ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf96d16 |
|---|---|
| Clone Library Name | barley_pub |
>Q767L8:MDC1_PIG Mediator of DNA damage checkpoint protein 1 - Sus scrofa (Pig)| Length = 2042 Score = 38.9 bits (89), Expect = 0.096 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Frame = -1 Query: 224 LLRPMPSHLPLHPQ*R-----PLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQT- 63 L P+PS P HP + P P Q+T R P++ +P +S P P+P+ Sbjct: 1043 LQNPLPSQSPKHPAPQSRLSPPPPPLEQSTPRTRPPQSQESPEPPFSSELDPPNPEPKVR 1102 Query: 62 ---------LPLEPHSDPPPSERGDPPVT 3 +PLE H P + G P T Sbjct: 1103 PQGSPPLSPIPLEAHPTSPTDQAGSPEPT 1131
>P14918:EXTN_MAIZE Extensin precursor - Zea mays (Maize)| Length = 267 Score = 37.4 bits (85), Expect = 0.28 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPR-----NYYPSQPWYSLSSRAPCPQPQTLPLE 51 P P+ P +P TP+ TY SP+ P+ P Y+ S + P P+P T P Sbjct: 141 PKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPTHPTPKPTPPTYTPSPKPPTPKP-TPPTY 199 Query: 50 PHSDPPPSERGDPP 9 S PP+ + PP Sbjct: 200 TPSPKPPTPKPTPP 213 Score = 36.6 bits (83), Expect = 0.48 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPR-------NYYPSQPWYSLSSRAPCPQPQTLP 57 P P+ P +P TP+ TY SP+ P+ P Y+ S + P P+P T P Sbjct: 88 PKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPTPKPTPPTYTPSPKPPTPKP-TPP 146 Query: 56 LEPHSDPPPSERGDPP 9 S PP+ + PP Sbjct: 147 TYTPSPKPPTPKPTPP 162 Score = 36.2 bits (82), Expect = 0.62 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = -1 Query: 197 PLHPQ*RPLTPRIQATTYPRSPR--NYYPSQPWYSLSSRAPCPQPQTLPLEPHSDPP--P 30 P P +P TP+ TY SP+ P+ P Y+ S + P P+P P PP P Sbjct: 115 PKPPATKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPTHP 174 Query: 29 SERGDPP 9 + + PP Sbjct: 175 TPKPTPP 181 Score = 36.2 bits (82), Expect = 0.62 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Frame = -1 Query: 197 PLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSDP----PP 30 P HP +P P + P +P+ P+ P Y+ S + P P+P P P PP Sbjct: 171 PTHPTPKPTPPTYTPSPKPPTPK---PTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPP 227 Query: 29 SERGDPP 9 + + PP Sbjct: 228 TPKPTPP 234 Score = 34.7 bits (78), Expect = 1.8 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 11/80 (13%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPR-------NYYPSQPWYSLSSRAPCPQPQTLP 57 P P+ P +P TP+ TY SP+ P+ P Y+ S + P P+P Sbjct: 51 PKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPTPKPTPPTYTPSPKPPTPKPTPPT 110 Query: 56 LEPHSDP----PPSERGDPP 9 P P PP+ + PP Sbjct: 111 YTPSPKPPATKPPTPKPTPP 130 Score = 33.9 bits (76), Expect = 3.1 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPR--NYYPSQPWYSLSSRAPCPQPQT-LPLEPH 45 P P+ P +P TP+ TY SP+ P+ P Y+ S + P +P T P P Sbjct: 176 PKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPTPKPTPPT 235 Query: 44 SDPPPSERGDPPVT 3 P P P T Sbjct: 236 YTPTPKPPATKPPT 249 Score = 33.5 bits (75), Expect = 4.0 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Frame = -1 Query: 197 PLHPQ*RPLTPRIQATTYPRSPR--NYYPSQPWYSLSSRAPCPQPQT-LPLEPHSDP--- 36 P P +P TP+ TY SP+ P+ P Y+ S + P +P T P P P Sbjct: 41 PKPPASKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPTPKPTPPTYTPSPK 100 Query: 35 PPSERGDPP 9 PP+ + PP Sbjct: 101 PPTPKPTPP 109 Score = 32.7 bits (73), Expect = 6.9 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 11/71 (15%) Frame = -1 Query: 188 PQ*RPLTPRIQATTYPRSPR-------NYYPSQPWYSLSSRAPCPQPQTLPLEPHSDP-- 36 P +P TP+ TY SP+ P+ P Y+ S + P P+P P P Sbjct: 23 PSPKPPTPKPTPPTYTPSPKPPASKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPA 82 Query: 35 --PPSERGDPP 9 PP+ + PP Sbjct: 83 TKPPTPKPTPP 93
>P21997:SSGP_VOLCA Sulfated surface glycoprotein 185 precursor - Volvox carteri| Length = 485 Score = 36.2 bits (82), Expect = 0.62 Identities = 24/69 (34%), Positives = 29/69 (42%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSDP 36 P P++ PL P +P T + + P SPR P P S P P P P P P Sbjct: 222 PAPNNSPLPPSPQP-TASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPP 280 Query: 35 PPSERGDPP 9 PP PP Sbjct: 281 PPPPPPPPP 289
>P13983:EXTN_TOBAC Extensin precursor - Nicotiana tabacum (Common tobacco)| Length = 620 Score = 36.2 bits (82), Expect = 0.62 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPC---PQPQTLPLEPH 45 P P++ P P P P P P Y P P YS +P P PQ PL P Sbjct: 444 PPPTYSPPPPTYSPPPPAYAQP--PPPPPTYSPPPPAYSPPPPSPIYSPPPPQVQPLPPT 501 Query: 44 SDPPPSER 21 PPP R Sbjct: 502 FSPPPPRR 509 Score = 33.5 bits (75), Expect = 4.0 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQAT--TYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEP-- 48 P P++LP P P P TY +SP P P YS P P P T P Sbjct: 364 PPPTYLPPPPPSSPPPPSFSPPPPTYEQSP----PPPPAYS----PPLPAPPTYSPPPPT 415 Query: 47 HSDPPPSERGDPPV 6 +S PPP+ PP+ Sbjct: 416 YSPPPPTYAQPPPL 429 Score = 32.7 bits (73), Expect = 6.9 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 2/73 (2%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPR--NYYPSQPWYSLSSRAPCPQPQTLPLEPHS 42 P PS+ P P P P P SP ++ P P Y S P LP P Sbjct: 357 PPPSYSPPPPTYLPPPP-------PSSPPPPSFSPPPPTYEQSPPPPPAYSPPLPAPPTY 409 Query: 41 DPPPSERGDPPVT 3 PPP PP T Sbjct: 410 SPPPPTYSPPPPT 422 Score = 32.7 bits (73), Expect = 6.9 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = -1 Query: 209 PSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEP-HSDPP 33 P++ P P P P TY P Y P P Y+ + P P P P P +S PP Sbjct: 431 PTYSPPPPAYSPPPP----PTYSPPPPTYSPPPPAYA---QPPPPPPTYSPPPPAYSPPP 483 Query: 32 PSERGDPP 9 PS PP Sbjct: 484 PSPIYSPP 491 Score = 32.3 bits (72), Expect = 9.0 Identities = 22/70 (31%), Positives = 27/70 (38%) Frame = -1 Query: 218 RPMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSD 39 +P P++ P P P P + Y P Y PS P P P P P P Sbjct: 277 QPSPTYSPPPPTYSPPPP---SPIYSPPPPAYSPSPP--------PTPTPTFSPPPPAYS 325 Query: 38 PPPSERGDPP 9 PPP+ PP Sbjct: 326 PPPTYSPPPP 335
>P25054:APC_HUMAN Adenomatous polyposis coli protein - Homo sapiens (Human)| Length = 2843 Score = 35.8 bits (81), Expect = 0.81 Identities = 19/69 (27%), Positives = 30/69 (43%) Frame = +2 Query: 1001 SKTLIQAGIGHDDMLDNIGFSLEPNCTRHSSQVAAPEDIEFLETVETTEPLARIAPADSS 1180 SK + G D+ L N P C H+S +++ DI+ + EP+ P DS Sbjct: 1937 SKDIPDRGAATDEKLQNFAIENTPVCFSHNSSLSSLSDIDQENNNKENEPIKETEPPDSQ 1996 Query: 1181 SKHGEVDAS 1207 + + AS Sbjct: 1997 GEPSKPQAS 2005
>Q4WTV7:INO80_ASPFU Putative DNA helicase ino80 - Aspergillus fumigatus (Sartorya| fumigata) Length = 1708 Score = 35.4 bits (80), Expect = 1.1 Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 20/82 (24%) Frame = -1 Query: 197 PLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWY---------------SLS-----SRAPC 78 P +PQ PR + P R+YYP+ Y SLS S AP Sbjct: 6 PYNPQSPTQQPRFPVYSPPNKNRSYYPNNDQYQQHAPQTPPAFAPQPSLSRSPHYSHAPS 65 Query: 77 PQPQTLPLEPHSDPPPSERGDP 12 P P TLP PPP +P Sbjct: 66 PLPATLPPLNGGAPPPGHHPEP 87
>P50767:VE2_HPV21 Regulatory protein E2 - Human papillomavirus type 21| Length = 503 Score = 35.0 bits (79), Expect = 1.4 Identities = 23/85 (27%), Positives = 44/85 (51%) Frame = +2 Query: 1175 SSSKHGEVDASQELALTPLTANYQGNDHDSVHSPGGISSPERASANSRAIVPVTPVDSSA 1354 S + H EV+ ++E P+T++ + SPGG +A +N+ + P T DS++ Sbjct: 180 SRTGHWEVNVNKETVFAPVTSSTPPD------SPGG-----QADSNTSSTTPATTTDSTS 228 Query: 1355 GAIVPANKAKRSAEQGQRRIRRPFS 1429 +++++ +G+R RRP S Sbjct: 229 RLSSTRKQSQQTNTKGRRYGRRPSS 253
>P10323:ACRO_HUMAN Acrosin precursor - Homo sapiens (Human)| Length = 421 Score = 35.0 bits (79), Expect = 1.4 Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = -1 Query: 215 PMPSHLPLH--PQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHS 42 P+ +HLP + P RPL PR A PR P PS P P P P PL P Sbjct: 319 PISAHLPWYFQPPPRPLPPRPPAAQ-PRPP----PSPP--------PPPPPPASPLPPPP 365 Query: 41 DPPP 30 PPP Sbjct: 366 PPPP 369
>P58840:ACROL_HUMAN Putative acrosin-like protease - Homo sapiens (Human)| Length = 232 Score = 35.0 bits (79), Expect = 1.4 Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = -1 Query: 215 PMPSHLPLH--PQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHS 42 P+ +HLP + P RPL PR A PR P PS P P P P PL P Sbjct: 130 PLSAHLPWYFQPPPRPLPPRPPAAQ-PRPP----PSPP--------PPPPPPPSPLPPPP 176 Query: 41 DPPP 30 PPP Sbjct: 177 PPPP 180
>P08775:RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 - Mus musculus (Mouse)| Length = 1970 Score = 34.7 bits (78), Expect = 1.8 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = -1 Query: 209 PSHLPLHPQ*RPLTPRI--QATTYPRSPRNYYPSQPWYSLSSRAPCP-QPQTLPLEPHSD 39 PS+ P P P +PR Q+ TY S +Y PS P YS +S P P P P Sbjct: 1795 PSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYT 1854 Query: 38 P 36 P Sbjct: 1855 P 1855
>P24928:RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 - Homo sapiens (Human)| Length = 1970 Score = 34.7 bits (78), Expect = 1.8 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = -1 Query: 209 PSHLPLHPQ*RPLTPRI--QATTYPRSPRNYYPSQPWYSLSSRAPCP-QPQTLPLEPHSD 39 PS+ P P P +PR Q+ TY S +Y PS P YS +S P P P P Sbjct: 1795 PSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYT 1854 Query: 38 P 36 P Sbjct: 1855 P 1855
>P11414:RPB1_CRIGR DNA-directed RNA polymerase II subunit RPB1 - Cricetulus griseus| (Chinese hamster) Length = 467 Score = 34.7 bits (78), Expect = 1.8 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = -1 Query: 209 PSHLPLHPQ*RPLTPRI--QATTYPRSPRNYYPSQPWYSLSSRAPCP-QPQTLPLEPHSD 39 PS+ P P P +PR Q+ TY S +Y PS P YS +S P P P P Sbjct: 292 PSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYT 351 Query: 38 P 36 P Sbjct: 352 P 352
>Q6V9I6:HDT1_SOLCH Histone deacetylase HDT1 - Solanum chacoense (Chaco potato)| Length = 269 Score = 34.7 bits (78), Expect = 1.8 Identities = 28/89 (31%), Positives = 37/89 (41%) Frame = +2 Query: 1127 ETVETTEPLARIAPADSSSKHGEVDASQELALTPLTANYQGNDHDSVHSPGGISSPERAS 1306 ET + EP R ADS++K D +L T +G H + P +S S Sbjct: 180 ETPKKAEPAKR-RKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKTPKS 238 Query: 1307 ANSRAIVPVTPVDSSAGAIVPANKAKRSA 1393 A S P S GA+ +KAK SA Sbjct: 239 AGSHHCKPCNRSFGSEGALDSHSKAKHSA 267
>P04726:GDA6_WHEAT Alpha/beta-gliadin clone PW1215 precursor - Triticum aestivum| (Wheat) Length = 296 Score = 34.3 bits (77), Expect = 2.4 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 10/79 (12%) Frame = -1 Query: 218 RPMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPW---------YSLSSRAPCPQPQ 66 +P P + P PQ + P +Q +P + + P QP+ P PQPQ Sbjct: 27 QPQPQN-PSQPQPQGQVPLVQQQQFPGQQQQFPPQQPYPQPQPFPSQQPYLQLQPFPQPQ 85 Query: 65 TLPLE-PHSDPPPSERGDP 12 P + P+ PPP P Sbjct: 86 PFPPQLPYPQPPPFSPQQP 104
>Q5IS70:ATN1_PANTR Atrophin-1 - Pan troglodytes (Chimpanzee)| Length = 1186 Score = 33.9 bits (76), Expect = 3.1 Identities = 23/65 (35%), Positives = 26/65 (40%) Frame = -1 Query: 221 LRPMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHS 42 L P P LP P P + S S S SS +P P Q LP PHS Sbjct: 351 LAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHS 410 Query: 41 DPPPS 27 PPP+ Sbjct: 411 FPPPT 415
>P54259:ATN1_HUMAN Atrophin-1 - Homo sapiens (Human)| Length = 1185 Score = 33.9 bits (76), Expect = 3.1 Identities = 23/65 (35%), Positives = 26/65 (40%) Frame = -1 Query: 221 LRPMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHS 42 L P P LP P P + S S S SS +P P Q LP PHS Sbjct: 352 LAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHS 411 Query: 41 DPPPS 27 PPP+ Sbjct: 412 FPPPT 416
>Q2M2I8:AAK1_HUMAN AP2-associated protein kinase 1 - Homo sapiens (Human)| Length = 863 Score = 33.9 bits (76), Expect = 3.1 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Frame = -1 Query: 218 RPMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQ-------PQTL 60 +P P LP+ P LTPR +AT P +QP S P PQ PQT Sbjct: 376 QPNPGILPIQPA---LTPRKRATVQPPPQAAGSSNQPGLLASVPQPKPQAPPSQPLPQTQ 432 Query: 59 PLEPHSDPPPSE 24 +P + P P + Sbjct: 433 AKQPQAPPTPQQ 444
>P43582:YFB0_YEAST WW domain-containing protein YFL010C - Saccharomyces cerevisiae| (Baker's yeast) Length = 211 Score = 33.5 bits (75), Expect = 4.0 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = -1 Query: 170 TPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSDPPPSERGDPPVT 3 TP++QA + PR Y P QP Y + PQ P+ P + P + G P T Sbjct: 78 TPQVQAGAQAQQPRYYQPQQPQYPQYPQQQRYYPQQAPM-PAAAPQQAYYGTAPST 132
>P36787:VE2_HPV25 Regulatory protein E2 - Human papillomavirus type 25| Length = 502 Score = 33.5 bits (75), Expect = 4.0 Identities = 22/85 (25%), Positives = 42/85 (49%) Frame = +2 Query: 1175 SSSKHGEVDASQELALTPLTANYQGNDHDSVHSPGGISSPERASANSRAIVPVTPVDSSA 1354 S++ H EV +++ TP+T++ SPGG +A +N+ + P T S Sbjct: 180 SNTGHWEVKVNKDTVFTPVTSS------TPPESPGG-----QADSNTSSKTPTTDTASRL 228 Query: 1355 GAIVPANKAKRSAEQGQRRIRRPFS 1429 ++++++ +G+R RRP S Sbjct: 229 SPTGSGERSQQTSTKGRRYERRPSS 253
>P35074:RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 - Caenorhabditis briggsae| Length = 1853 Score = 33.5 bits (75), Expect = 4.0 Identities = 21/58 (36%), Positives = 26/58 (44%) Frame = -1 Query: 209 PSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSDP 36 PS+ P PQ P +P+ P SP Y PS P Y+ +S PQ P P P Sbjct: 1736 PSYSPTSPQYSPTSPQYS----PSSP-TYTPSSPTYNPTSPRAFSSPQYSPTSPTYSP 1788
>Q8NG57:ELOA3_HUMAN RNA polymerase II transcription factor SIII subunit A3 - Homo| sapiens (Human) Length = 546 Score = 33.5 bits (75), Expect = 4.0 Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 12/101 (11%) Frame = -1 Query: 299 PKEAASHQH----------PWGREDCTCQGRSC*RLLRPMPSHLPLHPQ*RPLTPRIQAT 150 P+E+AS Q WG + RS PSH P H + TP Q Sbjct: 90 PEESASRQRFGEALQEREKAWGFPENATAPRS--------PSHSPEHRRTARRTPPGQQR 141 Query: 149 TYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLE--PHSDPP 33 +PRSP S RA +P+ P + PH DPP Sbjct: 142 PHPRSP----------SREPRAERKRPRMAPADSGPHRDPP 172
>Q9S740:AGP19_ARATH Lysine-rich arabinogalactan protein 19 precursor - Arabidopsis| thaliana (Mouse-ear cress) Length = 222 Score = 33.5 bits (75), Expect = 4.0 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQ-ATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSD 39 P P+ P P + P I AT P+ P++ S P S +P P P + P P S Sbjct: 73 PPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAPTVSPPPVSPPPAPTSPPPTPAS- 131 Query: 38 PPPSERGDPP 9 PPP+ PP Sbjct: 132 PPPAPASPPP 141
>O00401:WASL_HUMAN Neural Wiskott-Aldrich syndrome protein - Homo sapiens (Human)| Length = 505 Score = 33.1 bits (74), Expect = 5.3 Identities = 23/72 (31%), Positives = 25/72 (34%), Gaps = 3/72 (4%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWY---SLSSRAPCPQPQTLPLEPH 45 P PS P P R P P YP P S S P P P L + P Sbjct: 312 PPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPV 371 Query: 44 SDPPPSERGDPP 9 + PPP PP Sbjct: 372 APPPPPPPPPPP 383
>Q04206:TF65_HUMAN Transcription factor p65 - Homo sapiens (Human)| Length = 551 Score = 33.1 bits (74), Expect = 5.3 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = -1 Query: 188 PQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSDPPPS 27 PQ P T + Y P +PS S+ AP P PQ LP P P P+ Sbjct: 346 PQPYPFTSSLSTINYDEFPTMVFPSGQISQASALAPAP-PQVLPQAPAPAPAPA 398
>P16356:RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 - Caenorhabditis elegans| Length = 1852 Score = 33.1 bits (74), Expect = 5.3 Identities = 21/58 (36%), Positives = 26/58 (44%) Frame = -1 Query: 209 PSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSDP 36 PS+ P PQ P +P+ P SP Y PS P Y+ +S PQ P P P Sbjct: 1735 PSYSPTSPQYSPTSPQYS----PSSP-TYTPSSPTYNPTSPRGFSSPQYSPTSPTYSP 1787
>P14314:GLU2B_HUMAN Glucosidase 2 subunit beta precursor - Homo sapiens (Human)| Length = 528 Score = 33.1 bits (74), Expect = 5.3 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 1/107 (0%) Frame = +2 Query: 1100 AAPEDIEFLETVETTEPLARIAPADSSSKHGEVDASQELALTPLTANYQGNDHDSVHSPG 1279 A P D+ + TEP P SS E + +E A + + DS +P Sbjct: 284 ALPTDLPAPSAPDLTEPKEEQPPVPSSPTEEEEEEEEE---EEEEAEEEEEEEDSEEAPP 340 Query: 1280 GISSPERASANSRAIVPVTPVDSSAGAIV-PANKAKRSAEQGQRRIR 1417 +S P+ AS +P P D A + A +A+ E+ +R ++ Sbjct: 341 PLSPPQPASPAEEDKMP--PYDEQTQAFIDAAQEARNKFEEAERSLK 385
>P24152:EXTN_SORBI Extensin precursor - Sorghum bicolor (Sorghum) (Sorghum vulgare)| Length = 283 Score = 33.1 bits (74), Expect = 5.3 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = -1 Query: 209 PSHLPLHPQ*RPLTPRIQA--TTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLE--PHS 42 P+ P HP+ P TP QA TY +P+ PS P AP P T P+ P S Sbjct: 224 PTSTPTHPKPTPHTPYPQAHPPTYKPAPK---PSPP-------APTPPTYTPPVSHTPSS 273 Query: 41 DPPP 30 PPP Sbjct: 274 PPPP 277
>P49454:CENPF_HUMAN Centromere protein F - Homo sapiens (Human)| Length = 3210 Score = 33.1 bits (74), Expect = 5.3 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +3 Query: 696 LKNLQNQMQREPQRLMQENHMLLLWKQTRAATQRHSMDPVNRTI 827 LK QN+MQ+E L+QEN L+ +T+ Q +P+ ++ Sbjct: 1135 LKEEQNKMQKEVNDLLQENEQLMKVMKTKHECQNLESEPIRNSV 1178
>P41479:Y091_NPVAC Hypothetical 24.1 kDa protein in LEF4-P33 intergenic region -| Autographa californica nuclear polyhedrosis virus (AcMNPV) Length = 224 Score = 32.7 bits (73), Expect = 6.9 Identities = 20/63 (31%), Positives = 24/63 (38%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSDP 36 P P+ +P P P I T P P + P P P P P +P P P Sbjct: 67 PPPTPIPPTPTPTPPPTPIPPTPTPTPPPSPIPPTP-------TPSPPPSPIPPTPTPSP 119 Query: 35 PPS 27 PPS Sbjct: 120 PPS 122 Score = 32.3 bits (72), Expect = 9.0 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSDP 36 P P+ +P P P I T P P + P P P P P +P P P Sbjct: 80 PPPTPIPPTPTPTPPPSPIPPTPTPSPPPSPIPPTP-------TPSPPPSPIPPTPTPSP 132 Query: 35 PPS--ERGDP 12 PPS G+P Sbjct: 133 PPSPSPLGEP 142
>P27237:OPDA_SALTY Oligopeptidase A - Salmonella typhimurium| Length = 680 Score = 32.7 bits (73), Expect = 6.9 Identities = 14/27 (51%), Positives = 21/27 (77%) Frame = +2 Query: 1574 ASISPQQRRGEPVPQDLLDRVLAAQSY 1654 A IS GEP+P++LLD++LAA++Y Sbjct: 516 AFISGHYETGEPLPKELLDKMLAAKNY 542
>P27298:OPDA_ECOLI Oligopeptidase A - Escherichia coli| Length = 680 Score = 32.7 bits (73), Expect = 6.9 Identities = 14/27 (51%), Positives = 21/27 (77%) Frame = +2 Query: 1574 ASISPQQRRGEPVPQDLLDRVLAAQSY 1654 A IS GEP+P++LLD++LAA++Y Sbjct: 516 AFISGHYETGEPLPKELLDKMLAAKNY 542
>Q02817:MUC2_HUMAN Mucin-2 precursor - Homo sapiens (Human)| Length = 5179 Score = 32.7 bits (73), Expect = 6.9 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 4/75 (5%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYP----RSPRNYYPSQPWYSLSSRAPCPQPQTLPLEP 48 P P+ P P P+TP TT P SP + P + + P P T P Sbjct: 1494 PPPTTTPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTST 1553 Query: 47 HSDPPPSERGDPPVT 3 + PP + PP T Sbjct: 1554 TTLPPTTTPSPPPTT 1568 Score = 32.3 bits (72), Expect = 9.0 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 7/78 (8%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAP--CPQPQTL-----P 57 P P+ P P P+TP TT P + PS P + ++ P P P T P Sbjct: 1612 PPPTTTPSPPTTTPITPPTSTTTLPPTTT---PSPPPTTTTTPPPTTTPSPPTTTTPSPP 1668 Query: 56 LEPHSDPPPSERGDPPVT 3 + + PPP+ P+T Sbjct: 1669 ITTTTTPPPTTTPSSPIT 1686
>Q8NHY3:GA2L2_HUMAN GAS2-like protein 2 - Homo sapiens (Human)| Length = 880 Score = 32.7 bits (73), Expect = 6.9 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Frame = +2 Query: 1112 DIEFLETVETTEPLARIAPADSSSKHGEVDASQELALTPLTANYQGNDHDSVHSPGGIS- 1288 D+E + T P + P S K G++ A Q T + + +G V GG Sbjct: 669 DLEAWKAAPTGSPKPAVTPGPGSLK-GKLGARQSGPRTKASLSAKGTHMRKVPPQGGQDC 727 Query: 1289 SPERASANSRAIVPVTPVDSSAGAIVPANKAKRSAEQGQRRIRRP 1423 S SA+ A P +P+D ++ +KAK +G+R +R+P Sbjct: 728 SASTVSASPEAPTP-SPLDPNS------DKAKACLSKGRRTLRKP 765
>Q91590:TEFF1_XENLA Tomoregulin-1 precursor - Xenopus laevis (African clawed frog)| Length = 370 Score = 32.3 bits (72), Expect = 9.0 Identities = 24/94 (25%), Positives = 36/94 (38%) Frame = +2 Query: 296 LVSSDSTGEMPLYGGKIHRSVSFPRGPKGGAECSVDRENXXXXXKSSGCTHSSTATNRGF 475 + S GE GG++H+ S K GAEC D + GC + + F Sbjct: 137 IASGSGEGEYEGSGGEVHKKHSKCGVCKFGAECDEDAGDV-------GCVCNIDCSGHNF 189 Query: 476 RPNCTADQSRVKKFLACKYRKVAPARMHKGDLSY 577 P C D S C R+ + R + D+ + Sbjct: 190 NPVCATDGSSYSN--PCLVREASCLRQEQIDVKH 221
>P04052:RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 - Drosophila melanogaster| (Fruit fly) Length = 1887 Score = 32.3 bits (72), Expect = 9.0 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 17/83 (20%) Frame = -1 Query: 209 PSHLPLHPQ*RPLTPRIQATTYPRSPR--NYYPSQPWYSLSSRAPCPQPQTLPLEP---- 48 PS+ P P P +P T+ SP NY P P YS +S PQ P P Sbjct: 1690 PSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQ 1749 Query: 47 -----------HSDPPPSERGDP 12 +S P PS G P Sbjct: 1750 TGVKYSPTSPTYSPPSPSYDGSP 1772
>Q05859:FMN1B_MOUSE Formin-1, isoform IV - Mus musculus (Mouse)| Length = 1206 Score = 32.3 bits (72), Expect = 9.0 Identities = 23/70 (32%), Positives = 28/70 (40%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSDP 36 P P PL P PL P + P +P P P +S P P P P+ P P Sbjct: 650 PPPLPPPLIPPPPPLPPGLGPL--PPAP----PIPPVCPVSPPPPPPPPPPTPVPPSDGP 703 Query: 35 PPSERGDPPV 6 PP PP+ Sbjct: 704 PPPPPPPPPL 713
>Q05860:FMN1A_MOUSE Formin-1, isoforms I/II/III - Mus musculus (Mouse)| Length = 1468 Score = 32.3 bits (72), Expect = 9.0 Identities = 23/70 (32%), Positives = 28/70 (40%) Frame = -1 Query: 215 PMPSHLPLHPQ*RPLTPRIQATTYPRSPRNYYPSQPWYSLSSRAPCPQPQTLPLEPHSDP 36 P P PL P PL P + P +P P P +S P P P P+ P P Sbjct: 876 PPPLPPPLIPPPPPLPPGLGPL--PPAP----PIPPVCPVSPPPPPPPPPPTPVPPSDGP 929 Query: 35 PPSERGDPPV 6 PP PP+ Sbjct: 930 PPPPPPPPPL 939
>Q8BYH8:CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 - Mus musculus (Mouse)| Length = 2885 Score = 32.3 bits (72), Expect = 9.0 Identities = 24/97 (24%), Positives = 40/97 (41%) Frame = +2 Query: 1385 RSAEQGQRRIRRPFSXXXXXXXXXXXXXXGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTL 1564 R+ E+G+R I R S GR K + DN K +TY LK+K K Sbjct: 535 RAKERGERNIPRVMSPENFPSASVEGKEEKRGRRMKSKPKDRDNKKPKTYSKLKEKTKIG 594 Query: 1565 VHTASISPQQRRGEPVPQDLLDRVLAAQSYWSQQQAK 1675 ++ + +R +L D +Q + +Q ++ Sbjct: 595 KLIITLGKKHKRRNESSDELSDAEQRSQHTFKEQHSQ 631 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 390,943,276 Number of extensions: 8449649 Number of successful extensions: 26552 Number of sequences better than 10.0: 38 Number of HSP's gapped: 26067 Number of HSP's successfully gapped: 51 Length of query: 773 Length of database: 100,686,439 Length adjustment: 121 Effective length of query: 652 Effective length of database: 67,496,744 Effective search space: 44007877088 Effective search space used: 44007877088 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
