2%) Frame = +2 Query: 452 MAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSF-RDKQRVIYTSP 628 +++ YP Q + S + + E+ L++ T++GKT IAE AI ++ + +Y P Sbjct: 21 ISELYPPQAEALTSGIL----KGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVP 76 Query: 629 LKALSNQKYRELSQEFSDVGLM----TGDVTLQPN----ATCLVMTTEILRAMLYRGSEV 784 LKAL+ +K++E +++ ++GL TGD + ++ T E ++L GS Sbjct: 77 LKALAEEKFKEF-KDWEELGLKVAMATGDYDSKDEWLGGYDIIIATAEKFDSLLRHGSSW 135 Query: 785 IKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQ 964 I+ V ++ DEIH + R+RG E I + +++ LSAT+ N E AEW+ Sbjct: 136 IRNVKVLVVDEIHLIGSRDRGATLEFIITQMLNRAQIIGLSATIGNPEELAEWL------ 189 Query: 965 PCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKG 1144 ++ +D+RP L+ VF G V E+G+ + N Sbjct: 190 NAKLIKSDWRPVKLRRGVFYQG-----FVFWEDGKTEKFN-------------------- 224 Query: 1145 GGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSK--LDF 1318 S +Y +K + + ++F RR+ E A+ +SK +F Sbjct: 225 ---------------SWEELVYDAIK-----RSKGSLVFVNMRRKAEKTALELSKKIRNF 264 Query: 1319 NTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXF 1498 T++E ++++ S EE+ P E + L+ G+A HH+G F Sbjct: 265 LTKKELRELKELAESL-----EEN---PTNEKLAKALQGGVAFHHAGLGREERVLVEENF 316 Query: 1499 QEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXXXXXXXXX 1678 ++GL+K + AT T + G+N PA V+ ++ I E QM Sbjct: 317 KKGLIKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRAGRPKYDE 376 Query: 1679 XXICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTIL 1798 +I+ + +V++ + GKP L S +LS +IL Sbjct: 377 VGEAIIVSTTEEPSTVMERYIKGKPEKLFS--QLSNESIL 414
>Q8PZR7:HELS_METMA Putative ski2-type helicase - Methanosarcina mazei (Methanosarcina| frisia) Length = 730 Score = 108 bits (269), Expect = 2e-22 Identities = 106/419 (25%), Positives = 188/419 (44%), Gaps = 17/419 (4%) Frame = +2 Query: 443 NGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYT 622 N + + YP Q + + L +++L + T++GKT +AE A+ S + + +Y Sbjct: 18 NSGILELYPPQAEAVEK----GLLEGKNLLAAIPTASGKTLLAELAMLKSVLNGGKALYI 73 Query: 623 SPLKALSNQKYRELSQEFS----DVGLMTGDVTLQPNA----TCLVMTTEILRAMLYRGS 778 PL+AL+++K+R QEFS VG+ TGD + +V T+E ++L + Sbjct: 74 VPLRALASEKFRRF-QEFSVLGMRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLRNET 132 Query: 779 EVIKEVGWVIFDEIHYMKDRERGVVWEESIVFL---PPAIKMVFLSATMSNATEFAEWIC 949 ++E+ V+ DE+H + +RG E ++ L P+ +++ LSAT+ NA E A W+ Sbjct: 133 AWMQEISVVVADEVHLIDSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADELAAWL- 191 Query: 950 NLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQP 1129 +V +++RPT L VF NG F + K +P Sbjct: 192 -----DAELVLSEWRPTDLMEGVF------------YNGIF-----------YCKDKEKP 223 Query: 1130 DGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMD--RKFQPVIIFSFSRREC---EHHA 1294 G+ T D V +++D ++ ++F SR+ C A Sbjct: 224 VGQP------------------TKD--EAVNLVLDTIKEGGQCLVFESSRKNCMGFAKKA 263 Query: 1295 MSMSKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXX 1474 +S K + E+++ + + I E+ ++ ++ G A HH+G Sbjct: 264 VSAVKKTL-SNEDRETLAGIADEII-----ENSETDVSSVLATCVRSGTAFHHAGLTTPL 317 Query: 1475 XXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSN-RYIASGEYIQMS 1648 F+EG +K + +T T A GLN+PA+ V+ S +++ DS + I EY QM+ Sbjct: 318 RELVENGFREGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMA 376
>Q9YFQ8:HELS_AERPE Putative ski2-type helicase - Aeropyrum pernix| Length = 735 Score = 106 bits (264), Expect = 8e-22 Identities = 106/391 (27%), Positives = 168/391 (42%), Gaps = 9/391 (2%) Frame = +2 Query: 503 ACLERNESVLVSAHTSAGKTAIAEYAIAMSF-RDKQRVIYTSPLKALSNQKYRE---LSQ 670 A +E+ E+++V+A T +GKT IA AI S R R Y PLK+++ +KY LS+ Sbjct: 38 AGVEKGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFSILSR 97 Query: 671 EFSDVGLMTGDVTL-QPNATCLVMTTEILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERG 847 + + GD P A ++ T E ++L + + V +I DEIH + D +RG Sbjct: 98 MGLKLKISVGDFREGPPEAPVVIATYEKFDSLLRVSPSLARNVSVLIVDEIHSVSDPKRG 157 Query: 848 VVWEESIVFLPPA---IKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYV 1018 + E + + + ++V LSAT+ NA E AEWI +V + +RP PL+ YV Sbjct: 158 PILESIVSRMLASAGEAQLVGLSATVPNAGEIAEWIGG------KIVESSWRPVPLREYV 211 Query: 1019 FPIGGSGLYLVVDENGQFRE-DNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASG 1195 F Y + G RE L D A+ I GG A Sbjct: 212 FK-----EYKLYSPTGGLREVPRVYGLYDL---------------DLAAEAIEDGGQA-- 249 Query: 1196 TSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSAIFC 1375 ++F++SRR A++++K + + + + Sbjct: 250 -------------------LVFTYSRR----RAVTLAKRAAKRLGRRLSSREARVYSAEA 286 Query: 1376 LSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLN 1555 E E + L+ GIA HH+G F+ G VK +++T T A G+N Sbjct: 287 SRAEGAPRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGVN 346 Query: 1556 MPAKTVVFTSVKKWDGDSNRYIASGEYIQMS 1648 +PA+ VV S +++ I EY QM+ Sbjct: 347 LPARRVVIDSYYRYEAGFREPIRVAEYKQMA 377
>O26901:HELS_METTH Putative ski2-type helicase - Methanobacterium thermoautotrophicum| Length = 690 Score = 104 bits (260), Expect = 2e-21 Identities = 106/418 (25%), Positives = 176/418 (42%), Gaps = 13/418 (3%) Frame = +2 Query: 434 PAFNGEMAKTYPF--QLDPFQ--SISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRD 601 P + YP +L+P Q +I LE ++ +++ T++GKT + A + + Sbjct: 6 PEMRQILGDCYPHIRELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVME 65 Query: 602 KQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCL-VMTTEILRAMLYRGS 778 RVIYT PL ++ N+K +E ++ + G+ G P + + VM E ++ Sbjct: 66 GGRVIYTVPLLSIQNEKIKEF-RKLEEHGIRVGK---DPRTSDIAVMVFESFDSLTRFSW 121 Query: 779 EVIKEVGWVIFDEIHYMKDRERGVVWEESIV---FLPPAIKMVFLSATMSNATEFAEWIC 949 +++EV +I DE H + + RG V E +I L P++++V LSAT+SN E A W+ Sbjct: 122 NILREVDLLIVDEFHMIGEYTRGPVIESAITRARTLNPSVRIVALSATLSNMDEIAGWL- 180 Query: 950 NLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQP 1129 VV D+RP PL V G+ + + D LK+ + + SQ Sbjct: 181 -----DARVVEHDYRPVPLHREVLDTEMFGV--------REKNDVVLKVLERSLEDGSQ- 226 Query: 1130 DGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSK 1309 + F +RR E A ++ Sbjct: 227 ----------------------------------------TLAFVSTRRFTESLASHLA- 245 Query: 1310 LDFNTQEEKDNIEQVFRSAIFCLSE--EDRGLPAIELMLPL---LKRGIAVHHSGXXXXX 1474 D + + D++ + FR + E + RG P L L L+ GIA HH+G Sbjct: 246 -DKISGKIPDDMVESFREVAGKVLEVPKSRGSPPTSTCLKLAECLEAGIAFHHAGLFNRQ 304 Query: 1475 XXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMS 1648 F++G + + AT + G+N+P++TVV +W R I +Y QMS Sbjct: 305 REIIEDEFRDGNILMITATPSLMYGVNLPSRTVVIRDYTRWTSQGPRRIPVFDYEQMS 362
>Q5UYM9:HELS_HALMA Putative ski2-type helicase - Haloarcula marismortui (Halobacterium| marismortui) Length = 799 Score = 98.2 bits (243), Expect = 2e-19 Identities = 100/396 (25%), Positives = 172/396 (43%), Gaps = 17/396 (4%) Frame = +2 Query: 473 QLDPFQSISI-ACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQ 649 +L P Q+ ++ A + E+++ S T++GKT IAE A+ S + +Y PL+AL+++ Sbjct: 24 ELYPPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARGGKALYIVPLRALASE 83 Query: 650 K---YRELSQEFSDVGLMTGDVTLQ----PNATCLVMTTEILRAMLYRGSEVIKEVGWVI 808 K + E Q D+G+ TG+ + + +V T+E + +++ + I+++ V+ Sbjct: 84 KQADFEEFEQYGLDIGVSTGNYESEGGWLADKDIVVATSEKVDSLVRNDAPWIEDLTCVV 143 Query: 809 FDEIHYMKDRERGVVWEESIV---FLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVV 979 DE+H + D ERG E ++ L P ++ V LSAT+ NA A W+ +V Sbjct: 144 TDEVHLVDDGERGPTLEVTLAKLRRLNPDLQTVALSATIGNAEALATWL------DAGLV 197 Query: 980 YTDFRPTPLQ---HYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGG 1150 +D+RP LQ HY G L+L + N K + + DG Sbjct: 198 DSDWRPIDLQKGVHY-----GQALHLEDGSQQRLSVQNNEKQTAAIVRDTLEDDG----- 247 Query: 1151 PKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQE 1330 ++F SRR E A ++ NT Sbjct: 248 --------------------------------STLVFVNSRRNAEAAAGRLA----NTVR 271 Query: 1331 EKDNIEQVFRSAIFCLSEEDRGLPAIEL---MLPLLKRGIAVHHSGXXXXXXXXXXXXFQ 1501 + E+ R + ++EE R + E + + G A HH+G F+ Sbjct: 272 PHLSTEE--RDQLADIAEEIRDVSDTETSDDLADAVADGAAFHHAGLSRGHRELVEDAFR 329 Query: 1502 EGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDS 1609 + LVK + AT T A G+N P++ VV +++DG + Sbjct: 330 DRLVKVVCATPTLAAGVNTPSRRVVVRDWRRYDGSA 365
>Q5JGV6:HELS_PYRKO Putative ski2-type helicase - Pyrococcus kodakaraensis (Thermococcus| kodakaraensis) Length = 1125 Score = 95.5 bits (236), Expect = 1e-18 Identities = 94/372 (25%), Positives = 159/372 (42%), Gaps = 11/372 (2%) Frame = +2 Query: 464 YPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQ-RVIYTSPLKAL 640 YP Q + +S LE ++++++ T++GKT ++E + + + +Y PLKAL Sbjct: 25 YPPQAEALKS---GVLE-GKNLVLAIPTASGKTLVSEIVMVNKLLSEGGKAVYLVPLKAL 80 Query: 641 SNQKYRELSQEFSDVGLMTGDVTLQPNAT--------CLVMTTEILRAMLYRGSEVIKEV 796 + +KYRE +E+ +GL T ++T +V T E ++L G+ IK+V Sbjct: 81 AEEKYREF-KEWEVLGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDSLLRHGASWIKDV 139 Query: 797 GWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHV 976 V+ DE+H + +RG E + + +++ LSAT+ NA E AEW+ + Sbjct: 140 KLVVADEVHLIGSYDRGATLEMILTHMLGKAQILALSATVGNAEELAEWL------DASL 193 Query: 977 VYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPK 1156 V +D+RP L+ VF +G F ED Sbjct: 194 VVSDWRPVELRKGVFHLG-----------QLFWED------------------------- 217 Query: 1157 ASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSK--LDFNTQE 1330 G + + + + +K + ++F +RR E A+S+S T+ Sbjct: 218 --------GKIDHYPENWESLVLDAVKKGKQALVFVNTRRSAEKEAISLSSKVSKLLTKP 269 Query: 1331 EKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGL 1510 E +E++ S ED P E + LK G+A HH+G F+ GL Sbjct: 270 ETRRLEELISSI------EDN--PTTEKLKRALKGGVAFHHAGLSRAERTLIEDAFRNGL 321 Query: 1511 VKALFATETFAM 1546 +K + AT T M Sbjct: 322 IKVITATPTLCM 333
>P51979:HFM1_YEAST ATP-dependent DNA helicase MER3 - Saccharomyces cerevisiae (Baker's| yeast) Length = 1187 Score = 94.7 bits (234), Expect = 2e-18 Identities = 124/578 (21%), Positives = 233/578 (40%), Gaps = 31/578 (5%) Frame = +2 Query: 302 HEQEPLPGSTAKR------QNLARSCIHEVAVPNGYDLSKDEAVHGTLSNPAFNGEMAKT 463 H+ E P AK+ + A+ C+ +P+ + G FN ++ Sbjct: 95 HDLEQTPDEEAKKPKKVTIRKSAKKCLSTTILPDSF--------RGVFKFTEFNKMQSEA 146 Query: 464 YPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRD------KQRVIYTS 625 +P + E NE+ ++S+ T +GKT + E AI ++ ++IY + Sbjct: 147 FP-----------SIYESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIA 195 Query: 626 PLKALSNQKYRELSQEFSD--VGLMTGDV----TLQPNATCLVMTT----EILRAMLYRG 775 P K+L + Y+ F + VG++T D T + +++TT ++L Sbjct: 196 PTKSLCYEMYKNWFPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDY 255 Query: 776 SEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPA---IKMVFLSATMSNATEFAEWI 946 S + + V V+ DEIH +K++ RG E + + I+ V LSAT+ N + A W+ Sbjct: 256 SRLFELVKLVLVDEIHTIKEK-RGASLEVILTRMNTMCQNIRFVALSATVPNIEDLALWL 314 Query: 947 CNLHKQPCHVVYTD--FRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQP 1120 ++ P +++ D +R L +V+ ++ F K Sbjct: 315 KTNNELPANILSFDESYRQVQLTKFVYGYS-------------------FNCKNDFQK-- 353 Query: 1121 SQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMS 1300 +A S + I++ D + PV+IF C A + Sbjct: 354 ---------------------DAIYNSKLIEIIEKHADNR--PVLIF------CPTRAST 384 Query: 1301 MSKLDFNTQEEKDNIEQVFRSAIFCLSEED-RGLPAIELMLPLLKRGIAVHHSGXXXXXX 1477 +S F + + IF S++ P+ +++ +++GIA HH+G Sbjct: 385 ISTAKF-----------LLNNHIFSKSKKRCNHNPSDKILNECMQQGIAFHHAGISLEDR 433 Query: 1478 XXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSXXX 1657 F G + L +T T A+G+N+PA V+ K W+ + + + +QM Sbjct: 434 TAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLDVLQMIGRA 493 Query: 1658 XXXXXXXXXICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQF--- 1828 VIM D KM+ + ++++ G L S+ L+ L + E + Sbjct: 494 GRPQFETHGCAVIMTDSKMKQT-YENLIHGTDV-LESSLHLNLIEHLAAETSLETVYSIE 551 Query: 1829 TAEHVIRNSFHQFQYEKALPEVVQKITKLENEATLLDS 1942 TA + +RN+F ++ K P Q++ + + ++ DS Sbjct: 552 TAVNWLRNTFFYVRFGKN-PAAYQEVNRYVSFHSVEDS 588
>Q9HMV6:HELS_HALSA Putative ski2-type helicase - Halobacterium salinarium (Halobacterium| halobium) Length = 783 Score = 87.0 bits (214), Expect = 5e-16 Identities = 101/414 (24%), Positives = 175/414 (42%), Gaps = 26/414 (6%) Frame = +2 Query: 440 FNGE-MAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAI---------AM 589 F GE + + YP Q + + + +++ S T++GKT IA+ A+ + Sbjct: 17 FEGEGVEELYPPQAEAVER----GVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSP 72 Query: 590 SFRDKQRVIYTSPLKALSNQKYRELS--QEFS-DVGLMTG----DVTLQPNATCLVMTTE 748 +F +Y PL+AL+ +K +E + F VG+ TG D + +V T+E Sbjct: 73 TFSGDGTALYIVPLRALAGEKAQEFEAFERFGLSVGVSTGNYERDGARLADNDIVVATSE 132 Query: 749 ILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAI---KMVFLSATMS 919 + +++ G+ I ++ V+ DE+H + D RG E ++ L + ++V LSAT+ Sbjct: 133 KVDSLVRNGAGWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVG 192 Query: 920 NATEFAEWICNLHKQPCHVVYTDFRPTPLQ---HYVFPIGGSGLYLVVDENGQFREDNFL 1090 NA E A W+ +V +D+RP L+ HY G L D+ Sbjct: 193 NAGELAAWL------DAELVDSDWRPIELRTGVHY-------GQSLHYDDG--------- 230 Query: 1091 KLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFS 1270 +Q + G G + + +A G++ ++F S Sbjct: 231 ----------TQAELSVGSGSQTAAVVADTLADDGST-----------------LVFVNS 263 Query: 1271 RRECEHHAMSMSKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIEL---MLPLLKRGI 1441 RR E A ++ + N + R + ++ E RG+ E + + G Sbjct: 264 RRNAEASARRLADVTGNA------LSSAERERLADIAAEIRGVSDTETSDELADAVASGA 317 Query: 1442 AVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDG 1603 A HH+G F++ LVKA+ AT T A G+N PA+ VV +++DG Sbjct: 318 AFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDG 371
>Q58524:HELS_METJA Putative ski2-type helicase - Methanococcus jannaschii| Length = 1195 Score = 86.3 bits (212), Expect = 8e-16 Identities = 86/366 (23%), Positives = 155/366 (42%), Gaps = 17/366 (4%) Frame = +2 Query: 509 LERNESVLVSAHTSAGKTAIAEYAIAMSFRD------KQRVIYTSPLKALSNQKYRELSQ 670 L++N++ L+S T++GKT I E A+ D ++ I+ PLKAL+++KY E Sbjct: 29 LDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKALASEKYEEFKS 88 Query: 671 EFSDVG----LMTGDVTLQPNAT---CLVMTTEILRAMLYRGSEVIKEVGWVIFDEIHYM 829 ++ G L GD + + ++ T E L ++ + I +V V+ DEIH + Sbjct: 89 KYERYGLRIALSIGDYDEDEDLSKYHLIITTAEKLDSLWRHKIDWINDVSVVVVDEIHLI 148 Query: 830 KDRERGVVWEESIVFLPP-AIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPL 1006 D RG E + L ++++ LSAT+ N E AEW+ ++ D+RP L Sbjct: 149 NDETRGGTLEILLTKLKEFNVQIIGLSATIGNPDELAEWL------NAELIVDDWRPVEL 202 Query: 1007 QHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGN 1186 + ++ + + NG+ RE +K D Sbjct: 203 KKGIYK--NEAIEFI---NGEIRE---IKAVD---------------------------- 226 Query: 1187 ASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSA 1366 +DIY +V + ++ ++F ++R + A ++ F T+EEK ++++ Sbjct: 227 ---NNDIYNLVVDCV-KEGGCCLVFCNTKRNAVNEAKKLNLKKFLTEEEKIRLKEIAEEI 282 Query: 1367 IFCLSEEDRGLPAIELMLPL---LKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATET 1537 + L P E+ L + G A HH+G F++ L+K + T T Sbjct: 283 LSILE------PPTEMCKTLAECILNGSAFHHAGLTYQHRKIVEDAFRKRLIKVICCTPT 336 Query: 1538 FAMGLN 1555 + N Sbjct: 337 LCLNAN 342
>O60072:MUG81_SCHPO Putative helicase mug81 - Schizosaccharomyces pombe (Fission yeast)| Length = 1935 Score = 80.5 bits (197), Expect = 5e-14 Identities = 90/409 (22%), Positives = 170/409 (41%), Gaps = 38/409 (9%) Frame = +2 Query: 518 NESVLVSAHTSAGKTAIAEYAIAMSF-------------------RDKQRVIYTSPLKAL 640 NE++L+ A T AGKT +A A+ + RD +++Y +P+KAL Sbjct: 293 NENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKAL 352 Query: 641 SNQKYRELSQEFSDVGL----MTGDVTLQPN---ATCLVMTT----EILRAMLYRGSEVI 787 + + ++ + + +GL +TGD+ L T +++TT +++ +++ Sbjct: 353 AAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLA 412 Query: 788 KEVGWVIFDEIHYMKDRERGVVWEESIV-------FLPPAIKMVFLSATMSNATEFAEWI 946 ++V VI DE+H + D ERG V E + I++V LSAT+ N + A+++ Sbjct: 413 EKVRLVIIDEVHMLHD-ERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFL 471 Query: 947 CNLHKQPCHVVYTDFRPTPL-QHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPS 1123 + + FRP P+ QH++ Sbjct: 472 GVNRYKGLFYFSSAFRPCPIEQHFI----------------------------------- 496 Query: 1124 QPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSM 1303 G K S +I D +++K+I + V+IF SR+E + A + Sbjct: 497 --------GAKGSPKIVNSNIDEACFD--KVLKLIQEG--HQVMIFVHSRKETINSAKKL 544 Query: 1304 SKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXX 1483 + F+ + E D ++ + + L++ D + + L K + +H++G Sbjct: 545 REQFFH-EGEADLLDN-SQHEKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHL 602 Query: 1484 XXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASG 1630 F G++K L T T A G+N+PA V+ + +D ++ G Sbjct: 603 TERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLG 651 Score = 70.5 bits (171), Expect = 5e-11 Identities = 101/431 (23%), Positives = 171/431 (39%), Gaps = 33/431 (7%) Frame = +2 Query: 425 LSNPAFNGEMAKTYPF----QLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAI--A 586 L +P G AK + F Q F +I + ++ V A T +GKT AE A A Sbjct: 1119 LHDPVLEGICAKRFSFFNAVQTQFFHTI----YHTDTNIFVGAPTGSGKTMAAELATWRA 1174 Query: 587 MSFRDKQRVIYTSPLKALSNQKYRELSQEFSD-VGL----MTG----DVTLQPNATCLVM 739 + K +V+Y +P+KAL ++ ++ + +G+ +TG DV NA ++ Sbjct: 1175 LHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPDVKAVTNANIIIT 1234 Query: 740 TTE----ILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFL-------PPA 886 T E I R+ ++ + +++V +I DEIH + +RG V E + + Sbjct: 1235 TPEKWDGITRS--WKSRKYVQDVSLIILDEIHLL-GSDRGPVLEMIVSRMNYVASQTNKK 1291 Query: 887 IKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENG 1066 ++++ LS ++NA + A W+ N+ + ++ RP PL+ Y+ G Sbjct: 1292 VRVLGLSTAVANANDLANWL-NIRDGLFNFRHS-VRPVPLEIYIDGFPGRAYC------P 1343 Query: 1067 QFREDNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQ 1246 + N Q P+QP Sbjct: 1344 RMMSMNKPAFQAIKTHSPTQP--------------------------------------- 1364 Query: 1247 PVIIFSFSRRECEHHA---MSMSKLDFNTQE----EKDNIEQVFRSAIFCLSEEDRGLPA 1405 V+IF SRR+ A ++ L+ N + +++ +E + ED+ L Sbjct: 1365 -VLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLYMDEEELEMIVSEV------EDKSL-- 1415 Query: 1406 IELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTS 1585 +L LP GIA+HH+G F V+ L AT T A G+N PA V+ Sbjct: 1416 -KLALPF---GIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKG 1471 Query: 1586 VKKWDGDSNRY 1618 + +D Y Sbjct: 1472 TEYYDAKIGGY 1482
>P53327:SLH1_YEAST Antiviral helicase SLH1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 1967 Score = 78.6 bits (192), Expect = 2e-13 Identities = 105/463 (22%), Positives = 192/463 (41%), Gaps = 42/463 (9%) Frame = +2 Query: 368 EVAVPNGYDLSKDEAVHGTLSNPAFNGEMAKT-YPFQ-LDPFQSISI-ACLERNESVLVS 538 E+ +P S ++ L + KT +P++ L+ QS+ + NE++L+ Sbjct: 250 EIIIPAADQASNKNYLYTKLLKISDLDHFCKTVFPYETLNQIQSLVYPVAYKTNENMLIC 309 Query: 539 AHTSAGKTAIAEYAIAMSFR---------------DKQRVIYTSPLKALSNQKYRELSQE 673 A T AGKT IA I + + D +VIY +PLKAL+ + + S++ Sbjct: 310 APTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEIVDKFSKK 369 Query: 674 FSDVGL----MTGDVTL---QPNATCLVMTT----EILRAMLYRGSEVIKEVGWVIFDEI 820 + + +TGD+ L + AT +++TT +++ ++++ +V +I DE+ Sbjct: 370 LAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLLIIDEV 429 Query: 821 HYMKDRERGVVWE-------ESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVV 979 H + + +RG V E + I+++ LSAT+ N + A+++ +++Q + Sbjct: 430 HLLHE-DRGPVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFL-GVNRQ-IGMF 486 Query: 980 YTD--FRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGGP 1153 Y D FRP PL+ + G K G Sbjct: 487 YFDQSFRPKPLEQQLLGCRG-----------------------------------KAGSR 511 Query: 1154 KASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQE- 1330 ++ I K Y + ++ R +Q V++F SR+E A + KL + E Sbjct: 512 QSKENIDKVA--------YDKLSEMIQRGYQ-VMVFVHSRKETVKSARNFIKLAESNHEV 562 Query: 1331 ---EKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQ 1501 D IE+ S + + + M + + G +HH+G F+ Sbjct: 563 DLFAPDPIEKDKYSRSLVKNRD-------KDMKEIFQFGFGIHHAGMARSDRNLTEKMFK 615 Query: 1502 EGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASG 1630 +G +K L T T A G+N+PA V+ + +D +I G Sbjct: 616 DGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLG 658 Score = 76.3 bits (186), Expect = 9e-13 Identities = 93/413 (22%), Positives = 169/413 (40%), Gaps = 28/413 (6%) Frame = +2 Query: 464 YPFQ-LDPFQSISIACL-ERNESVLVSAHTSAGKTAIAEYAIAMSFR--DKQRVIYTSPL 631 YPF+ +P Q+++ L NE+ V + T +GKT +AE AI +F+ ++++Y +P+ Sbjct: 1135 YPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPM 1194 Query: 632 KALSNQKYRELSQEFSDVG-----LMTGDVTLQP----NATCLVMTTEILRAML--YRGS 778 KAL ++ + ++ + V +TGD P +AT ++ T E + ++ Sbjct: 1195 KALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTR 1254 Query: 779 EVIKEVGWVIFDEIHYMKDRERGVVWEESIVFL-------PPAIKMVFLSATMSNATEFA 937 + +++V +I DEIH + +RG + E + + ++++ +S +SNA + A Sbjct: 1255 KFVQDVSLIIMDEIHLLAS-DRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMA 1313 Query: 938 EWICNLHKQPCHVVYTDFRPTPLQHYV--FPIGGSGLYLVVDENGQFREDN--FLKLQDT 1105 W+ + + + RP PL+ Y+ FP DN F L T Sbjct: 1314 GWL-GVKDHGLYNFPSSVRPVPLKMYIDGFP------------------DNLAFCPLMKT 1354 Query: 1106 FAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECE 1285 K ++ +K K P +IF SRR+ Sbjct: 1355 MNK-----------------------------PVFMAIKQHSPDK--PALIFVASRRQTR 1383 Query: 1286 HHAMSMSKLDFNTQEEKD--NIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSG 1459 A+ + L + NI+ + D + + L+ GI +HH+G Sbjct: 1384 LTALDLIHLCGMEDNPRRFLNIDDEEELQYYLSQVTD------DTLKLSLQFGIGLHHAG 1437 Query: 1460 XXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRY 1618 FQ+ ++ L AT T A G+N+PA V+ + +D Y Sbjct: 1438 LVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGY 1490
>Q9U2G0:U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase -| Caenorhabditis elegans Length = 2145 Score = 71.2 bits (173), Expect = 3e-11 Identities = 100/435 (22%), Positives = 171/435 (39%), Gaps = 34/435 (7%) Frame = +2 Query: 428 SNPAFNGEMAKTYPFQLDPFQS-ISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFR-- 598 + PAF+G + L+ QS + + L E +L+ A T AGKT +A + Sbjct: 465 AQPAFDGYKS------LNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNH 518 Query: 599 ---------DKQRVIYTSPLKALSNQKYRELSQEFS----DVGLMTGDVTLQPN----AT 727 D+ +++Y +P+K+L + S+ + VG MTGD + Sbjct: 519 LAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQ 578 Query: 728 CLVMTTEILRAMLYRGSE--VIKEVGWVIFDEIHYMKDRERGVVWEESIVFL-------P 880 +V T E + +G E + V +I DEIH + D +RG V E +V Sbjct: 579 VIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQNH 637 Query: 881 PAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTD--FRPTPLQHYVFPIGGSGLYLVV 1054 ++V LSAT+ N + A + L +P H+ + D +RP PL+ Y+ V Sbjct: 638 DECRLVGLSATLPNYQDVATF---LRVKPEHLHFFDNSYRPVPLEQQ---------YIGV 685 Query: 1055 DENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMD 1234 E + F + + + + G+ Sbjct: 686 TEKKALK--RFQAMNEVVYDKIMEHAGK-------------------------------- 711 Query: 1235 RKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFR---SAIFCLSEEDRGLPA 1405 V++F SR+E A ++ + EKD + R ++ L E Sbjct: 712 ---SQVLVFVHSRKETAKTAKAIR----DACLEKDTLSAFMREGSASTEILRTEAEQAKN 764 Query: 1406 IELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTS 1585 ++L LL G A+HH+G F + ++ LF+T T A G+N+PA TV+ Sbjct: 765 LDLK-DLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKG 823 Query: 1586 VKKWDGDSNRYIASG 1630 + ++ + R+ G Sbjct: 824 TQIYNPEKGRWTELG 838 Score = 52.8 bits (125), Expect = 1e-05 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 22/182 (12%) Frame = +2 Query: 467 PFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRD--KQRVIYTSPLKAL 640 P Q F+++ E NE+V+V A +GKTAIAE A+ F + + + +Y +P++ + Sbjct: 1324 PIQTQVFRTV----FESNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDM 1379 Query: 641 SNQKYRELSQEFS-----DVGLMTG----DVTLQPNATCLVMTTE----ILRAMLYRGSE 781 + + Y + + + L+TG D+ L ++ T E I R R S Sbjct: 1380 ATKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKS- 1438 Query: 782 VIKEVGWVIFDEIHYMKDRERGVVWEESI-------VFLPPAIKMVFLSATMSNATEFAE 940 ++ V I D++H M G V+E L A+++V LS++++NA + Sbjct: 1439 -VQNVKLFIADDLH-MIGASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGM 1496 Query: 941 WI 946 W+ Sbjct: 1497 WL 1498
>Q9UT24:BRR2_SCHPO Pre-mRNA-splicing factor brr2 - Schizosaccharomyces pombe (Fission| yeast) Length = 2176 Score = 70.9 bits (172), Expect = 4e-11 Identities = 107/461 (23%), Positives = 184/461 (39%), Gaps = 31/461 (6%) Frame = +2 Query: 287 SAVVLHEQEPLPGSTAKRQNLARSCIHEVAVPNGYDLSKDEAVHGTLSNPAFNGEMAKTY 466 S ++ ++ LP + +R IH V PN L DE + P ++ + A Sbjct: 459 SRLMSNKAVKLPEGSFRRTGKGYEEIH-VPAPNKAVLGADERLVKIKELPEWSHQ-AFLN 516 Query: 467 PFQLDPFQS-ISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQR----------- 610 L+ QS + +E++L+ A T AGKT +A I + R Sbjct: 517 TQSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFK 576 Query: 611 VIYTSPLKALSNQKYRELSQEFSDVGL----MTGDVTL---QPNATCLVMTTEILRAMLY 769 ++Y +PLKAL + S+ + + +TGD L Q + T +++TT ++ Sbjct: 577 IVYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIIT 636 Query: 770 RGSEVIKEVGWV---IFDEIHYMKDRERGVVWEESIVFL-------PPAIKMVFLSATMS 919 R + + V V I DE+H + D ERG V E + + +++V LSAT+ Sbjct: 637 RKANDLSYVNLVRLVIIDEVHLLHD-ERGPVLESIVARIFRHQEETLEQVRLVGLSATLP 695 Query: 920 NATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQ 1099 N T+ A ++ K+ + +RP PL+ ++ + E F+ ++Q Sbjct: 696 NYTDVASFLHVDPKKGLFYFDSTYRPCPLKQE---------FIGITEKTPFK-----RMQ 741 Query: 1100 DTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRE 1279 T Y K++ V+IF SR+E Sbjct: 742 TT------------------------------NEACYE--KVMQHAGKNQVLIFVHSRKE 769 Query: 1280 CEHHAMSMSKLDFNTQEEKDNIEQVFRS--AIFCLSEEDRGLPAIELMLPLLKRGIAVHH 1453 A + + E++ I + RS A + + + E + LL G A+HH Sbjct: 770 TAKTARFIR----DKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHH 825 Query: 1454 SGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVV 1576 +G F +G ++ L +T T A G+N+PA TV+ Sbjct: 826 AGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVI 866 Score = 54.3 bits (129), Expect = 4e-06 Identities = 94/437 (21%), Positives = 165/437 (37%), Gaps = 28/437 (6%) Frame = +2 Query: 395 LSKDEAVHGTLSNPAFNGEMAKTYP-------FQLDPFQSISIACLERNESVLVSAHTSA 553 L A +L+NP+F YP Q F S+ + N+SV + A + Sbjct: 1340 LDLQNAPVSSLNNPSF----ISLYPNFKFFNKIQTQVFNSV----YKTNDSVFIGAPNGS 1391 Query: 554 GKTAIAEYAIA--MSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVG------LMTG--- 700 GKT AE A+ S D +Y +P++ + +++Y E +FSD+G +TG Sbjct: 1392 GKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLGDGKVLVKLTGERS 1451 Query: 701 -DVTLQPNATCLVMTTEILRAM--LYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESI- 868 D+ L A + T ++ +R I++V + I DE+ + G ++E I Sbjct: 1452 QDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLL-GGFYGPLYEIVIS 1510 Query: 869 ------VFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIG 1030 V L I++V LS +++NA + EW+ Q RP PL ++ Sbjct: 1511 RIRYMAVQLEKNIRVVGLSVSVANARDLGEWL-GTSPQCIFNFSPKDRPNPLTIHL---- 1565 Query: 1031 GSGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIY 1210 F +F L +K IY Sbjct: 1566 -----------QSFSITHFPSLMLAMSK-----------------------------PIY 1585 Query: 1211 RIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSAIFCLSEED 1390 R +K + ++ + I+F+ R+ + A + + F+ +E + + + + F E+ Sbjct: 1586 RSLKNFISQR-KSTIVFTPDRKVAKQLAFDL--VTFSMADEDEYLFSLMENEAFNKVED- 1641 Query: 1391 RGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKT 1570 + LK GIA ++ GL+K L A+ L + Sbjct: 1642 ------AALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNA 1695 Query: 1571 VVFTSVKKWDGDSNRYI 1621 V+ + +DG +RYI Sbjct: 1696 VIVMGTQYYDGKEHRYI 1712
>Q58796:Y1401_METJA Probable ATP-dependent helicase MJ1401 - Methanococcus jannaschii| Length = 808 Score = 69.3 bits (168), Expect = 1e-10 Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 17/199 (8%) Frame = +2 Query: 473 QLDPFQSISI-ACLERNESVLVSAHTSAGKTAIAEYA-IAMSFRDKQRVIYTSPLKALSN 646 +L P Q++S+ A L + +L+ + TS+GKT I E A I + ++ ++ PL AL+N Sbjct: 211 ELLPVQTLSVKAGLLNGDDLLIISATSSGKTLIGELAGIKNLIKTGKKFLFLVPLVALAN 270 Query: 647 QKYRELSQEFSDVGLMTG------------DVTLQPNATCLVMTTEILRAMLYRGSEVIK 790 QKY E + + +G DV +A +V T E + ++ ++ +K Sbjct: 271 QKYLEFKERYEKLGFKVSLRVGLGRIGKKVDVETSLDADIIVGTYEGIDYLIR--TKRLK 328 Query: 791 EVGWVIFDEIHYMKDRERGVVWEESI---VFLPPAIKMVFLSATMSNATEFAEWICNLHK 961 ++G V+ DEIH + ERG + I FL + ++LSAT+ N E A+ + Sbjct: 329 DIGTVVIDEIHSLNLEERGARLDGLIGRLRFLFKEAQKIYLSATIGNPKELAKQL----- 383 Query: 962 QPCHVVYTDFRPTPLQHYV 1018 +V + RP PL+ ++ Sbjct: 384 -NAKLVLYNGRPVPLERHI 401
>Q09475:YP93_CAEEL Uncharacterized helicase C28H8.3 - Caenorhabditis elegans| Length = 1714 Score = 68.9 bits (167), Expect = 1e-10 Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 17/176 (9%) Frame = +2 Query: 470 FQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFR--DKQRVIYTSPLKALS 643 F D +Q + ++R S L+ A TSAGKT ++ Y I R D V+Y +P KAL Sbjct: 783 FAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVYVAPSKALI 842 Query: 644 NQ---------KYRELSQEFSDVGLMTGDVTLQPNATCLVMTT------EILRAMLYRGS 778 NQ + + + + S G +T + + Q C V+ T E++ + Sbjct: 843 NQVCGSVYARFRNKSMKRGISLFGTLTQEYS-QNAMQCQVLITVPECLQELMLSRTPAVQ 901 Query: 779 EVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWI 946 + + + +V+FDE+H + E +WE+ ++ + + LSAT+ NA + EW+ Sbjct: 902 KFVSHIKYVVFDEVHSIGASEESHIWEQLLLLI--QCPFLALSATIGNANKLHEWL 955 Score = 50.1 bits (118), Expect = 7e-05 Identities = 22/57 (38%), Positives = 34/57 (59%) Frame = +2 Query: 1409 ELMLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVF 1579 +++L L +RGI HH+G F+ G + LF+T T ++G+NMP KTV+F Sbjct: 1272 QVLLKLFERGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF 1328
>P32639:BRR2_YEAST Pre-mRNA-splicing helicase BRR2 - Saccharomyces cerevisiae (Baker's| yeast) Length = 2163 Score = 66.2 bits (160), Expect = 9e-10 Identities = 100/426 (23%), Positives = 178/426 (41%), Gaps = 36/426 (8%) Frame = +2 Query: 476 LDPFQS-ISIACLERNESVLVSAHTSAGKTAIAEY----AIAMSFRDKQR--------VI 616 L+P QS + A E + ++L+ A T +GKT IA A++ + K + ++ Sbjct: 499 LNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIV 558 Query: 617 YTSPLKALSNQKYRELSQEFSDVGL----MTGDVTL---QPNATCLVMTTEILRAMLYRG 775 Y +PLKAL ++ RE + + +G+ +TGD L Q + T ++++T + R Sbjct: 559 YIAPLKALVQEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDITTRN 618 Query: 776 SE---VIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIK-------MVFLSATMSNA 925 S +++ V +I DEIH + D +RG V E + A K ++ LSAT+ N Sbjct: 619 SNNLAIVELVRLLIIDEIHLLHD-DRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNY 677 Query: 926 TEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDT 1105 + ++ + K+ + FRP PL I +E N LK Sbjct: 678 EDVGRFL-RVPKEGLFYFDSSFRPCPLSQQFCGI---------------KERNSLKKL-- 719 Query: 1106 FAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECE 1285 A + ++++ I + +I+F SR+E Sbjct: 720 --------------------------KAMNDACYEKVLESI--NEGNQIIVFVHSRKETS 751 Query: 1286 HHAMSMSKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKR----GIAVHH 1453 A + N E++ ++ ++ S++ A ++ P L++ GI HH Sbjct: 752 RTATWLK----NKFAEENITHKLTKND--AGSKQILKTEAANVLDPSLRKLIESGIGTHH 805 Query: 1454 SGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVF--TSVKKWDGDSNRYIAS 1627 +G F +GL++ L T T A G+N+PA TV+ T V + S ++ Sbjct: 806 AGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSP 865 Query: 1628 GEYIQM 1645 + +QM Sbjct: 866 QDVLQM 871 Score = 45.4 bits (106), Expect = 0.002 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 24/182 (13%) Frame = +2 Query: 470 FQLDPFQSISIACLER----NESVLVSAHTSAGKTAIAEYAIAMSFR-DKQRVIYTSPLK 634 F+ F I E N+SV V + GKTA+AE A+ +R +K R +Y +P Sbjct: 1343 FEFKTFNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQNKGRAVYINPSG 1402 Query: 635 ALSNQKYRELSQEFSDV--GLMTGDVTLQPNATC-------LVMTTEI---LRAMLYRGS 778 + + ++ FS + G + + P+ +++ T + L + +R Sbjct: 1403 EKIDFLLSDWNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRRWRQR 1462 Query: 779 EVIKEVGWVIFDEIHYMKDRERGVVWEESI---VF----LPPAIKMVFLSATMSNATEFA 937 + I+ + +I+D+ H + G V+E I +F L I+ V LS ++NA +F Sbjct: 1463 KNIQSLELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANARDFG 1522 Query: 938 EW 943 EW Sbjct: 1523 EW 1524
>O75643:U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase - Homo sapiens| (Human) Length = 2136 Score = 65.1 bits (157), Expect = 2e-09 Identities = 100/457 (21%), Positives = 178/457 (38%), Gaps = 32/457 (7%) Frame = +2 Query: 425 LSNPAFNGEMAKTYPFQLDPFQS-ISIACLERNESVLVSAHTSAGKTAIAEYAIAMSF-- 595 L N AF +PF +P Q+ + +++V V A T +GKT AE+AI Sbjct: 1312 LRNSAFESLYQDKFPF-FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ 1370 Query: 596 RDKQRVIYTSPLKALSNQKYRELSQEFSD-----VGLMTG----DVTLQPNATCLVMTTE 748 + R +Y +P++AL+ Q Y + ++F D V L+TG D+ L ++ T E Sbjct: 1371 SSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPE 1430 Query: 749 --ILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWE---------ESIVFLPPAIKM 895 + + ++ + ++ + + DE+H + E G V E S + P I++ Sbjct: 1431 KWDILSRRWKQRKNVQNINLFVVDEVHLI-GGENGPVLEVICSRMRYISSQIERP--IRI 1487 Query: 896 VFLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYV--FPIGGSGLYLVVDENGQ 1069 V LS+++SNA + A W+ + + RP PL+ ++ F I + L+ Sbjct: 1488 VALSSSLSNAKDVAHWL-GCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL------ 1540 Query: 1070 FREDNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQP 1249 S +Y + +K P Sbjct: 1541 ----------------------------------------SMAKPVYHAITKHSPKK--P 1558 Query: 1250 VIIFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIE-----L 1414 VI+F SR++ ++ +D T D Q F + C +E+D +P +E Sbjct: 1559 VIVFVPSRKQTR-----LTAIDILTTCAADIQRQRF---LHC-TEKDL-IPYLEKLSDST 1608 Query: 1415 MLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKK 1594 + L G+ H G F G ++ + A+ + G+N+ A V+ + Sbjct: 1609 LKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQY 1668 Query: 1595 WDGDSNRYIASGEY--IQMSXXXXXXXXXXXXICVIM 1699 ++G + Y+ Y +QM CVIM Sbjct: 1669 YNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1705 Score = 44.3 bits (103), Expect = 0.004 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Frame = +2 Query: 1250 VIIFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFR---SAIFCLSEEDRGLPAIELML 1420 V++F SR+E A ++ + EKD + R ++ L E +EL Sbjct: 721 VLVFVHSRKETGKTARAIRDMCL----EKDTLGLFLREGSASTEVLRTEAEQCKNLELK- 775 Query: 1421 PLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWD 1600 LL G A+HH+G F + ++ L +T T A G+N+PA TV+ + + Sbjct: 776 DLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYS 835 Query: 1601 GDSNRYIASG 1630 + R+ G Sbjct: 836 PEKGRWTELG 845
>Q9VUV9:U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase -| Drosophila melanogaster (Fruit fly) Length = 2142 Score = 62.4 bits (150), Expect = 1e-08 Identities = 91/401 (22%), Positives = 157/401 (39%), Gaps = 28/401 (6%) Frame = +2 Query: 503 ACLERNESVLVSAHTSAGKTAIAEYAIAMSF-----------RDKQRVIYTSPLKALSNQ 649 A L+ +E++L+ A T AGKT +A + ++IY +P+K+L + Sbjct: 491 AALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQE 550 Query: 650 KY----RELSQEFSDVGLMTGDVTL---QPNAT-CLVMTTEILRAMLYRGSE--VIKEVG 799 R L+ V +TGD L Q AT +V T E + +G E + V Sbjct: 551 MVGNFGRRLACYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVR 610 Query: 800 WVIFDEIHYMKDRERGVVWE-------ESIVFLPPAIKMVFLSATMSNATEFAEWICNLH 958 VI DEIH + D ERG V E +I +++V LSAT+ N + A ++ Sbjct: 611 LVIIDEIHLLHD-ERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKP 669 Query: 959 KQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPSQPDGR 1138 + +RP L+ Y+ V E + F + + ++ + GR Sbjct: 670 DKGLFYFDNSYRPVSLEQQ---------YIGVTEKKALK--RFQVMNEIVYEKTMEHAGR 718 Query: 1139 KGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSMSKLDF 1318 V++F SR+E A ++ + Sbjct: 719 -----------------------------------NQVLVFVHSRKETGKTARAVRDMCL 743 Query: 1319 NTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGXXXXXXXXXXXXF 1498 Q+ + + +++ L E + EL LL G A+HH+G F Sbjct: 744 E-QDTLGSFLKEGSASMEVLRTEAEQVKNTELK-ELLPYGFAIHHAGMTRVDRTLVEDLF 801 Query: 1499 QEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYI 1621 + ++ L +T T A G+N+PA TV+ + ++ + R++ Sbjct: 802 ADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWV 842 Score = 50.4 bits (119), Expect = 5e-05 Identities = 90/426 (21%), Positives = 161/426 (37%), Gaps = 28/426 (6%) Frame = +2 Query: 425 LSNPAFNGEMAKTYPFQLDPFQS-ISIACLERNESVLVSAHTSAGKTAIAEYAIAMSF-- 595 L P F ++ +P Q +P Q+ + A +E+V V A T +GK IAE+AI F Sbjct: 1312 LRQPKFESFYSQRFP-QFNPIQTQVFNAVYNSDENVFVGAPTGSGKMTIAEFAIMRLFTT 1370 Query: 596 RDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATC-------LVMTTEIL 754 + R +Y +AL++ + + +F + + +T + LV+TT Sbjct: 1371 QSDARCVYLVSEEALADLVFADWHSKFGSLDIKVVKLTGETGTDLKLIAKGQLVITTADK 1430 Query: 755 RAMLYRGSEVIKEVGWV---IFDEIHYMKDRERGVVWEESIVF---------LPPAIKMV 898 +L R + K V V I DE+ + E V+ IV + I++V Sbjct: 1431 WDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVL---EIVCSRMRYISSQIEKQIRIV 1487 Query: 899 FLSATMSNATEFAEWI-CNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFR 1075 LSA++++A + A+W+ CN + RP PL+ ++ G Sbjct: 1488 ALSASLTDARDVAQWLGCN--PNATFNFHPSVRPIPLELHI--------------QGYNV 1531 Query: 1076 EDNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVI 1255 N ++ A+ + +Y + K PVI Sbjct: 1532 THNATRI------------------------------ATMSKPVYNAILKYSAHK--PVI 1559 Query: 1256 IFSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELML----- 1420 +F SR++ ++ +D T D + F +EE+ P +E M Sbjct: 1560 VFVSSRKQAR-----LTAIDVLTYAASD-----LQPNRFFHAEEEDIKPFLERMTDKTLK 1609 Query: 1421 PLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWD 1600 L +G+A H G F G V+ + G+++ A V+ + ++ Sbjct: 1610 ETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWGMSISAHLVIIMDTQFYN 1669 Query: 1601 GDSNRY 1618 G ++ Y Sbjct: 1670 GKNHSY 1675
>Q8N3C0:HELC1_HUMAN Activating signal cointegrator 1 complex subunit 3 - Homo sapiens| (Human) Length = 2202 Score = 59.7 bits (143), Expect = 8e-08 Identities = 95/426 (22%), Positives = 173/426 (40%), Gaps = 31/426 (7%) Frame = +2 Query: 446 GEMAKTYPFQLDPFQSISI-ACLERNESVLVSAHTSAGKTAIAEYAIAMSFR-------- 598 G++A +L+ QSI NE++L+ A T AGKT IA + R Sbjct: 467 GQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVI 526 Query: 599 --DKQRVIYTSPLKALSNQKYRELSQEFSDVGL----MTGDVTLQPNA---TCLVMTTEI 751 ++ +++Y +P+KAL+ + S+ +G+ +TGD+ L + T +++TT Sbjct: 527 KKNEFKIVYVAPMKALAAEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPE 586 Query: 752 LRAMLYRGS----EVIKEVGWVIFDEIHYMKDRERGVVWEESIV-------FLPPAIKMV 898 ++ R S + + V +I DE+H + + +RG V E + I+++ Sbjct: 587 KWDVVTRKSVGDVALSQIVRLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQSMIRIL 645 Query: 899 FLSATMSNATEFAEWICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFRE 1078 LSAT+ N + A + LH P Y+ GL+ +G+FR Sbjct: 646 GLSATLPNYLDVATF---LHVNP---------------YI------GLFFF---DGRFRP 678 Query: 1079 DNFLKLQDTFAKQPSQPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVII 1258 + L TF G K + ++ + N ++K + + V++ Sbjct: 679 ---VPLGQTFL------------GIKCANKMQQLNNMDEVC-YENVLKQV--KAGHQVMV 720 Query: 1259 FSFSRRECEHHAMSMSKLDFNTQEEKDNIEQVFRSA--IFCLSEEDRGLPAIELMLPLLK 1432 F +R AMS+ + N +I F + + L+E+ + + L Sbjct: 721 FVHARNATVRTAMSLIERAKNC----GHIPFFFSTQGHDYVLAEKQVQRSRNKQVRELFP 776 Query: 1433 RGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSN 1612 G ++HH+G F G +K L T T A G+N+PA V+ + + Sbjct: 777 DGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRG 836 Query: 1613 RYIASG 1630 ++ G Sbjct: 837 SFVDLG 842 Score = 47.4 bits (111), Expect = 4e-04 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Frame = +2 Query: 1244 QPVIIFSFSRRECEHHAMSMSKLDFNTQEEKDNI---EQVFRSAIFCLSEEDRGLPAIEL 1414 +PV+IF SRR+ A+ + ++ K + E+ + I + + + L Sbjct: 1556 KPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIATVRDSNLKLT---- 1611 Query: 1415 MLPLLKRGIAVHHSGXXXXXXXXXXXXFQEGLVKALFATETFAMGLNMPAKTVVFTSVKK 1594 L GI +HH+G F V+ L AT T A G+N PA V+ + Sbjct: 1612 ----LAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEY 1667 Query: 1595 WDGDSNRYI 1621 +DG + RY+ Sbjct: 1668 YDGKTRRYV 1676
>P95949:HELX_SULSO Uncharacterized ATP-dependent helicase SSO0112 - Sulfolobus| solfataricus Length = 875 Score = 58.9 bits (141), Expect = 1e-07 Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 35/190 (18%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSF---------RDKQRVIYTSPLK 634 P Q +I +++N +VLVS+ T +GKT A I S DK IY SPL+ Sbjct: 33 PPQRAAIPLIKQNYNVLVSSPTGSGKTLAAFLGILDSLFELGDNNELEDKVYAIYISPLR 92 Query: 635 ALSNQKYRELSQEFSD------------VGLMTGDVT-------LQPNATCLVMTTEILR 757 AL+N R L + ++ VG+ T D T L+ L+ T E Sbjct: 93 ALNNDMQRNLLEPLNELRQVNSKLPDVRVGIRTSDTTPYEKQKMLKKPPHILITTPESFG 152 Query: 758 AMLY--RGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIK-----MVFLSATM 916 + + S+ + +V W+I DEIH + + +RG + I + LSAT+ Sbjct: 153 ISITSPKFSQKLTDVKWIIVDEIHELANSKRGAYLSAMLELFRNLITKKEFVRIGLSATV 212 Query: 917 SNATEFAEWI 946 S E A+++ Sbjct: 213 SPLEEVAQFL 222
>O27830:HELX_METTH Uncharacterized ATP-dependent helicase MTH_1802 - Methanobacterium| thermoautotrophicum Length = 862 Score = 53.1 bits (126), Expect = 8e-06 Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 33/154 (21%) Frame = +2 Query: 488 QSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSF---------RDKQRVIYTSPLKAL 640 Q +I + R +VLVS+ T +GKT A +I D IY SPLKAL Sbjct: 37 QRYAIMDIHRGRNVLVSSPTGSGKTLTAFLSIISELTRLADDGELEDSVYCIYISPLKAL 96 Query: 641 SNQKYRELSQEFSDV---------------GLMTGDVT-------LQPNATCLVMTTEIL 754 N R L + S + + TGD T L+ L+ T E L Sbjct: 97 DNDIERNLEEPLSAIRDIAAGEGRDLEIRKAVRTGDTTSYERSRMLKKPPHILITTPETL 156 Query: 755 RAMLY--RGSEVIKEVGWVIFDEIHYMKDRERGV 850 +L + E + V +VI DEIH + D +RGV Sbjct: 157 SILLVAPKFREKLSTVRYVIVDEIHSLADNKRGV 190
>P30015:LHR_ECOLI Probable ATP-dependent helicase lhr - Escherichia coli| Length = 1538 Score = 51.6 bits (122), Expect = 2e-05 Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 41/185 (22%) Frame = +2 Query: 515 RNESVLVSAHTSAGKTAIAE-YAIAMSFRD------------KQRVIYTSPLKALSNQKY 655 R+E LV A T +GKT A YA+ FR+ R++Y SP+KAL Sbjct: 43 RSEHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQ 102 Query: 656 RELSQEFSD----------------VGLMTGDVTLQPNA-------TCLVMTTEILRAML 766 R L VG+ TGD Q + L+ T E L ML Sbjct: 103 RNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLML 162 Query: 767 -YRGSEVIKEVGWVIFDEIHYMKDRERG----VVWEESIVFLPPAIKMVFLSATMSNATE 931 R E ++ V VI DE+H + +RG + E L + + + LSAT+ +A++ Sbjct: 163 TSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASD 222 Query: 932 FAEWI 946 A ++ Sbjct: 223 VAAFL 227
>A3LZT3:DBP10_PICST ATP-dependent RNA helicase DBP10 - Pichia stipitis (Yeast)| Length = 931 Score = 50.1 bits (118), Expect = 7e-05 Identities = 67/262 (25%), Positives = 110/262 (41%), Gaps = 37/262 (14%) Frame = +2 Query: 266 LSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHEVAVPNGYDLSKDEAVHGTLSNPAFN 445 +SSED + EQ TAK A + + D KD A + +NP Sbjct: 40 ISSEDEAE-----EQPKKKQKTAKPAKEAFPSLELSGDEDEQDDDKDMASYFAANNP--Q 92 Query: 446 GEMAKTYPFQL-------------------DPFQSISIACLERNESVLVSAHTSAGKTA- 565 + AK FQ P Q +I + N V+ A T +GKTA Sbjct: 93 AKKAKAGSFQSFGLSKLVLTNIAKKGYRQPTPIQRKTIPLIMANRDVVGMARTGSGKTAA 152 Query: 566 ----IAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVG-----LMTGDVTLQP 718 + E S R R I SPL+ L+ Q Y+++ +EFS ++TG +L+ Sbjct: 153 FTLPVIEKLKGHSARVGIRAIILSPLRELALQTYKQV-KEFSKGSDLRAIVLTGGDSLED 211 Query: 719 NATCLVMTTEILRA----MLYRGSEV---IKEVGWVIFDEIHYMKDRERGVVWEESIVFL 877 + +V +I+ A L+ E+ +K V +++FDE ++ ++ E + L Sbjct: 212 QFSSMVSNPDIVIATPGRFLHLQVEMQLDLKTVEYIVFDEADHLFEQGFAEQLNELLAVL 271 Query: 878 PPAIKMVFLSATMSNA-TEFAE 940 PP + + SAT+ + +FA+ Sbjct: 272 PPQRQSLLFSATLPRSLVDFAK 293
>Q57742:HELX_METJA Uncharacterized ATP-dependent helicase MJ0294 - Methanococcus| jannaschii Length = 841 Score = 48.9 bits (115), Expect = 1e-04 Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 36/233 (15%) Frame = +2 Query: 404 DEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYA- 580 DE ++ L P K F P Q +I + ++VL+ + T +GKT A A Sbjct: 13 DEEIYEILEKPVKEWFKRKYKTFT--PPQRYAIKEIHEGKNVLICSPTGSGKTLSAFLAG 70 Query: 581 ----IAMSFRDKQR----VIYTSPLKALSNQKYRELSQEFSD----------------VG 688 I +S +K ++Y SPL+AL+N R L + + V Sbjct: 71 INELIKLSMENKLEDRIYILYVSPLRALNNDIERNLKEPLKEIYDVAKEIGIELDEIRVA 130 Query: 689 LMTGDVT-------LQPNATCLVMTTEILRAMLY--RGSEVIKEVGWVIFDEIHYMKDRE 841 + T D T L+ L+ T E L L + S+++ + +VI DEIH + ++ Sbjct: 131 VRTSDTTSSQKQRMLKKPPHILITTPESLAIALNSPKFSQLLSGIKYVIVDEIHALTNK- 189 Query: 842 RGVVWEESIVFLPPAIKM--VFLSATMSNATEFAEWICNLHKQPCHVVYTDFR 994 RGV S+ L + LSAT+ TE A+++ + + C++V ++ Sbjct: 190 RGVHLSLSLERLNRIANFIRIGLSATIHPLTEVAKFLVG-NGRDCYIVDVSYK 241
>A5DLR3:DBP10_PICGU ATP-dependent RNA helicase DBP10 - Pichia guilliermondii (Yeast)| (Candida guilliermondii) Length = 914 Score = 45.8 bits (107), Expect = 0.001 Identities = 61/265 (23%), Positives = 113/265 (42%), Gaps = 23/265 (8%) Frame = +2 Query: 215 IKEMEEVENSSKRKAPELSSEDNSSAVVL----HEQEPLPGSTAK--RQNLARSCIHEVA 376 I + EE +SS+ K P++S++ S + + E P A+ N ++ + Sbjct: 40 ISDDEEKSSSSQNKKPKISTKPESFPSLELSDDEDDESRPSEVAEYFSNNKLQATKAKAG 99 Query: 377 VPNGYDLSKDEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAG 556 + LSK L N A G T P Q +I + + V+ A T +G Sbjct: 100 SFASFGLSKF-----LLKNIAKKGFKQPT------PIQRKTIPLVMESRDVVGMARTGSG 148 Query: 557 KTA-----IAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQ-----EFSDVGLMTGD- 703 KTA + E + S + R + SPL+ L+ Q ++++ + + + L+ GD Sbjct: 149 KTAAFVLPVVEKLKSHSPKVGVRAVILSPLRELALQTFKQVKEFTKGTDLRSIVLIGGDS 208 Query: 704 -----VTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESI 868 +++ N LV T + + +K V +++FDE + + E + Sbjct: 209 LEDQFLSMMTNPDILVATPGRFLHLKVEMNLDLKTVEYIVFDEADRLFEMGFAEQLNELL 268 Query: 869 VFLPPAIKMVFLSATMSNA-TEFAE 940 V LPP+ + + SAT+ + +FA+ Sbjct: 269 VALPPSRQSLLFSATLPRSLVDFAK 293
>Q8TDD1:DDX54_HUMAN ATP-dependent RNA helicase DDX54 - Homo sapiens (Human)| Length = 881 Score = 43.1 bits (100), Expect = 0.008 Identities = 62/244 (25%), Positives = 94/244 (38%), Gaps = 19/244 (7%) Frame = +2 Query: 263 ELSSEDNSSAVVLHEQEPLPG-STAKRQNLARSCIHEVAVPNGYDLSKDEAVHGT-LSNP 436 E+ +ED++ A L PLP T++ + E+ K LS P Sbjct: 47 EIQAEDDARARKLGPGRPLPTFPTSECTSDVEPDTREMVRAQNKKKKKSGGFQSMGLSYP 106 Query: 437 AFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRD 601 F G M K Y P Q +I + + V+ A T +GKTA + E S + Sbjct: 107 VFKGIMKKGYKVPT-PIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQT 165 Query: 602 KQRVIYTSPLKALSNQKYRELSQEFSDVGLMT-----GD------VTLQPNATCLVMTTE 748 R + SP + L+ Q + + GL T GD L N ++ T Sbjct: 166 GARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPG 225 Query: 749 ILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSN-A 925 L + S ++ V +V+FDE + + +E I LP + V SAT+ Sbjct: 226 RLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFSATLPKLL 285 Query: 926 TEFA 937 EFA Sbjct: 286 VEFA 289
>Q7RY59:RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 - Neurospora crassa| Length = 515 Score = 42.7 bits (99), Expect = 0.011 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 16/166 (9%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRE 661 P Q SI +N ++ A T +GKTA I + DK ++ L A + + + Sbjct: 115 PIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALVL-APTRELAAQ 173 Query: 662 LSQEFSDVG--------LMTGDVTLQPNATCLVMTTEILRAMLYRGSE--------VIKE 793 ++Q F +G L+ G + + A L ++ A R + ++ Sbjct: 174 IAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLLDHLEKTKGFSLRS 233 Query: 794 VGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATE 931 + +++ DE + D + G + E+ + FLP + SATMS+ E Sbjct: 234 MQYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSATMSSKVE 279
>Q8K4L0:DDX54_MOUSE ATP-dependent RNA helicase DDX54 - Mus musculus (Mouse)| Length = 874 Score = 42.0 bits (97), Expect = 0.018 Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 17/188 (9%) Frame = +2 Query: 425 LSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAM 589 LS P F G M K Y P Q +I + + V+ A T +GKTA + E A Sbjct: 102 LSYPVFKGIMKKGYKVPT-PIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKAR 160 Query: 590 SFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMT-----GD------VTLQPNATCLV 736 S + R + SP + L+ Q + + GL T GD L N ++ Sbjct: 161 SAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIII 220 Query: 737 MTTEILRAMLYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATM 916 T L + + ++ V +V+FDE + + +E I LP + V SAT+ Sbjct: 221 ATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATL 280 Query: 917 SN-ATEFA 937 EFA Sbjct: 281 PKLLVEFA 288
>Q2H1Q8:RRP3_CHAGB ATP-dependent rRNA helicase RRP3 - Chaetomium globosum (Soil fungus)| Length = 493 Score = 41.6 bits (96), Expect = 0.024 Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 20/200 (10%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRE 661 P Q SI ++ ++ A T +GKT I + DK + ++ L A + + + Sbjct: 90 PIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVL-APTRELAAQ 148 Query: 662 LSQEFSDVG--------LMTGDVTLQPNATCLVMTTEILRAMLYRGSE--------VIKE 793 ++Q F +G L+ G + + A L ++ A R + ++ Sbjct: 149 IAQSFEALGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKGFSLRN 208 Query: 794 VGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCH 973 + +++ DE + D + G + ++ + FLP + SATMS+ E + C + P Sbjct: 209 LRYLVMDEADRLLDMDFGPILDKILKFLPRERRTFLFSATMSSKVESLQRAC--LRDPLK 266 Query: 974 VVYTDFR----PTPLQHYVF 1021 V + + T +Q+YVF Sbjct: 267 VSISSSKYQTVSTLVQNYVF 286
>Q5ZI74:DHX30_CHICK Putative ATP-dependent RNA helicase DHX30 - Gallus gallus (Chicken)| Length = 1231 Score = 41.6 bits (96), Expect = 0.024 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 13/168 (7%) Frame = +2 Query: 458 KTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYT 622 +++P +DP + ++ +E+N V+++ T GKT + E+ I + V+ T Sbjct: 474 ESHPLPVDPHKDTILSAIEQNPVVVIAGDTGCGKTTRIPQLLLEHYILEGRGARCNVVIT 533 Query: 623 SPLKALSNQKYRELSQEF-----SDVGLMTGDVTLQP--NATCLVMTTEILRAMLYRGSE 781 P + + + ++QE +VG + P L T IL L +G+ Sbjct: 534 QPRRISAISVAQRVAQELGPNMRKNVGYQVRLESKPPARGGALLFCTVGILLRKL-QGNP 592 Query: 782 VIKEVGWVIFDEIHYMK-DRERGVVWEESIVFLPPAIKMVFLSATMSN 922 ++ V V+ DE+H + + ++ + I L P +++V +SAT N Sbjct: 593 SLEGVSHVVVDEVHERDVNTDFLLILLKGIQKLNPDLRLVLMSATGDN 640
>P32380:NUF1_YEAST Protein NUF1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 944 Score = 40.8 bits (94), Expect = 0.040 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 9/187 (4%) Frame = +2 Query: 2471 EPELVDLVHKLDGLEQKLCSHPLNKSDQSEQQLSWYQRKAELNHEIQQLKSKM--RDSQL 2644 E +L +L KL ++ ++ N QS + S L +E+ +LKS +D+QL Sbjct: 233 ERKLAELERKLKTVKDQVLELENNSDVQSLKLRSKEDELKNLMNELNELKSNAEEKDTQL 292 Query: 2645 QKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAACLIDTGDEL--LITELMFNGTFNDLDH 2818 + ++EL+ R+ L L + LQLK + DEL L T+ NG+ + Sbjct: 293 EFKKNELRKRTNELNELKIKSDEMDLQLKQKQNESKRLKDELNELETKFSENGSQSSAKE 352 Query: 2819 HQVASVVSCFVPCE-----KSSEQIRLRNELSKPMMQLSEAARKIAEVQRECKLDVNVEE 2983 +++ + + E K+S+ I +L+ M QL++ K+ QR+ +L EE Sbjct: 353 NELKMLKNKIAELEEEISTKNSQLIAKEGKLASLMAQLTQLESKLN--QRDSQLGSREEE 410 Query: 2984 YVESTCK 3004 ++ K Sbjct: 411 LKKTNDK 417
>Q6BL34:DBP10_DEBHA ATP-dependent RNA helicase DBP10 - Debaryomyces hansenii (Yeast)| (Torulaspora hansenii) Length = 932 Score = 40.4 bits (93), Expect = 0.053 Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 17/165 (10%) Frame = +2 Query: 473 QLDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKA 637 Q P Q +I + N V+ A T +GKTA + E + S R R I SP + Sbjct: 119 QPTPIQRKTIPLIMENRDVVGMARTGSGKTAAFTLPLVEKLKSHSPRVGVRAIILSPSRE 178 Query: 638 LSNQKYRELSQ-----EFSDVGLMTGDVTLQPNATCLVMTTEILRA----MLYRGSEV-- 784 L++Q ++++ + + + L+ GD +L+ + ++ +++ A L+ E+ Sbjct: 179 LASQTFKQVKEFSKGTDLRSIVLIGGD-SLEEQFSSMMTNPDVIVATPGRFLHLKVEMEL 237 Query: 785 -IKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATM 916 +K V +++FDE + + E I LP + + + SAT+ Sbjct: 238 ELKTVEYIVFDEADRLFEMGFAEQLNELIAALPSSRQSLLFSATL 282
>Q4IFI0:RRP3_GIBZE ATP-dependent rRNA helicase RRP3 - Gibberella zeae (Fusarium| graminearum) Length = 486 Score = 39.3 bits (90), Expect = 0.12 Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 26/257 (10%) Frame = +2 Query: 239 NSSKRKAPELSSEDNSSAVVLHEQ---EPLPGSTAKRQN----LARSCIHEVAVPNGYDL 397 N +KR+ + N+ V + EP P S + + L E AV Sbjct: 2 NGAKRRKVAQDTPRNTKPVAQEKPARAEPKPSSDEESEEESATLEEPSAEETAVDAPKKT 61 Query: 398 SKDEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEY 577 KD V+ L ++ YP P Q SI + ++ A T +GKTA Sbjct: 62 FKDLGVNDALCEAC--EKLNYKYP---TPIQEKSIPVALQGRDIIGLAETGSGKTAAFAL 116 Query: 578 AIAMSFRDKQRVIY---TSPLKALSNQKYRELSQEFSDVG--------LMTGDVTLQPNA 724 + + DK + ++ +P + L+ Q + Q F +G ++ G + + P A Sbjct: 117 PVLQALLDKPQPLFGLVLAPTRELATQ----IGQAFEALGSLISLRCAVIVGGLDMVPQA 172 Query: 725 TCLVMTTEILRAMLYRGSE--------VIKEVGWVIFDEIHYMKDRERGVVWEESIVFLP 880 L I+ A R + ++ + ++I DE + D + G ++ + F+P Sbjct: 173 IALGKKPHIVVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVP 232 Query: 881 PAIKMVFLSATMSNATE 931 + SAT+S+ E Sbjct: 233 RERRTYLFSATISSKIE 249
>Q5R874:DHX9_PONPY ATP-dependent RNA helicase A - Pongo pygmaeus (Orangutan)| Length = 1269 Score = 38.9 bits (89), Expect = 0.15 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 14/191 (7%) Frame = +2 Query: 485 FQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQR-----VIYTSP--LKALS 643 F+S + + +N V++ T GKT I F R ++ T P + A+S Sbjct: 393 FESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVS 452 Query: 644 NQKYRELSQEFSDVGLMTG------DVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWV 805 + R + + G G + +P+A+ + T +L L G I+ + V Sbjct: 453 VAE-RVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG---IRGISHV 508 Query: 806 IFDEIHYMK-DRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVY 982 I DEIH + + +V +V P +++V +SAT+ + + F E+ N C ++ Sbjct: 509 IVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATI-DTSMFCEYFFN-----CPIIE 562 Query: 983 TDFRPTPLQHY 1015 R P+Q Y Sbjct: 563 VYGRTYPVQEY 573
>Q08211:DHX9_HUMAN ATP-dependent RNA helicase A - Homo sapiens (Human)| Length = 1270 Score = 38.9 bits (89), Expect = 0.15 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 14/191 (7%) Frame = +2 Query: 485 FQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQR-----VIYTSP--LKALS 643 F+S + + +N V++ T GKT I F R ++ T P + A+S Sbjct: 393 FESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVS 452 Query: 644 NQKYRELSQEFSDVGLMTG------DVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWV 805 + R + + G G + +P+A+ + T +L L G I+ + V Sbjct: 453 VAE-RVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG---IRGISHV 508 Query: 806 IFDEIHYMK-DRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVY 982 I DEIH + + +V +V P +++V +SAT+ + + F E+ N C ++ Sbjct: 509 IVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATI-DTSMFCEYFFN-----CPIIE 562 Query: 983 TDFRPTPLQHY 1015 R P+Q Y Sbjct: 563 VYGRTYPVQEY 573
>A4RGD1:RRP3_MAGGR ATP-dependent rRNA helicase RRP3 - Magnaporthe grisea (Rice blast| fungus) (Pyricularia grisea) Length = 538 Score = 38.1 bits (87), Expect = 0.26 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 15/165 (9%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIY------TSPLKALS 643 P Q +I + V+ A T +GKTA I S +K + ++ T L A Sbjct: 135 PIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFGLVLAPTRELAAQI 194 Query: 644 NQKYRELSQEFS-DVGLMTGDVTLQPNATCLVMTTEILRAMLYRGSE--------VIKEV 796 Q + L S ++ G + + +T L I+ A R + ++ + Sbjct: 195 GQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRLLDHLEKTKGFSLRSL 254 Query: 797 GWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATE 931 +++ DE + D + G + ++ + FLP + SATMS+ E Sbjct: 255 KFLVMDEADRLLDLDFGPILDKILKFLPRERRTFLFSATMSSKVE 299
>Q6CEB8:DRS1_YARLI ATP-dependent RNA helicase DRS1 - Yarrowia lipolytica (Candida| lipolytica) Length = 753 Score = 37.7 bits (86), Expect = 0.34 Identities = 66/272 (24%), Positives = 106/272 (38%), Gaps = 50/272 (18%) Frame = +2 Query: 260 PELSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIH-----------------------E 370 PE E+N V E+E GS ++ A C+H E Sbjct: 177 PEDEDEENKEEVENEEEEDSDGSDSE----AEECMHPDDLVLDDHKGPAIDEGPQDTAEE 232 Query: 371 VAV---PNGYDLSKDEAVHGT-----LSNPAFNGEMAKTYPFQLDPFQSISIACLERNES 526 +A P + K E+VH T LS P G A Y P QS +I + Sbjct: 233 MAAFYAPEEENNDKTESVHKTFQTLNLSRPVMKGISALGYQAPT-PIQSRTIPIALMGKD 291 Query: 527 VLVSAHTSAGKTA-----IAEYAIAMSFR-DKQRVIYTSPLKALSNQKY---RELSQEFS 679 ++ A T +GKTA + E + S + +V+ +P + LS Q ++L+Q S Sbjct: 292 LVAGAVTGSGKTAAYIIPVLERLLYKSSKVAATKVVVLTPTRELSIQVADVGKKLAQYVS 351 Query: 680 DV--GLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIK--------EVGWVIFDEIHYM 829 V GL G + L+ L E++ A R + ++ +V ++ DE M Sbjct: 352 GVRFGLAVGGLNLRVQEQELKTRPEVVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRM 411 Query: 830 KDRERGVVWEESIVFLPPAIKMVFLSATMSNA 925 + E + LP + + SATM+++ Sbjct: 412 LEEGFQQELTEILTLLPKKRQTLLFSATMNSS 443
>P76257:YOAA_ECOLI Probable ATP-dependent helicase yoaA - Escherichia coli| Length = 636 Score = 37.4 bits (85), Expect = 0.45 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 9/106 (8%) Frame = +2 Query: 443 NGEMAKTYPF--QLDPFQSISIA---CLERNESVLVSAHTSAGKTAIAEYA-IAMSFRDK 604 +G++AK P +P + +++A +E+ + ++V A T GKT YA +A + R K Sbjct: 8 DGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKT----YAYLAPALRAK 63 Query: 605 QRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTL---QPNATCL 733 ++VI ++ KAL +Q Y S TG+V L + N CL Sbjct: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCL 109
>Q9VJE5:CL190_DROME Restin homolog - Drosophila melanogaster (Fruit fly)| Length = 1690 Score = 37.4 bits (85), Expect = 0.45 Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 9/113 (7%) Frame = +2 Query: 2462 GIEEPELVDLVHKLDGLEQKL--CSHPLNKSDQSEQQLSWY-----QRKAELNHEIQQLK 2620 GI+E EL + +LD ++K L ++ QSEQ+L ++ E+ +Q+L+ Sbjct: 1172 GIKE-ELKETHLQLDERQKKFEELEEKLKQAQQSEQKLQQESQTSKEKLTEIQQSLQELQ 1230 Query: 2621 S--KMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAACLIDTGDELL 2773 K ++ +Q ++++ S +++ + +QL+ + +CL +T D+LL Sbjct: 1231 DSVKQKEELVQNLEEKVRESSSIIEAQNTKLNESNVQLENKTSCLKETQDQLL 1283
>Q06698:YL419_YEAST Putative ATP-dependent RNA helicase YLR419W - Saccharomyces| cerevisiae (Baker's yeast) Length = 1435 Score = 37.0 bits (84), Expect = 0.58 Identities = 41/188 (21%), Positives = 83/188 (44%), Gaps = 12/188 (6%) Frame = +2 Query: 488 QSISIACLERNESVLVSAHTSAGK-TAIAEYAIAMSFRD-----KQRVIYTSPLKALSNQ 649 Q + I + +NE VL++ T +GK T + ++ + ++ K +++ T P + + Sbjct: 610 QKVIIDIINKNEVVLITGETGSGKSTQVVQFILDFLQKEKGDFGKTKIVCTQPRRISAIG 669 Query: 650 KYRELSQE-----FSDVGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWVIFD 814 +S E +VG + V +T + T + L + + + E V+ D Sbjct: 670 LAERVSDERCVTCGEEVGYVIRGVNKTKASTRIKFMTTGVLVRLLQNARTMLENTIVVID 729 Query: 815 EIHYMK-DRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYTDF 991 E+H D + V ++++ +K+V +SAT+ N F ++ L CH+ + Sbjct: 730 EVHERSIDTDLIVTLMKNLLHRVRGMKIVLMSATV-NVDLFKKFFPGL--ATCHI---EG 783 Query: 992 RPTPLQHY 1015 R P+ Y Sbjct: 784 RTFPITDY 791
>Q9P6N8:RRP3_SCHPO ATP-dependent rRNA helicase rrp3 - Schizosaccharomyces pombe (Fission| yeast) Length = 465 Score = 37.0 bits (84), Expect = 0.58 Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 19/209 (9%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRE 661 P Q +I + V+ A T +GKTA + + + L Y + Sbjct: 71 PIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAY-Q 129 Query: 662 LSQEFSDVG---------------LMTGDVTLQPNATCLVMTTEILRAMLYRGSEV-IKE 793 +S++F +G ++T V L LV T L L +K Sbjct: 130 ISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKN 189 Query: 794 VGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCH 973 + ++I DE + D + G + ++ + +P + + SATM++ E + +LH+ Sbjct: 190 LKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQ-RASLHQPVRV 248 Query: 974 VVYTDFR--PTPLQHYV-FPIGGSGLYLV 1051 V + F T +Q Y+ FP YLV Sbjct: 249 AVSSKFSTVDTLIQRYLFFPFKHKDTYLV 277
>Q56X76:RH39_ARATH DEAD-box ATP-dependent RNA helicase 39 - Arabidopsis thaliana| (Mouse-ear cress) Length = 621 Score = 37.0 bits (84), Expect = 0.58 Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 36/221 (16%) Frame = +2 Query: 377 VPNGYDLSKDEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAG 556 V N +L E V G L E+ P ++ Q I I + +SV++ +HT +G Sbjct: 111 VENFQELGLSEEVMGALQ------ELNIEVPTEI---QCIGIPAVMERKSVVLGSHTGSG 161 Query: 557 KTAIAEYAIAMSFRD------------KQRVIYTSPLKALSNQKYRELSQ-----EFSDV 685 KT I R+ + R + P + LS Q YR F + Sbjct: 162 KTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSI 221 Query: 686 GLMTGDVTLQP------NATCLVMTT--EILRAMLYRGSEVIKEVGWVIFDEIHYMKDRE 841 L++G ++P NA +V+ T IL+ + G+ V ++ +++ DE M DR Sbjct: 222 -LVSGGSRIRPQEDSLNNAIDMVVGTPGRILQ-HIEEGNMVYGDIAYLVLDEADTMFDRG 279 Query: 842 RGVVWEESIVFLPP-----------AIKMVFLSATMSNATE 931 G E FL P + V ++ATM+ A + Sbjct: 280 FG---PEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQ 317
>O25149:PRIA_HELPY Primosomal protein N' - Helicobacter pylori (Campylobacter pylori)| Length = 619 Score = 36.6 bits (83), Expect = 0.76 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Frame = +2 Query: 476 LDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKY 655 L Q+ ++ L+++ + L+ T +GKT I +AIA + K+ + P AL+ Q Sbjct: 111 LSQTQTNALKELQKHSASLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIALTPQMQ 170 Query: 656 RELSQEFSD-VGLMTGDVTLQPNATCL--VMTTEILRAMLYRGSEV--IKEVGWVIFDEI 820 + L + F + +GL ++ L + + EI + R + +KE+G +I DE Sbjct: 171 QRLKRVFKENLGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALFLPLKELGLIIVDEE 230 Query: 821 H 823 H Sbjct: 231 H 231
>O74727:SUV3_SACDO ATP-dependent RNA helicase SUV3, mitochondrial precursor -| Saccharomyces douglasii (Yeast) Length = 737 Score = 36.2 bits (82), Expect = 1.00 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 6/137 (4%) Frame = +2 Query: 479 DPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYR 658 +P + S A R ++ T++GKT Y + R Y PL+ L+ + Y Sbjct: 219 NPAEWFSEARKIRRHIIMHIGPTNSGKT----YRALQKLKSVDRGYYAGPLRLLAREVYD 274 Query: 659 ELSQEFSDVGLMTGDVTLQP-----NATCLVM-TTEILRAMLYRGSEVIKEVGWVIFDEI 820 E L+TG+ ++ N L T E++ + ++ V+ DEI Sbjct: 275 RFQSEKVRCNLLTGEEVIRDLDDKGNPAGLTSGTVEMV--------PINQKFDVVVLDEI 326 Query: 821 HYMKDRERGVVWEESIV 871 M D +RG W +++ Sbjct: 327 QMMSDADRGWAWTNALL 343
>Q9ZKE4:PRIA_HELPJ Primosomal protein N' - Helicobacter pylori J99 (Campylobacter| pylori J99) Length = 619 Score = 36.2 bits (82), Expect = 1.00 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Frame = +2 Query: 476 LDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKY 655 L Q+ ++ L+++ + L+ T +GKT I +AIA + K+ + P AL+ Q Sbjct: 111 LSQTQTNALKELQKHPASLLFGDTGSGKTEIYMHAIAQTLEQKKSALLLVPEIALTPQMQ 170 Query: 656 RELSQEFSD-VGLMTGDVTLQPNATCL--VMTTEILRAMLYRGSEV--IKEVGWVIFDEI 820 + L + F + +GL ++ L + + EI + R + +KE+G +I DE Sbjct: 171 QRLKKVFKENLGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALFLPLKELGLIIVDEE 230 Query: 821 H 823 H Sbjct: 231 H 231
>Q28141:DHX9_BOVIN ATP-dependent RNA helicase A - Bos taurus (Bovine)| Length = 1287 Score = 36.2 bits (82), Expect = 1.00 Identities = 41/190 (21%), Positives = 80/190 (42%), Gaps = 13/190 (6%) Frame = +2 Query: 485 FQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKALSNQ 649 F+S + + +N V++ T GKT I + I + ++ T P + + Sbjct: 390 FESEILEAISQNPVVIIRGATGCGKTTQVPQFILDDCIQNDRAAECNIVVTQPRRISAVS 449 Query: 650 KYRELSQEFSD-------VGLMTGDVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWVI 808 ++ E + + + +P+A+ + T +L L G I+ + VI Sbjct: 450 VAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAG---IRGISHVI 506 Query: 809 FDEIHYMK-DRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYT 985 DEIH + + +V +V P +++V +SAT+ + + F E+ N C ++ Sbjct: 507 VDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATI-DTSMFCEYFFN-----CPIIEV 560 Query: 986 DFRPTPLQHY 1015 R P+Q Y Sbjct: 561 YGRTFPVQEY 570
>Q2H0R2:DBP10_CHAGB ATP-dependent RNA helicase DBP10 - Chaetomium globosum (Soil| fungus) Length = 762 Score = 36.2 bits (82), Expect = 1.00 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 17/169 (10%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKALSN 646 P Q +I + V+ A T +GKTA + E A S R R I SP + L+ Sbjct: 111 PIQRKTIPLVLERRDVVGMARTGSGKTAAFVIPMIERLKAHSARVGARAIIMSPSRELAL 170 Query: 647 QKYRELSQ-----EFSDVGLMTGDVT------LQPNATCLVMTTEILRAMLYRGSEVIKE 793 Q + + + + V L+ GD + N ++ T + S + Sbjct: 171 QTLKVVKELGKGTDLKTVLLVGGDSLEEQFGLMAANPDIIIATPGRFLHLKVEMSLNLSS 230 Query: 794 VGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATM-SNATEFA 937 V +V+FDE + + E + LPP+ + + SAT+ S+ EFA Sbjct: 231 VRYVVFDEADRLFEMGFAAQLTEILHALPPSRQTLLFSATLPSSLVEFA 279
>Q8K2L9:TAGAP_MOUSE T-cell activation Rho GTPase-activating protein - Mus musculus| (Mouse) Length = 714 Score = 35.8 bits (81), Expect = 1.3 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Frame = +2 Query: 2492 VHKLDGLEQKLCSHPLNKSDQSEQQLSWYQRKAELNHEIQQLKSKMRDSQLQKFRDELKN 2671 V+K+D +C P + +++Q LS +Q + +LN++++ L + D+ + F + ++ Sbjct: 225 VNKMDSSNLAICIGPNMLTLKNDQSLS-FQAQKDLNNKVKILVEFLIDNCFEIFGENIRT 283 Query: 2672 RSRVLK--MLGHIDTDGVLQLKGRAA 2743 RSR+ L H D+ V L+ +A Sbjct: 284 RSRITSDDSLEHTDSSDVSTLQNDSA 309
>Q10411:SPO15_SCHPO Sporulation-specific protein 15 - Schizosaccharomyces pombe (Fission| yeast) Length = 1957 Score = 35.8 bits (81), Expect = 1.3 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 28/200 (14%) Frame = +2 Query: 2477 ELVDLVHKLDGLEQKLCSHPLNKSDQSEQQLSWYQRKA--------ELNHEIQQLKS--- 2623 EL V KL L QKL S L+ + + QL + K EL+HEI K+ Sbjct: 1475 ELASAVEKLGAL-QKLHSESLSLMENIKSQLQEAKEKIQVDESTIQELDHEITASKNNYE 1533 Query: 2624 -KMRDSQ---------LQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAACL----IDTG 2761 K+ D +++ + L +K L +LQ R A L Sbjct: 1534 GKLNDKDSIIRDLSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLADLEYHKSQVE 1593 Query: 2762 DELLITELMFNGTFNDLD--HHQVASVVSCFVPCEKSSEQI-RLRNELSKPMMQLSEAAR 2932 EL ++L T +L ++ S+ + + + + + +++ LS+ + L Sbjct: 1594 SELGRSKLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLED 1653 Query: 2933 KIAEVQRECKLDVNVEEYVE 2992 +A +Q+ECK+ N E ++ Sbjct: 1654 SVASLQKECKIKSNTVESLQ 1673
>A5DQF1:RRP3_PICGU ATP-dependent rRNA helicase RRP3 - Pichia guilliermondii (Yeast)| (Candida guilliermondii) Length = 475 Score = 35.8 bits (81), Expect = 1.3 Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 15/162 (9%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYT---SPLKALSNQK 652 P QS +I + ++ A T +GKTA I S + QR Y +P + L+ Q Sbjct: 89 PIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQRPYYALVLAPTRELAYQI 148 Query: 653 YRELSQEFSDVGL----MTGDVTLQPNATCLVMTTEILRAMLYRGSE--------VIKEV 796 S +G+ + G + + A L+ IL A R + +K + Sbjct: 149 KETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLENTKGFSLKSL 208 Query: 797 GWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSN 922 +++ DE + D + G ++ + +P SATM+N Sbjct: 209 QYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLFSATMTN 250
>Q5BJS0:DHX30_RAT Putative ATP-dependent RNA helicase DHX30 - Rattus norvegicus (Rat)| Length = 1194 Score = 35.8 bits (81), Expect = 1.3 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 18/167 (10%) Frame = +2 Query: 476 LDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKAL 640 +DP + ++ +E++ V++S T GKT + E + + VI T P + Sbjct: 436 VDPHRDTILSAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRIS 495 Query: 641 SNQKYRELSQEFS-----DVGLMTGDVTLQP--NATCLVMTTEILRAMLYRGSEVIKEVG 799 + + +S E +VG + P L T IL L + + ++ V Sbjct: 496 AVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILLRKL-QSNPSLEGVS 554 Query: 800 WVIFDEIHYMKDRERGVVWEESIVFLP------PAIKMVFLSATMSN 922 VI DE+H ER V + ++ L PA+++V +SAT N Sbjct: 555 HVIVDEVH-----ERDVNTDFLLILLKGLQRLNPALRLVLMSATGDN 596
>Q99PU8:DHX30_MOUSE Putative ATP-dependent RNA helicase DHX30 - Mus musculus (Mouse)| Length = 1217 Score = 35.8 bits (81), Expect = 1.3 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 18/167 (10%) Frame = +2 Query: 476 LDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKAL 640 +DP + ++ +E++ V++S T GKT + E + + VI T P + Sbjct: 459 VDPHRDTILSAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRIS 518 Query: 641 SNQKYRELSQEFS-----DVGLMTGDVTLQP--NATCLVMTTEILRAMLYRGSEVIKEVG 799 + + +S E +VG + P L T IL L + + ++ V Sbjct: 519 AVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILLRKL-QSNPSLEGVS 577 Query: 800 WVIFDEIHYMKDRERGVVWEESIVFLP------PAIKMVFLSATMSN 922 VI DE+H ER V + ++ L PA+++V +SAT N Sbjct: 578 HVIVDEVH-----ERDVNTDFLLILLKGLQRLNPALRLVLMSATGDN 619
>P32580:SUV3_YEAST ATP-dependent RNA helicase SUV3, mitochondrial precursor -| Saccharomyces cerevisiae (Baker's yeast) Length = 737 Score = 35.4 bits (80), Expect = 1.7 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 12/131 (9%) Frame = +2 Query: 515 RNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLM 694 R ++ T++GKT Y + R Y PL+ L+ + Y E L+ Sbjct: 231 RRHIIMHIGPTNSGKT----YRALQKLKSVDRGYYAGPLRLLAREVYDRFHAEKIRCNLL 286 Query: 695 TGDVTLQPNATCLVMTTEILRAMLYRGSE------------VIKEVGWVIFDEIHYMKDR 838 TG+ E++R + RG+ + ++ V+ DEI M D Sbjct: 287 TGE--------------EVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDG 332 Query: 839 ERGVVWEESIV 871 +RG W +++ Sbjct: 333 DRGWAWTNALL 343
>Q6BQ61:RRP3_DEBHA ATP-dependent rRNA helicase RRP3 - Debaryomyces hansenii (Yeast)| (Torulaspora hansenii) Length = 477 Score = 35.0 bits (79), Expect = 2.2 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 15/162 (9%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIY---TSPLKALSNQK 652 P QS +I + ++ A T +GKTA I + + Q Y +P + L+ Q Sbjct: 90 PIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAYYGLVLAPTRELAYQI 149 Query: 653 YRELSQEFSDVGL----MTGDVTLQPNATCLVMTTEILRAMLYRGSE--------VIKEV 796 S +GL + G + + A L+ IL A R + +K + Sbjct: 150 KETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLEHTKGFSLKNL 209 Query: 797 GWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSN 922 +++ DE + D + G ++ + +P SATM+N Sbjct: 210 KYLVMDEADRLLDMDFGPALDKILKIIPTQRTTYLFSATMTN 251
>Q8XJQ0:RNH2_CLOPE Ribonuclease HII - Clostridium perfringens| Length = 272 Score = 35.0 bits (79), Expect = 2.2 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Frame = +2 Query: 1703 DEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHVIRNSFHQFQYEKA 1882 D K ++ + D++ +S+ LN L + E + ++ SF ++Y Sbjct: 32 DNKAQIKELADLLKEDKRKNVSSLGNRLEKNLNNLIKEEERVKNMYLFDKSFGDYKYVAG 91 Query: 1883 LPEVVQK--ITKLENEATLLDSSGENDLAEYHKLGLDISELEKKIMSEIIRPERALLYLV 2056 + EV + + + A +LDSS +D+ Y +SE +++ +SEII+ E+AL Y + Sbjct: 92 VDEVGRGPLAGPIVSAAVILDSSDLDDIILYINDSKKLSEHKREELSEIIK-EKALSYSI 150
>P79703:JUNB_CYPCA Transcription factor jun-B - Cyprinus carpio (Common carp)| Length = 308 Score = 35.0 bits (79), Expect = 2.2 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Frame = +2 Query: 2468 EEPELVDLVHKLDGLEQKLCSHPLNKSDQSEQQLSWYQRKAELNHEIQQLKSKMRD---- 2635 EEP+ V +H D CS P + D Q+ +RK L + + K + R Sbjct: 202 EEPQTVPDMHSSD------CSPPTSPIDMENQERIKAERK-RLRNRLAATKCRKRKLERI 254 Query: 2636 SQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAACLIDTGDELLITELM 2788 S+L++ LKN + L + D V QLK + +++G +L++T M Sbjct: 255 SRLEEKVKVLKNDNAGLSNTASVLRDQVAQLKQKVLRHMNSGCQLMLTSKM 305
>Q7L2E3:DHX30_HUMAN Putative ATP-dependent RNA helicase DHX30 - Homo sapiens (Human)| Length = 1194 Score = 35.0 bits (79), Expect = 2.2 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 18/167 (10%) Frame = +2 Query: 476 LDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKAL 640 +DP + + +E++ V++S T GKT + E + + VI T P + Sbjct: 436 VDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRIS 495 Query: 641 SNQKYRELSQEFS-----DVGLMTGDVTLQPN--ATCLVMTTEILRAMLYRGSEVIKEVG 799 + + +S E +VG + P+ L T IL L + + ++ V Sbjct: 496 AVSVAQRVSHELGPSLRRNVGFQVRLESKPPSRGGALLFCTVGILLRKL-QSNPSLEGVS 554 Query: 800 WVIFDEIHYMKDRERGVVWEESIVFLP------PAIKMVFLSATMSN 922 VI DE+H ER V + ++ L PA+++V +SAT N Sbjct: 555 HVIVDEVH-----ERDVNTDFLLILLKGLQRLNPALRLVLMSATGDN 596
>Q4P0G6:CWC21_USTMA Pre-mRNA-splicing factor CWC21 - Ustilago maydis (Smut fungus)| Length = 348 Score = 35.0 bits (79), Expect = 2.2 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 7/108 (6%) Frame = +3 Query: 306 SRSRCLARLPSVRISPGRASMRSLSPTATICPRMRPYMGPFQTLRLMGRWPRHTRFSLTP 485 +RSR ++ S R S AS RS PT PR ++ + + R +R L+ Sbjct: 220 ARSRSASQDSSARSSSSHASPRS--PT----PRTTSHVASYSSYSSRSRSRSRSRSPLSH 273 Query: 486 SRASRSRAWSGMNLSWSRLTPLQGRRPSLS-------TPLQCRSETSR 608 SR+SRSR+ S +PL R S S +P +C S SR Sbjct: 274 SRSSRSRSRSRSRSRSRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSR 321
>A1CR32:RRP3_ASPCL ATP-dependent rRNA helicase rrp3 - Aspergillus clavatus| Length = 473 Score = 34.7 bits (78), Expect = 2.9 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 16/166 (9%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRE 661 P Q+ SI ++ ++ A T +GKTA I + DK + + L A + + + Sbjct: 78 PIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSFFGLVL-APTRELAFQ 136 Query: 662 LSQEFSDVG--------LMTGDVTLQPNATCLVMTTEILRAMLYRGSE--------VIKE 793 +SQ F +G ++ G + + + L I+ A R + ++ Sbjct: 137 ISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRT 196 Query: 794 VGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATE 931 + +++ DE + D + G + ++ + LP + SATMS+ E Sbjct: 197 LKYLVMDEADRLLDMDFGPLLDKILKILPRERRTFLFSATMSSKVE 242
>Q5R607:DHX30_PONPY Putative ATP-dependent RNA helicase DHX30 - Pongo pygmaeus| (Orangutan) Length = 1194 Score = 34.7 bits (78), Expect = 2.9 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 18/167 (10%) Frame = +2 Query: 476 LDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKAL 640 +DP + + +E++ V++S T GKT + E + + VI T P + Sbjct: 436 VDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRIS 495 Query: 641 SNQKYRELSQEFS-----DVGLMTGDVTLQP--NATCLVMTTEILRAMLYRGSEVIKEVG 799 + + +S E +VG + P L T IL L + + ++ V Sbjct: 496 AVSVAQRVSHELGPSLRRNVGFQVRLESKPPARGGALLFCTVGILLRKL-QSNPSLEGVS 554 Query: 800 WVIFDEIHYMKDRERGVVWEESIVFLP------PAIKMVFLSATMSN 922 VI DE+H ER V + ++ L PA+++V +SAT N Sbjct: 555 HVIVDEVH-----ERDVNTDFLLILLKGLQRLNPALRLVLMSATGDN 596
>Q0UK12:RRP3_PHANO ATP-dependent rRNA helicase RRP3 - Phaeosphaeria nodorum (Septoria| nodorum) Length = 546 Score = 34.3 bits (77), Expect = 3.8 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 17/167 (10%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRE 661 P Q+ SI + ++ A T +GKTA I + DK + Y + A + + + Sbjct: 140 PIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQA-YFGLIMAPTRELAYQ 198 Query: 662 LSQEFSDVG--------LMTGDVTLQPNATCLVMTTEILRAMLYRGSE--------VIKE 793 +SQ+ +G + G + + P A L I+ A R + +K Sbjct: 199 ISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRLLDHLENTKGFSLKH 258 Query: 794 VGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFL-SATMSNATE 931 + +++ DE + D + G ++ LP + +L SATMS+ E Sbjct: 259 LKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHTYLFSATMSSKVE 305
>A2RB17:RRP3_ASPNG ATP-dependent rRNA helicase rrp3 - Aspergillus niger| Length = 467 Score = 34.3 bits (77), Expect = 3.8 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 19/209 (9%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRE 661 P Q SI + ++ A T +GKTA I + +K + + L Y + Sbjct: 73 PIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLVLAPTRELAY-Q 131 Query: 662 LSQEFSDVGLMTG---------------DVTLQPNATCLVMTT-EILRAMLYRGSEVIKE 793 +S+ F +G G ++L +V T +L + ++ Sbjct: 132 ISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLENTKGFSLRN 191 Query: 794 VGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCH 973 + +++ DE + D + G + ++ + LP + SATMS+ E + + Sbjct: 192 LKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSSKVESLQRASLSNPLRVS 251 Query: 974 VVYTDFR--PTPLQHYVF-PIGGSGLYLV 1051 V + ++ T LQ Y+F P LYLV Sbjct: 252 VSTSKYQTVSTLLQSYLFIPQKHKDLYLV 280
>Q12389:DBP10_YEAST ATP-dependent RNA helicase DBP10 - Saccharomyces cerevisiae| (Baker's yeast) Length = 995 Score = 34.3 bits (77), Expect = 3.8 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 17/168 (10%) Frame = +2 Query: 473 QLDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKA 637 Q P Q +I + ++ ++ A T +GKTA + E + S + R + SP + Sbjct: 159 QPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRE 218 Query: 638 LSNQKYRELSQ-----EFSDVGLMTGDVTLQPNATCLVMTTEILRA----MLYRGSEV-- 784 L+ Q + E V L+TG +L+ ++ +++ A L+ E+ Sbjct: 219 LAMQTFNVFKDFARGTELRSV-LLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNL 277 Query: 785 -IKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNA 925 +K V +V+FDE + + E + LP + + SAT+ N+ Sbjct: 278 DLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLLFSATLPNS 325
>A4R5B8:DBP10_MAGGR ATP-dependent RNA helicase DBP10 - Magnaporthe grisea (Rice blast| fungus) (Pyricularia grisea) Length = 914 Score = 34.3 bits (77), Expect = 3.8 Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 17/169 (10%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKALSN 646 P Q SI + V+ A T +GKTA + E A S R R + SP + L+ Sbjct: 115 PIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIERLRAHSARVGARALIMSPSRELAL 174 Query: 647 QKYRELSQ-----EFSDVGLMTGDVT------LQPNATCLVMTTEILRAMLYRGSEVIKE 793 Q + + + + V L+ GD + N ++ T + S + Sbjct: 175 QTLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTNPDIIIATPGRFLHLKVEMSLDLSS 234 Query: 794 VGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNA-TEFA 937 + +V+FDE + + E + LPP+ + + SAT+ + EFA Sbjct: 235 IKYVVFDEADRLFEMGFATQLTEILHSLPPSRQTLLFSATLPRSLVEFA 283
>Q9UQX7:RAS1_CANAL Ras-like protein 1 precursor - Candida albicans (Yeast)| Length = 290 Score = 33.9 bits (76), Expect = 4.9 Identities = 14/64 (21%), Positives = 33/64 (51%) Frame = +2 Query: 2543 KSDQSEQQLSWYQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVL 2722 K ++E+Q Q++ N + Q + +D+Q +F +++ N + + G + +DG++ Sbjct: 171 KIAEAEKQQQQQQQQQNANQQGQDQYGQQKDNQQSQFNNQINNNNNTSAVNGGVSSDGII 230 Query: 2723 QLKG 2734 G Sbjct: 231 DQNG 234
>Q60528:MUC1_MESAU Mucin-1 precursor - Mesocricetus auratus (Golden hamster)| Length = 676 Score = 33.9 bits (76), Expect = 4.9 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 15/98 (15%) Frame = +2 Query: 245 SKRKAPELSSEDNSSAVVLHEQEPLPGSTAKRQNLARSCIHE---------------VAV 379 S AP SS NS+ +H P T+ NLA + +H V Sbjct: 243 SGSSAPPTSSVVNSATTPVHSGSSAP-PTSSAVNLATTPVHSGSSTPATNSTTDSATTPV 301 Query: 380 PNGYDLSKDEAVHGTLSNPAFNGEMAKTYPFQLDPFQS 493 P G + EA+ G+ + P NG + T L P S Sbjct: 302 PPGSSMQTTEAISGSANTPIHNGSLVPTTSSALVPTTS 339
>Q6CIR0:DBP10_KLULA ATP-dependent RNA helicase DBP10 - Kluyveromyces lactis (Yeast)| (Candida sphaerica) Length = 973 Score = 33.9 bits (76), Expect = 4.9 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 18/174 (10%) Frame = +2 Query: 473 QLDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKA 637 Q P Q +I + + ++ A T +GKTA + E S + R + SP + Sbjct: 148 QPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRE 207 Query: 638 LSNQKYRELSQEFSDVG-----LMTGDVTLQPNATCLVMTTEILRA----MLYRGSEV-- 784 L+ Q +R + +EFS L+TG +L+ ++ +++ A L+ E+ Sbjct: 208 LAIQTHR-VFKEFSKGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLHLKVEMNL 266 Query: 785 -IKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATM-SNATEFAE 940 +K V +V+FDE + + E +V P + + SAT+ S+ +FA+ Sbjct: 267 DLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPTNRQTLLFSATLPSSLVDFAK 320
>Q6FNA2:DBP10_CANGA ATP-dependent RNA helicase DBP10 - Candida glabrata (Yeast)| (Torulopsis glabrata) Length = 969 Score = 33.9 bits (76), Expect = 4.9 Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 18/174 (10%) Frame = +2 Query: 473 QLDPFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKA 637 Q P Q +I + +N ++ A T +GKTA + E S + R I SP + Sbjct: 137 QPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRE 196 Query: 638 LSNQKYRELSQEFS-----DVGLMTGDVTLQPNATCLVMTTEILRA----MLYRGSEV-- 784 L+ Q + + +EFS L+TG +L+ ++ +++ A L+ E+ Sbjct: 197 LAMQTH-SVFKEFSRGTHLRSVLLTGGDSLEDQFGMMMTNPDVIIATPGRFLHLKVEMNL 255 Query: 785 -IKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATM-SNATEFAE 940 +K V + +FDE + + E + LP + + + SAT+ ++ +FA+ Sbjct: 256 DLKSVEYAVFDEADRLFEMGFQEQLNELLAALPSSRQTLLFSATLPTSLVDFAK 309
>Q9UTN6:SNF21_SCHPO SNF2-family ATP-dependent chromatin remodeling factor snf21 -| Schizosaccharomyces pombe (Fission yeast) Length = 1199 Score = 33.5 bits (75), Expect = 6.5 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%) Frame = -3 Query: 796 NFLDHLGAPIKHRPQDF--CCHDQASSIWL------KRDITSHQSNIRELLTKLPVLLI- 644 ++LD L A +K + F +D+ + K D + NIRE++T+ P +L+ Sbjct: 355 HYLDSLAAAVKVQQSQFGESAYDEDMDRRMNPEDDRKIDYYNVAHNIREVVTEQPSILVG 414 Query: 643 --TKSLQRRGVYHPLLVSERHCNGVLSD 566 K Q RG+ + + H NG+L+D Sbjct: 415 GKLKEYQLRGLQWMISLYNNHLNGILAD 442
>A3LS22:RRP3_PICST ATP-dependent rRNA helicase RRP3 - Pichia stipitis (Yeast)| Length = 484 Score = 33.5 bits (75), Expect = 6.5 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 15/165 (9%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQRVIY---TSPLKALSNQK 652 P QS +I + ++ A T +GKTA I S + Q + +P + L+ Q Sbjct: 96 PIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELAYQI 155 Query: 653 YRELSQEFSDVGLMT----GDVTLQPNATCLVMTTEILRAMLYRGSE--------VIKEV 796 S +G+ T G + + A L+ I+ A R + +K + Sbjct: 156 KETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKGFSLKML 215 Query: 797 GWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATE 931 + + DE + D E G V ++ + +P SATM+N E Sbjct: 216 KYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLFSATMTNKIE 260
>P34498:MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1| - Caenorhabditis elegans Length = 1131 Score = 33.5 bits (75), Expect = 6.5 Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 11/156 (7%) Frame = +2 Query: 509 LERNESVLVSAHTSAGKTA-IAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFS-D 682 + N V++ T +GKT +A+Y + F D + T P + + R ++ E D Sbjct: 454 IRENNVVIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQPRRVAAMSVARRVADEMGVD 513 Query: 683 VGLMTG------DVTLQPNATCLVMTTEILRAMLYRGSEVIKEVGWVIFDEIHYMK---D 835 +G G D T + + +LR L GS + + +I DE H D Sbjct: 514 LGQDVGYAIRFEDCTSEKTIIKYMTDGILLRECLGDGS--LDQYSAIIMDEAHERSLNTD 571 Query: 836 RERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEW 943 G++ E ++ +K++ SATM +A +FA++ Sbjct: 572 VLFGLLRE--VIAKRADLKLIVTSATM-DADKFADF 604
>P70569:MYO5B_RAT Myosin-Vb - Rattus norvegicus (Rat)| Length = 1846 Score = 33.1 bits (74), Expect = 8.4 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 10/57 (17%) Frame = +2 Query: 512 ERNESVLVSAHTSAGKTAIAEYAI---------AMSFRDKQRVIYTSP-LKALSNQK 652 E+N+S++VS + AGKT A+YA+ A +++V+ +SP ++A+ N K Sbjct: 154 EKNQSIIVSGESGAGKTVSAKYAMRYFATVGGSASDTNIEEKVLASSPIMEAIGNAK 210
>P21271:MYO5B_MOUSE Myosin-Vb - Mus musculus (Mouse)| Length = 1818 Score = 33.1 bits (74), Expect = 8.4 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 10/57 (17%) Frame = +2 Query: 512 ERNESVLVSAHTSAGKTAIAEYAI---------AMSFRDKQRVIYTSP-LKALSNQK 652 E+N+S++VS + AGKT A+YA+ A +++V+ +SP ++A+ N K Sbjct: 154 EKNQSIIVSGESGAGKTVSAKYAMRYFATVGGSASDTNIEEKVLASSPIMEAIGNAK 210
>Q9ULV0:MYO5B_HUMAN Myosin-Vb - Homo sapiens (Human)| Length = 1849 Score = 33.1 bits (74), Expect = 8.4 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 10/57 (17%) Frame = +2 Query: 512 ERNESVLVSAHTSAGKTAIAEYAI---------AMSFRDKQRVIYTSP-LKALSNQK 652 E+N+S++VS + AGKT A+YA+ A +++V+ +SP ++A+ N K Sbjct: 154 EKNQSIIVSGESGAGKTVSAKYAMRYFATVGGSASETNIEEKVLASSPIMEAIGNAK 210
>Q7S9J4:DBP10_NEUCR ATP-dependent RNA helicase dbp-10 - Neurospora crassa| Length = 934 Score = 33.1 bits (74), Expect = 8.4 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 18/170 (10%) Frame = +2 Query: 482 PFQSISIACLERNESVLVSAHTSAGKTA-----IAEYAIAMSFRDKQRVIYTSPLKALSN 646 P Q +I + + V+ A T +GKTA + E S R R + SP + L+ Sbjct: 124 PIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSRALIMSPSRELAL 183 Query: 647 QKYRELSQ-----EFSDVGLMTGDVTLQPNATCLVMTTEILRA----MLYRGSEV---IK 790 Q + + + + V L+ GD +L+ + +I+ A L+ E+ + Sbjct: 184 QTLKVVKELGRGTDLKTVLLVGGD-SLEEQFGMMASNPDIIIATPGRFLHLKVEMNLSLA 242 Query: 791 EVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATM-SNATEFA 937 + +V+FDE + + E + LPP+ + + SAT+ S+ EFA Sbjct: 243 SIKYVVFDEADRLFEMGFATELTEILHALPPSRQTLLFSATLPSSLVEFA 292
>A5DZT7:DBP10_LODEL ATP-dependent RNA helicase DBP10 - Lodderomyces elongisporus| (Yeast) (Saccharomyces elongisporus) Length = 948 Score = 33.1 bits (74), Expect = 8.4 Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 18/174 (10%) Frame = +2 Query: 473 QLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQ----RVIYTSPLKAL 640 Q P Q SI + N V+ A T +GKTA + + + R + SP + L Sbjct: 143 QPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIEKLKLRSPSGVRAVILSPSREL 202 Query: 641 SNQKYRELSQEFS------DVGLMTGDVTLQPNATCLVMTTEIL----RAMLYRGSEV-- 784 + Q Y+++ +EFS + L+ GD +L+ + ++ +I+ L+ E+ Sbjct: 203 ALQTYKQV-KEFSHGTNLQSIVLIGGD-SLEEDFGKMMTKPDIIVCTPGRFLHLKVEMQY 260 Query: 785 -IKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNA-TEFAE 940 + V +++FDE + + E ++ LP + + SAT+ + EFA+ Sbjct: 261 DLMSVQYIVFDEADRLFEMGFAEQLNELLLALPSNRQSLLFSATLPRSLVEFAK 314
>Q5ANB2:DBP10_CANAL ATP-dependent RNA helicase DBP10 - Candida albicans (Yeast)| Length = 908 Score = 33.1 bits (74), Expect = 8.4 Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 18/174 (10%) Frame = +2 Query: 473 QLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAIAMSFRDKQ----RVIYTSPLKAL 640 Q P Q +I + V+ A T +GKTA + + +Q R + SP + L Sbjct: 121 QPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERLKSRQPGGVRAVILSPSREL 180 Query: 641 SNQKYRELSQEFS------DVGLMTGDVTLQPNATCLVMTTEIL----RAMLYRGSEV-- 784 + Q Y+++ +EFS + L+ GD +L+ + + ++ +I+ L+ E+ Sbjct: 181 ALQTYKQV-KEFSHGTNLQSIVLIGGD-SLEEDFSKMMTKPDIIVCTPGRFLHLKVEMQY 238 Query: 785 -IKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNA-TEFAE 940 + V +++FDE + + E + LP + + SAT+ + +FA+ Sbjct: 239 DLMTVQYIVFDEADRLFEMGFAEQLNELLASLPSNRQSLLFSATLPRSLVDFAK 292
>Q7TMA5:APOB_RAT Apolipoprotein B-100 precursor - Rattus norvegicus (Rat)| Length = 4743 Score = 33.1 bits (74), Expect = 8.4 Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 11/200 (5%) Frame = +2 Query: 2576 YQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAACLID 2755 YQ + ++ ++Q L++++ + +Q+ ELK + L + H+D L R + +I+ Sbjct: 2223 YQIRIQIQEKLQHLRTQIHNIDIQQLAAELKQQIEALDVPMHLDQLRTAILFQRISVIIE 2282 Query: 2756 TG--------DELLITELM--FNGTFNDL-DHHQVASVVSCFVPCEKSSEQIRLRNELSK 2902 ++ +TE + F +L + ++V + V +KS E + R LS+ Sbjct: 2283 RVKYFVMNLIEDFKVTEKINTFRVIVRELIEKYEVDRQIQ--VLMDKSIE-LAHRYSLSE 2339 Query: 2903 PMMQLSEAARKIAEVQRECKLDVNVEEYVESTCKPYLMDVIYCWSKGATFGEVIEMTDIF 3082 P+ +LS ++I KL +++ VE W K +F +IE Sbjct: 2340 PLQKLSNVLQQIEIKDYYDKLVGFIDDTVE-------------WIKAVSFKNIIE----- 2381 Query: 3083 EGSIIRLVRRLDEFLNQLKA 3142 L R +D + +LKA Sbjct: 2382 -----ELNRLIDMSVKKLKA 2396 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 615,211,973 Number of extensions: 13473868 Number of successful extensions: 38299 Number of sequences better than 10.0: 95 Number of HSP's gapped: 38152 Number of HSP's successfully gapped: 140 Length of query: 1188 Length of database: 100,686,439 Length adjustment: 125 Effective length of query: 1063 Effective length of database: 66,399,564 Effective search space: 70582736532 Effective search space used: 70582736532 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
