>Q2UQ97:SLD2_ASPOR DNA replication regulator sld2 - Aspergillus oryzae|
          Length = 527
 Score = 37.0 bits (84), Expect = 0.14
 Identities = 21/93 (22%), Positives = 43/93 (46%)
 Frame = +2

Query: 20  PTHTQAPTSHQQPQTEAGNSAAKQGKKSSVLSSIPNFQQQMEKAGHEHVIGIPVSSTAIG 199
           P  ++     Q P +E  ++     +    L+++P  QQ    A  +   G+P +++   
Sbjct: 377 PVISKPKCESQLPASEDEDNTDNVDQSDDELAAVPETQQP--GASGDETNGVPDAASLHS 434

Query: 200 IEEPEFTSDAKYSTSARAGGKSGKFARGIKEHV 298
           I EPE  SD+ Y   ++   +S  F+  I++ +
Sbjct: 435 ISEPELDSDSDYEEQSKPPARSKSFSERIRDAI 467

>Q46084:ANFK_CLOHU Nitrogenase iron-iron protein beta chain - Clostridium hungatei|
          Length = 329

 Score = 35.8 bits (81), Expect = 0.31
 Identities = 27/80 (33%), Positives = 37/80 (46%)
 Frame = +1

Query: 199 HRGAGVHERCQVFDERPCRRQIGQVCSGHQRTCDSRPKVVRDREGQAVAGRKDHPGRRRG 378
           HRG+  H +C  F E P RR  G+  S  +         +R R  ++ A  + HP  R  
Sbjct: 226 HRGSDRHRQCPTFPE-PLRRHQGRRVSAEE---------IR-RSRRSSARPRSHPQYRH- 273

Query: 379 ESLPAVVRRGEGREAPQGLA 438
             LPA    G+G+  PQ LA
Sbjct: 274 --LPAEPEEGDGKPIPQSLA 291

>P55067:CSPG3_RAT Neurocan core protein precursor - Rattus norvegicus (Rat)|
          Length = 1257

 Score = 34.3 bits (77), Expect = 0.91
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 145  EGRT*ACDR--HPGQQHCYRHRGAGVHERCQVFDERPCRRQIGQVCSGH 285
            E  T  CDR  H  Q HCYR+     H R     ER CRR+ G + S H
Sbjct: 1023 EKDTEGCDRGWHKFQGHCYRYFA---HRRAWEDAERDCRRRAGHLTSVH 1068

>P55066:CSPG3_MOUSE Neurocan core protein precursor - Mus musculus (Mouse)|
          Length = 1268

 Score = 34.3 bits (77), Expect = 0.91
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 145  EGRT*ACDR--HPGQQHCYRHRGAGVHERCQVFDERPCRRQIGQVCSGH 285
            E  T  CDR  H  Q HCYR+     H R     ER CRR+ G + S H
Sbjct: 1034 EKDTEGCDRGWHKFQGHCYRYFA---HRRAWEDAERDCRRRAGHLTSVH 1079

>Q8IUA7:ABCA9_HUMAN ATP-binding cassette sub-family A member 9 - Homo sapiens (Human)|
          Length = 1624

 Score = 34.3 bits (77), Expect = 0.91
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +2

Query: 608 PSENQHRPEQKYVQLVTD----DGFEFWFMGFVSYQASLQHLEQAIAESHVV 751
           P   +HR    + Q V +    +G EFW  GFV++QA++      IA +H V
Sbjct: 147 PMMKEHRDHSAHCQAVNEKMKCEGSEFWEKGFVAFQAAINAAIIEIATNHSV 198

>Q5KVC9:HIS4_GEOKA 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]|
           imidazole-4-carboxamide isomerase - Geobacillus
           kaustophilus
          Length = 245

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
 Frame = +2

Query: 74  NSAAKQGKKSSVLSSIPNFQQQMEKAGHEHVIGIPVSSTAIGIEEPEFTSDAKYSTSAR- 250
           N  A+    S+ +S  P  ++ ++K G   VIGI      +  E    TS+ K     R 
Sbjct: 98  NGVARVILGSAAISDPPFVKKMLQKYGRRIVIGIDARDGFVATEGWLATSNVKAEELGRM 157

Query: 251 ---AGGKSGKFARGIKEHVTLGPKLYETVRGKLSLGARIIQAGGVEKV 385
              AG ++  F     +    GP +   VR   + G  +I +GGV  +
Sbjct: 158 LAEAGAETFIFTDIATDGTLSGPNIAAAVRLAEATGKEVIASGGVSSL 205

>Q5IS41:CSPG3_PANTR Neurocan core protein precursor - Pan troglodytes (Chimpanzee)|
          Length = 1321

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 145  EGRT*ACDR--HPGQQHCYRHRGAGVHERCQVFDERPCRRQIGQVCSGH 285
            E  T  CDR  H  Q HCYR+     H R     ER CRR+ G + S H
Sbjct: 1082 EKDTEGCDRGWHKFQGHCYRYFA---HRRAWEDAERDCRRRSGHLTSVH 1127

>O14594:CSPG3_HUMAN Neurocan core protein precursor - Homo sapiens (Human)|
          Length = 1321

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 145  EGRT*ACDR--HPGQQHCYRHRGAGVHERCQVFDERPCRRQIGQVCSGH 285
            E  T  CDR  H  Q HCYR+     H R     E+ CRR+ G + S H
Sbjct: 1082 EKDTEGCDRGWHKFQGHCYRYFA---HRRAWEDAEKDCRRRSGHLTSVH 1127

>Q6C8M8:ATG26_YARLI Sterol 3-beta-glucosyltransferase - Yarrowia lipolytica (Candida|
            lipolytica)
          Length = 1424

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 27/103 (26%), Positives = 43/103 (41%)
 Frame = +2

Query: 386  FRRWFAVEKGEKLLKASQCYLSTTAGPIAGVLFVSSERVAFRSDRSLELTSPKGDTVRVP 565
            F++ FA+   E+L+ +  C+L     P  G ++VS+  V FRS             +R  
Sbjct: 797  FQKRFALGTEERLIASYHCHLHRGGIPTYGKMYVSTNYVTFRS------------FLRTK 844

Query: 566  YKVAVPLRRVKAARPSENQHRPEQKYVQLVTDDGFEFWFMGFV 694
              + VPL+ V+ A                  D GF+F + G V
Sbjct: 845  TLMIVPLKVVENA----------------TKDSGFKFGYSGLV 871

>P21561:YGY3_HALSQ Hypothetical 50.6 kDa protein in the 5'region of gyrA and gyrB -|
           Haloferax sp. (strain Aa 2.2)
          Length = 437

 Score = 32.3 bits (72), Expect = 3.5
 Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
 Frame = +1

Query: 283 HQRTCDSRPKVVRDREGQAVAGRKDHPGRRRGESLP-----------AVVRRGEGREAPQ 429
           H R    R + VR REG   A   D   RRR  + P           A   RG  R    
Sbjct: 335 HHRHWRRRRRRVRHREGALPAAHPDDRRRRRRRAHPDAAAYASVPAHAPAHRGRLRVRGS 394

Query: 430 GLAV---LPVHHRRTDRRSALRIVGEGGLPQRPVAG 528
             AV   LP  H R D R        GG+ ++P AG
Sbjct: 395 TAAVPRPLPRQHLRRDGRGRAGPHHRGGMQRQPHAG 430

>Q8RC40:GATA_THETN Glutamyl-tRNA(Gln) amidotransferase subunit A - Thermoanaerobacter|
           tengcongensis
          Length = 488

 Score = 32.3 bits (72), Expect = 3.5
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = +2

Query: 149 AGHEHVIGIPVSSTAIGIEEPEFTSDAKYSTSARAGGKSGKF-----ARGIKEHVTLGPK 313
           AGH+     P+ ST++ IE+P++TS  K        G + +F       G+KE V    K
Sbjct: 230 AGHD-----PMDSTSVKIEKPDYTSYLKEDIKGLRIGVAKEFFGAGIEEGVKETVEKAIK 284

Query: 314 LYETVRGKLSLGARII 361
           ++E       LGA II
Sbjct: 285 VFE------DLGAEII 294

>Q5KK25:ATG26_CRYNE Sterol 3-beta-glucosyltransferase - Cryptococcus neoformans|
            (Filobasidiella neoformans)
          Length = 1585

 Score = 32.0 bits (71), Expect = 4.5
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +2

Query: 386  FRRWFAVEKGEKLLKASQCYLSTTAGPIAGVLFVSSERVAFRSDRSLELTSPKGDTVRVP 565
            FR +FA+   E+L+     YL     P++G  F+S+    FRS + L  T      + +P
Sbjct: 864  FRTFFALSDKEELIDHFPGYLYRVL-PVSGRFFISTNYFCFRSSQLLYKTKESFRLMIIP 922

Query: 566  YKVAVPLRRVKAAR 607
             +    L+  KA R
Sbjct: 923  IRDLYGLKAQKAFR 936

>Q9H6X5:CS044_HUMAN Uncharacterized protein C19orf44 - Homo sapiens (Human)|
          Length = 657

 Score = 31.6 bits (70), Expect = 5.9
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +2

Query: 38  PTSHQQPQTEAGNSAAKQGKKSSVLSSIPNFQQQMEKAGHEHVIGIPVSSTAIGIEEPEF 217
           PT+H +   +    A  +   SSV + +P   +  +K+G  HV  + V  TA+   +P F
Sbjct: 483 PTAHSKESLDRTLDALSESS-SSVKTDLPQTAESRKKSGR-HVTRVLVKDTAVQTPDPAF 540

Query: 218 TSD-AKYSTSARAGGKSG 268
           T +  K ++ A  G   G
Sbjct: 541 TYEWTKVASMAAMGPALG 558

>Q26307:ANA_DROME Protein anachronism precursor - Drosophila melanogaster (Fruit fly)|
          Length = 474

 Score = 31.6 bits (70), Expect = 5.9
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 11  APAPTHTQAPTSHQQPQTEAGNSAAK-QGKKSSVLSSIPNFQQQMEKAGHEH 163
           AP   H +   +HQQP++E+ ++  + + +   ++SS  N +QQME   + H
Sbjct: 388 APLVHHRRHHHNHQQPESESESAQLEAEIEAEELMSSASNSEQQMEPISNHH 439

>Q9V785:3BP5_DROME SH3 domain-binding protein 5-like - Drosophila melanogaster (Fruit|
           fly)
          Length = 476

 Score = 31.6 bits (70), Expect = 5.9
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
 Frame = +2

Query: 65  EAGNSAAKQGKKSSVLSSIPNFQQQMEKAGHEHVIGIPVSSTAIGIEEPEFTSDAKYSTS 244
           E G  A      SS L S+P+FQ ++EK  +  + G   S  ++G + P+  ++ +    
Sbjct: 240 EPGVGAELNSPTSSALPSLPDFQLELEKCDYPSIAG---SQMSLGAKTPQAAAETEDEED 296

Query: 245 ARAGGKSGK-FARGIKEHVTLGPKLYETVRGKLS-LGARIIQAG 370
           A    ++G    RG+ +   L     E +R K+  L  R I+ G
Sbjct: 297 ACDYDETGAGELRGVVDERDL-----EALRQKVKILAVRPIEGG 335

>P31079:PETR_RHOCA Protein petR - Rhodobacter capsulatus (Rhodopseudomonas capsulata)|
          Length = 237

 Score = 31.2 bits (69), Expect = 7.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 290 EHVTLGPKLYETVRGKLSLGARIIQAGGVEKVFRRWFAVEKGE 418
           ++++LGP  Y+  RG+LS G + ++    E    R FA   GE
Sbjct: 133 KYLSLGPLRYDLDRGELSQGDQPVRLTATEAALMRIFAAHAGE 175

>Q5WDI1:HIS4_BACSK 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]|
           imidazole-4-carboxamide isomerase - Bacillus clausii
           (strain KSM-K16)
          Length = 240

 Score = 31.2 bits (69), Expect = 7.7
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
 Frame = +2

Query: 122 PNFQQQM-EKAGHEHVIGIPVSSTAIGIEEPEFTSDAKY----STSARAGGKSGKFARGI 286
           P+F +QM  K G +  IGI      +  E    TS  K     +  AR G K+  F    
Sbjct: 112 PDFTKQMLAKYGEQMAIGIDARDGYVATEGWLETSHVKAEDLAAEMARFGAKTFIFTDIA 171

Query: 287 KEHVTLGPKLYETVRGKLSLGARIIQAGGVEKV 385
           ++ +  GP +   V    +  A +I +GGV  +
Sbjct: 172 RDGMLTGPNIEACVALSKAANANVIASGGVSSI 204

>O07401:HEMH_MYCAV Ferrochelatase - Mycobacterium avium|
          Length = 335

 Score = 31.2 bits (69), Expect = 7.7
 Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = +1

Query: 244 RPCRRQIGQVCSGHQRTCDSRPKVVRDREGQAVAGRKDHPGRRRGESLPAVVRR-GEGRE 420
           RP RR +     G     D R +   DR   A AGR +     R   L A+ RR GEG  
Sbjct: 38  RPRRRTLPAFRRG---VADQRHQPRADR---AAAGRPEPARLLRQPQLGALRRRHGEGHT 91

Query: 421 APQGLAVLPVHHRRTDRRSALRIVGEGGLP 510
             +  A   VHH R +R   L  V  G  P
Sbjct: 92  RQRDSACRGVHHLRLERLLQLHAVRRGHRP 121

>O77086:C3G_DROME Guanine nucleotide-releasing factor 2 - Drosophila melanogaster|
           (Fruit fly)
          Length = 1571

 Score = 31.2 bits (69), Expect = 7.7
 Identities = 41/186 (22%), Positives = 70/186 (37%), Gaps = 3/186 (1%)
 Frame = +2

Query: 14  PAPTHTQAPTSHQQPQTEAGNSAAKQGKKSSVLSSIPNFQQQMEKAGHEHVI-GIPVSST 190
           P PTH Q  + HQQ Q   G S+   G  +     +P        +GH++ + G  ++  
Sbjct: 214 PPPTH-QHHSQHQQLQGTPGGSSRVGGAGAGGGGGVPPAPPSAGSSGHKNSLKGTKLARR 272

Query: 191 AIGIEEPEFTSDAKYSTSARAGGKSGKFARGIKEHVTLGPKLYETV-RGKLSLGARIIQA 367
           A   ++      +   T+    G+S        +H T  P   E V R   +L   +   
Sbjct: 273 ARSFKDDLIEKISLMRTTNNTLGRSHSPHSPRTKHGTKAPPTTEEVLRSTQTLETHVKDI 332

Query: 368 GGVEKVFRRWFAVEKGEKLLKASQCYLSTTAGPIAGV-LFVSSERVAFRSDRSLELTSPK 544
               K FR     +K E L       L T A   + +  +  +E  A  S  +L++    
Sbjct: 333 SNALKHFRDVILKKKLEVLPGNGTVILETIASMYSVIQTYTLNENSAIMSSATLQVYQSL 392

Query: 545 GDTVRV 562
           G  +++
Sbjct: 393 GKLIKL 398


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 177,078,565
Number of extensions: 3943720
Number of successful extensions: 12993
Number of sequences better than 10.0: 19
Number of HSP's gapped: 12984
Number of HSP's successfully gapped: 19
Length of query: 359
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 245
Effective length of database: 69,416,809
Effective search space: 17007118205
Effective search space used: 17007118205
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)