No.
Definition
Score (bits)
E Value
1 ref|NM_001067715.1| Oryza sativa (japonica cultivar-group) Os08g...
101
1e-17
2 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
101
1e-17
3 dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic D...
101
1e-17
4 dbj|AP004746.3| Oryza sativa (japonica cultivar-group) genomic D...
64
2e-06
5 emb|AM229678.1| Escherichia coli colibactin polyketide biosynthe...
44
2.1
6 gb|CP000247.1| Escherichia coli 536, complete genome
44
2.1
7 gb|CP000243.1| Escherichia coli UTI89, complete genome
44
2.1
8 gb|AY260902.1| Rhodospirillum centenum che2 gene cluster, comple...
44
2.1
9 gb|AC112257.5| Mus musculus BAC clone RP23-43A18 from 16, comple...
44
2.1
10 gb|AC009468.3| Homo sapiens BAC clone GS1-278J22 from 7, complet...
44
2.1
11 gb|AE014075.1| Escherichia coli CFT073, complete genome
44
2.1
12 emb|BX927218.17| Zebrafish DNA sequence from clone DKEY-14O18 in...
44
2.1
13 gb|AC161815.4| Mus musculus BAC clone RP23-353C21 from chromosom...
44
2.1
14 emb|BX005216.10| Zebrafish DNA sequence from clone CH211-286O21,...
44
2.1
15 emb|CR760815.1| Xenopus tropicalis finished cDNA, clone TTpA006g14
44
2.1
16 gb|AC183805.2| Pan troglodytes BAC clone CH251-9E14 from chromos...
42
8.3
17 gb|AC183592.2| Pan troglodytes BAC clone CH251-733I16 from chrom...
42
8.3
18 ref|XM_969181.1| PREDICTED: Tribolium castaneum similar to Proba...
42
8.3
19 gb|AC109266.24| Mus musculus chromosome 16, clone RP23-176C2, co...
42
8.3
20 gb|AY049008.1| Homo sapiens mitochondrial ceramidase gene, compl...
42
8.3
21 gb|AC142323.1| Pan troglodytes BAC clone RP43-72N8 from 7, compl...
42
8.3
22 gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, compl...
42
8.3
23 gb|AC104304.2| Homo sapiens chromosome 3 clone RP11-509I21, comp...
42
8.3
24 gb|AC069444.17| Homo sapiens 3 BAC RP11-169N13 (Roswell Park Can...
42
8.3
25 emb|AL713986.10| Mouse DNA sequence from clone RP23-142G13 on ch...
42
8.3
26 gb|AC105391.1| Homo sapiens BAC clone RP11-311D14 from 4, comple...
42
8.3
27 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
42
8.3
28 gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genom...
42
8.3
29 emb|AL954360.3| Human DNA sequence from clone RP11-98I6 on chrom...
42
8.3
30 emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chro...
42
8.3
31 emb|AL450382.7| Human DNA sequence from clone RP11-56A21 on chro...
42
8.3
32 emb|AL022238.1|HS1042K10 Human DNA sequence from clone RP5-1042K...
42
8.3
33 emb|BX511128.8| Zebrafish DNA sequence from clone DKEY-56M19 in ...
42
8.3
34 gb|AC106772.3| Homo sapiens chromosome 5 clone RP11-310P5, compl...
42
8.3
35 gb|AC084611.1|CBRG44D16 Caenorhabditis briggsae cosmid G44D16, c...
42
8.3
36 emb|BX004979.8| Zebrafish DNA sequence from clone DKEY-121H18 in...
42
8.3
37 gb|U89254.1|BTU89254 Bos taurus retina specific RGS protein (RET...
42
8.3
38 emb|AL954166.9| Zebrafish DNA sequence from clone DKEYP-120B11 i...
42
8.3
>dbj|AP008214.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
Length = 28434780
Score = 101 bits (51), Expect = 1e-17
Identities = 147/179 (82%)
Strand = Plus / Minus
Query: 1050 tgtcagggattggtctgagctcccactcgatgtgctttctgcaatcttcatgaaacttgg 1109
|||||| |||||||| || |||||| ||||| ||||||| | || |||||||| |||||
Sbjct: 5447395 tgtcagagattggtccgatctcccaaccgatgcgctttctaccattttcatgaagcttgg 5447336
Query: 1110 gaccattgagattcttatgggtgcgggacttgtgtgccgctcatggctggtgacagccaa 1169
|| ||||||| | || |||||||| || |||||||||| |||||| ||| | || ||
Sbjct: 5447335 gagcattgaggtcctgatgggtgcaggccttgtgtgccattcatggttggcagctgcgaa 5447276
Query: 1170 gtcccctgagttgtggcgttttgtggacatgacgcgacagaagctggttttctcaaagg 1228
||| |||||| ||||||||| ||||||||||| || || ||| |||||||||||||||
Sbjct: 5447275 gtcacctgagctgtggcgttccgtggacatgactcgtcataaggtggttttctcaaagg 5447217
Score = 99.6 bits (50), Expect = 4e-17
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 1669 gccttcgccatagcagagagcttgcatgagttgcggctccttcagatggcaggctacggc 1728
||||| ||||||||||| | | |||| ||| | ||||| |||||||| |||| || |
Sbjct: 5435537 gcctttgccatagcagaaaacatgcacgagctacggcttcttcagatttcaggtaacaac 5435478
Query: 1729 ctgaccaacaaaggggtatacgccatccttgaaggctgcccccacctcgagttcctcgac 1788
||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||
Sbjct: 5435477 ctgaccaacaaaggggtgtacgccatccttgatggctgcccccaccttgagtgcctcgac 5435418
Query: 1789 ct 1790
||
Sbjct: 5435417 ct 5435416
Score = 95.6 bits (48), Expect = 6e-16
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 1249 atggcaaaggtggccatagatcgctctgatggacagatggaatcattctgggctcagaag 1308
||||| |||||||| ||||| |||||| | ||| ||||||| ||||||| ||||||||||
Sbjct: 5447196 atggcgaaggtggctatagaccgctctcaaggaaagatggagtcattcttggctcagaag 5447137
Query: 1309 tttgtcactagcgaactcctgaattacattgc 1340
||||| |||||||||||| || ||||||||||
Sbjct: 5447136 tttgttactagcgaactcttggattacattgc 5447105
Score = 91.7 bits (46), Expect = 1e-14
Identities = 142/174 (81%)
Strand = Plus / Minus
Query: 1054 agggattggtctgagctcccactcgatgtgctttctgcaatcttcatgaaacttgggacc 1113
||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||
Sbjct: 5442223 agggattggtctgagctcccagtggatgcactttctgcaatcttcacgaaacttgggact 5442164
Query: 1114 attgagattcttatgggtgcgggacttgtgtgccgctcatggctggtgacagccaagtcc 1173
||||||| || |||||||| | ||||||||| ||| ||| ||| | | |||||
Sbjct: 5442163 gttgagatcctaatgggtgcaagctttgtgtgccactcttggttggcagcttcaaagtca 5442104
Query: 1174 cctgagttgtggcgttttgtggacatgacgcgacagaagctggttttctcaaag 1227
||||| ||||||| || ||||||||||| || || ||| || |||||||||||
Sbjct: 5442103 cctgaactgtggcggttcgtggacatgacacgccacaaggtgattttctcaaag 5442050
Score = 89.7 bits (45), Expect = 4e-14
Identities = 120/145 (82%)
Strand = Plus / Minus
Query: 1084 ctttctgcaatcttcatgaaacttgggaccattgagattcttatgggtgcgggacttgtg 1143
||||||||| ||||||||||||||||||| |||||||||| |||||||| | |||||
Sbjct: 5436502 ctttctgcagtcttcatgaaacttgggactgttgagattctgatgggtgctagctttgtg 5436443
Query: 1144 tgccgctcatggctggtgacagccaagtcccctgagttgtggcgttttgtggacatgacg 1203
|||| ||||||| ||| | | | ||||| ||||| ||||||| || |||||||||||
Sbjct: 5436442 tgccactcatggttggcggcttcaaagtcacctgaactgtggcgattcgtggacatgaca 5436383
Query: 1204 cgacagaagctggttttctcaaagg 1228
|| || ||| || ||||||||||||
Sbjct: 5436382 cgccacaaggtgattttctcaaagg 5436358
Score = 79.8 bits (40), Expect = 4e-11
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 1264 atagatcgctctgatggacagatggaatcattctgggctcagaagtttgtcactagcgaa 1323
||||||||||| ||||||||||| || ||||||||||| ||||||||||||||| | |||
Sbjct: 5442013 atagatcgctccgatggacagattgagtcattctgggcccagaagtttgtcactggtgaa 5441954
Query: 1324 ctcctgaattacattg 1339
||| || |||| ||||
Sbjct: 5441953 ctcttggattatattg 5441938
Score = 75.8 bits (38), Expect = 6e-10
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 1669 gccttcgccatagcagagagcttgcatgagttgcggctccttcagatggcaggctacggc 1728
|||||||| |||||||| | | |||||||||| ||||| || ||||| ||||| | |
Sbjct: 5440770 gccttcgcgatagcagaaaacatgcatgagttacggcttctgcagattgcaggtcataac 5440711
Query: 1729 ctgaccaacaaaggggtatacgccatccttgaaggctgcccccacctcgagttcctcgac 1788
|||||| | | |||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct: 5440710 ctgaccgagataggggtgcgcgccatccttgatggctgcccccacctcgagtgcctcgac 5440651
Query: 1789 ct 1790
||
Sbjct: 5440650 ct 5440649
Score = 73.8 bits (37), Expect = 2e-09
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 1249 atggcaaaggtggccatagatcgctctgatggacagatggaatcattctgggctcagaag 1308
|||||||| | ||| ||||| ||||| ||||||| |||||| || |||||||||||||||
Sbjct: 5436337 atggcaaaagcggcaatagaccgctccgatggacggatggagtcgttctgggctcagaag 5436278
Query: 1309 tttgtcactagcgaactcctgaattacat 1337
||||| ||| | |||||| || |||||||
Sbjct: 5436277 tttgttacttgtgaactcttggattacat 5436249
Score = 65.9 bits (33), Expect = 6e-07
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 1728 cctgaccaacaaaggggtatacgccatccttgaaggctgcccccacctcgagt 1780
|||||||||||||||||| | |||||||| || |||||||||||||||||||
Sbjct: 5446078 cctgaccaacaaaggggttcatgccatcctcgatggctgcccccacctcgagt 5446026
Score = 63.9 bits (32), Expect = 2e-06
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 1106 ttgggaccattgagattcttatgggtgcgggacttgtgtgccgctcatggctggtgacag 1165
||||| ||||||||||||| |||||||| || |||||||||| ||||||| ||| | | |
Sbjct: 5475007 ttggggccattgagattctgatgggtgctggccttgtgtgccactcatggttggaggctg 5474948
Query: 1166 ccaagtcccctgagttgtggcgttttgtggacatgacgcg 1205
||||| |||||| |||||| | | | | |||||||||||
Sbjct: 5474947 ccaaggtccctgacttgtggagatctctcgacatgacgcg 5474908
Score = 46.1 bits (23), Expect = 0.53
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1507 cgcccagagctgaaacgtctaagagtccatttgcc 1541
|||||| |||||||||||||| |||||||| ||||
Sbjct: 5435687 cgcccacagctgaaacgtctacgagtccatatgcc 5435653
Score = 46.1 bits (23), Expect = 0.53
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1669 gccttcgccatagcagagagcttgcatgagttgcggctccttcagat 1715
||||||||||| ||||||||| |||| ||| |||| ||||||||||
Sbjct: 5473816 gccttcgccattgcagagagcatgcacgagctgcgtatccttcagat 5473770
Score = 44.1 bits (22), Expect = 2.1
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1357 ttgaagagcattcggctcatcg 1378
||||||||||||||||||||||
Sbjct: 5446677 ttgaagagcattcggctcatcg 5446656
>dbj|AP005441.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBa0056O06
Length = 151038
Score = 101 bits (51), Expect = 1e-17
Identities = 147/179 (82%)
Strand = Plus / Minus
Query: 1050 tgtcagggattggtctgagctcccactcgatgtgctttctgcaatcttcatgaaacttgg 1109
|||||| |||||||| || |||||| ||||| ||||||| | || |||||||| |||||
Sbjct: 117206 tgtcagagattggtccgatctcccaaccgatgcgctttctaccattttcatgaagcttgg 117147
Query: 1110 gaccattgagattcttatgggtgcgggacttgtgtgccgctcatggctggtgacagccaa 1169
|| ||||||| | || |||||||| || |||||||||| |||||| ||| | || ||
Sbjct: 117146 gagcattgaggtcctgatgggtgcaggccttgtgtgccattcatggttggcagctgcgaa 117087
Query: 1170 gtcccctgagttgtggcgttttgtggacatgacgcgacagaagctggttttctcaaagg 1228
||| |||||| ||||||||| ||||||||||| || || ||| |||||||||||||||
Sbjct: 117086 gtcacctgagctgtggcgttccgtggacatgactcgtcataaggtggttttctcaaagg 117028
Score = 99.6 bits (50), Expect = 4e-17
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 1669 gccttcgccatagcagagagcttgcatgagttgcggctccttcagatggcaggctacggc 1728
||||| ||||||||||| | | |||| ||| | ||||| |||||||| |||| || |
Sbjct: 105348 gcctttgccatagcagaaaacatgcacgagctacggcttcttcagatttcaggtaacaac 105289
Query: 1729 ctgaccaacaaaggggtatacgccatccttgaaggctgcccccacctcgagttcctcgac 1788
||||||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||
Sbjct: 105288 ctgaccaacaaaggggtgtacgccatccttgatggctgcccccaccttgagtgcctcgac 105229
Query: 1789 ct 1790
||
Sbjct: 105228 ct 105227
Score = 95.6 bits (48), Expect = 6e-16
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 1249 atggcaaaggtggccatagatcgctctgatggacagatggaatcattctgggctcagaag 1308
||||| |||||||| ||||| |||||| | ||| ||||||| ||||||| ||||||||||
Sbjct: 117007 atggcgaaggtggctatagaccgctctcaaggaaagatggagtcattcttggctcagaag 116948
Query: 1309 tttgtcactagcgaactcctgaattacattgc 1340
||||| |||||||||||| || ||||||||||
Sbjct: 116947 tttgttactagcgaactcttggattacattgc 116916
Score = 91.7 bits (46), Expect = 1e-14
Identities = 142/174 (81%)
Strand = Plus / Minus
Query: 1054 agggattggtctgagctcccactcgatgtgctttctgcaatcttcatgaaacttgggacc 1113
||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||
Sbjct: 112034 agggattggtctgagctcccagtggatgcactttctgcaatcttcacgaaacttgggact 111975
Query: 1114 attgagattcttatgggtgcgggacttgtgtgccgctcatggctggtgacagccaagtcc 1173
||||||| || |||||||| | ||||||||| ||| ||| ||| | | |||||
Sbjct: 111974 gttgagatcctaatgggtgcaagctttgtgtgccactcttggttggcagcttcaaagtca 111915
Query: 1174 cctgagttgtggcgttttgtggacatgacgcgacagaagctggttttctcaaag 1227
||||| ||||||| || ||||||||||| || || ||| || |||||||||||
Sbjct: 111914 cctgaactgtggcggttcgtggacatgacacgccacaaggtgattttctcaaag 111861
Score = 89.7 bits (45), Expect = 4e-14
Identities = 120/145 (82%)
Strand = Plus / Minus
Query: 1084 ctttctgcaatcttcatgaaacttgggaccattgagattcttatgggtgcgggacttgtg 1143
||||||||| ||||||||||||||||||| |||||||||| |||||||| | |||||
Sbjct: 106313 ctttctgcagtcttcatgaaacttgggactgttgagattctgatgggtgctagctttgtg 106254
Query: 1144 tgccgctcatggctggtgacagccaagtcccctgagttgtggcgttttgtggacatgacg 1203
|||| ||||||| ||| | | | ||||| ||||| ||||||| || |||||||||||
Sbjct: 106253 tgccactcatggttggcggcttcaaagtcacctgaactgtggcgattcgtggacatgaca 106194
Query: 1204 cgacagaagctggttttctcaaagg 1228
|| || ||| || ||||||||||||
Sbjct: 106193 cgccacaaggtgattttctcaaagg 106169
Score = 79.8 bits (40), Expect = 4e-11
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 1264 atagatcgctctgatggacagatggaatcattctgggctcagaagtttgtcactagcgaa 1323
||||||||||| ||||||||||| || ||||||||||| ||||||||||||||| | |||
Sbjct: 111824 atagatcgctccgatggacagattgagtcattctgggcccagaagtttgtcactggtgaa 111765
Query: 1324 ctcctgaattacattg 1339
||| || |||| ||||
Sbjct: 111764 ctcttggattatattg 111749
Score = 75.8 bits (38), Expect = 6e-10
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 1669 gccttcgccatagcagagagcttgcatgagttgcggctccttcagatggcaggctacggc 1728
|||||||| |||||||| | | |||||||||| ||||| || ||||| ||||| | |
Sbjct: 110581 gccttcgcgatagcagaaaacatgcatgagttacggcttctgcagattgcaggtcataac 110522
Query: 1729 ctgaccaacaaaggggtatacgccatccttgaaggctgcccccacctcgagttcctcgac 1788
|||||| | | |||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct: 110521 ctgaccgagataggggtgcgcgccatccttgatggctgcccccacctcgagtgcctcgac 110462
Query: 1789 ct 1790
||
Sbjct: 110461 ct 110460
Score = 73.8 bits (37), Expect = 2e-09
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 1249 atggcaaaggtggccatagatcgctctgatggacagatggaatcattctgggctcagaag 1308
|||||||| | ||| ||||| ||||| ||||||| |||||| || |||||||||||||||
Sbjct: 106148 atggcaaaagcggcaatagaccgctccgatggacggatggagtcgttctgggctcagaag 106089
Query: 1309 tttgtcactagcgaactcctgaattacat 1337
||||| ||| | |||||| || |||||||
Sbjct: 106088 tttgttacttgtgaactcttggattacat 106060
Score = 65.9 bits (33), Expect = 6e-07
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 1728 cctgaccaacaaaggggtatacgccatccttgaaggctgcccccacctcgagt 1780
|||||||||||||||||| | |||||||| || |||||||||||||||||||
Sbjct: 115889 cctgaccaacaaaggggttcatgccatcctcgatggctgcccccacctcgagt 115837
Score = 63.9 bits (32), Expect = 2e-06
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 1106 ttgggaccattgagattcttatgggtgcgggacttgtgtgccgctcatggctggtgacag 1165
||||| ||||||||||||| |||||||| || |||||||||| ||||||| ||| | | |
Sbjct: 144818 ttggggccattgagattctgatgggtgctggccttgtgtgccactcatggttggaggctg 144759
Query: 1166 ccaagtcccctgagttgtggcgttttgtggacatgacgcg 1205
||||| |||||| |||||| | | | | |||||||||||
Sbjct: 144758 ccaaggtccctgacttgtggagatctctcgacatgacgcg 144719
Score = 46.1 bits (23), Expect = 0.53
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1507 cgcccagagctgaaacgtctaagagtccatttgcc 1541
|||||| |||||||||||||| |||||||| ||||
Sbjct: 105498 cgcccacagctgaaacgtctacgagtccatatgcc 105464
Score = 46.1 bits (23), Expect = 0.53
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1669 gccttcgccatagcagagagcttgcatgagttgcggctccttcagat 1715
||||||||||| ||||||||| |||| ||| |||| ||||||||||
Sbjct: 143627 gccttcgccattgcagagagcatgcacgagctgcgtatccttcagat 143581
Score = 44.1 bits (22), Expect = 2.1
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1357 ttgaagagcattcggctcatcg 1378
||||||||||||||||||||||
Sbjct: 116488 ttgaagagcattcggctcatcg 116467
>emb|AL589794.7 | Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the 3'
end of the gene for apobec-1 complementation factor (ACF)
(ASP), the gene for a novel protein similar to
N-acylsphingosine amidohydrolase (non-lysosomal ceramidase)
2 (ASAH2), the cathepsin L-like 2 (CTSLL2) pseudogene,
three novel pseudogenes (KIAA1553), a novel gene, a protein
geranylgeranyltransferase type I beta subunit (PGGT1B)
pseudogene and a CpG island, complete sequence
Length = 178899
Score = 42.1 bits (21), Expect = 8.3
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1095 cttcatgaaacttgggaccat 1115
|||||||||||||||||||||
Sbjct: 114042 cttcatgaaacttgggaccat 114062
>emb|AL954166.9 | Zebrafish DNA sequence from clone DKEYP-120B11 in linkage group 20,
complete sequence
Length = 186299
Score = 42.1 bits (21), Expect = 8.3
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 610 ttgcaaagtttctgagatgatagtg 634
||||||||||| |||||||||||||
Sbjct: 9692 ttgcaaagtttttgagatgatagtg 9716
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 336,181,536
Number of extensions: 17318310
Number of successful extensions: 86658
Number of sequences better than 10.0: 38
Number of HSP's gapped: 86654
Number of HSP's successfully gapped: 65
Length of query: 2178
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2155
Effective length of database: 18,503,978,556
Effective search space: 39876073788180
Effective search space used: 39876073788180
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)