ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf89k17 |
|---|---|
| Clone Library Name | barley_pub |
>Q5JT82:KLF17_HUMAN Krueppel-like factor 17 - Homo sapiens (Human)| Length = 389 Score = 33.1 bits (74), Expect = 4.4 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Frame = +3 Query: 834 IIKDARQYLDEKPRSCSREACAFS-GTYGALRRHARRVHPTTRPADVDPSRR---RAWHR 1001 ++ R++ E+P SC+ E+C++S LRRH RVH RP D R R+ H Sbjct: 300 LVSHQRKHTGERPYSCNWESCSWSFFRSDELRRH-MRVHTRYRPYKCDQCSREFMRSDHL 358 Query: 1002 LENQREY 1022 ++Q+ + Sbjct: 359 KQHQKTH 365
>O50385:FOLD_MYCTU Bifunctional protein folD [Includes: Methylenetetrahydrofolate| dehydrogenase - Mycobacterium tuberculosis Length = 281 Score = 32.7 bits (73), Expect = 5.8 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Frame = -2 Query: 1094 TFNDVISKHN*PRHSRPDCTHYVTILPLVLQAVPRATP*RIHISRPCCGVHPPGMSTERT 915 T N+ I + N + PDCT Y+ LPL A R+ ++ G+HP + Sbjct: 77 TLNETIDELN----ANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLG-RLV 131 Query: 914 IGT-RKCACFPRAASWLL 864 +GT C PR LL Sbjct: 132 LGTPAPLPCTPRGIVHLL 149
>Q73UA5:FOLD_MYCPA Bifunctional protein folD [Includes: Methylenetetrahydrofolate| dehydrogenase - Mycobacterium paratuberculosis Length = 281 Score = 32.7 bits (73), Expect = 5.8 Identities = 22/75 (29%), Positives = 30/75 (40%) Frame = -2 Query: 1088 NDVISKHN*PRHSRPDCTHYVTILPLVLQAVPRATP*RIHISRPCCGVHPPGMSTERTIG 909 ND I + N + P+CT Y+ LPL Q A R+ + G+HP + Sbjct: 79 NDTIDELN----ANPECTGYIVQLPLPKQLDENAALERVDPDKDADGLHPTNLGRLVLNN 134 Query: 908 TRKCACFPRAASWLL 864 C PR LL Sbjct: 135 PAPLPCTPRGIVHLL 149
>Q7TWN0:FOLD_MYCBO Bifunctional protein folD [Includes: Methylenetetrahydrofolate| dehydrogenase - Mycobacterium bovis Length = 281 Score = 32.7 bits (73), Expect = 5.8 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Frame = -2 Query: 1094 TFNDVISKHN*PRHSRPDCTHYVTILPLVLQAVPRATP*RIHISRPCCGVHPPGMSTERT 915 T N+ I + N + PDCT Y+ LPL A R+ ++ G+HP + Sbjct: 77 TLNETIDELN----ANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLG-RLV 131 Query: 914 IGT-RKCACFPRAASWLL 864 +GT C PR LL Sbjct: 132 LGTPAPLPCTPRGIVHLL 149
>Q96C55:ZN524_HUMAN Zinc finger protein 524 - Homo sapiens (Human)| Length = 264 Score = 32.3 bits (72), Expect = 7.5 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 4/77 (5%) Frame = +3 Query: 777 SNLNQLMCPLC-RGAVKGWEIIKDARQYLDEKPRSCSREACAFSGTYGALRRHARRVHPT 953 + L CPLC R + E+ R + E+P C F+ LRRHA+R HP Sbjct: 165 AGLRPFRCPLCPRRFREAGELAHHHRVHSGERPYQCPICRLRFTEA-NTLRRHAKRKHPE 223 Query: 954 TRPADV---DPSRRRAW 995 + DP W Sbjct: 224 AMGVPLCAPDPGSEPPW 240
>Q5XPI4:RN123_HUMAN E3 ubiquitin-protein ligase RNF123 - Homo sapiens (Human)| Length = 1314 Score = 32.3 bits (72), Expect = 7.5 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = +3 Query: 264 SLSKMPNPEKKLFRMPSADAEIAALHKEW-DDARCPICMDHPHNAVLLLCSSHDKGCRSY 440 S ++ E+ L + SA A+ AA ++ CPIC HP +AV C K C++ Sbjct: 1220 SADELAQVEQMLAHLTSASAQAAAASLPTSEEDLCPICYAHPISAVFQPCG--HKSCKAC 1277 Query: 441 ICDTSYRHSNC 473 I + +C Sbjct: 1278 INQHLMNNKDC 1288
>P28167:ZFH2_DROME Zinc finger protein 2 - Drosophila melanogaster (Fruit fly)| Length = 3005 Score = 32.3 bits (72), Expect = 7.5 Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 12/142 (8%) Frame = -1 Query: 570 VKHFGYLYLQARKSLA-VMNYPCSSLSFS*TCLGNLSVYSLYHICR---ICILCHENYTT 403 + HF L++ S V Y C S + L+ + LYH R C C N+ + Sbjct: 1493 ISHFQDLHMSLIISERHVYKYRCKQCSLAFKTQEKLTTHMLYHSMRDATKCSFCQRNFRS 1552 Query: 402 --------EVQHCEDGPCKLDTEHHPIPCAVQQSRXXXXXXXXXXXXXXXSWTSCSELNL 247 E H EDG T P + S + S + L Sbjct: 1553 TQALQKHMEQAHAEDGTPSTRTNSPQTPMLSTEETHKHLLAESHAVEREVSGSDVSPIEL 1612 Query: 246 EEHPNRQSGSPKPLRKALNSET 181 E H N+++ P +L+S++ Sbjct: 1613 ETHLNKETRHLSPTPMSLDSQS 1634
>Q39RG3:RECO_GEOMG DNA repair protein recO - Geobacter metallireducens (strain GS-15 /| ATCC 53774 / DSM 7210) Length = 244 Score = 32.3 bits (72), Expect = 7.5 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -1 Query: 1263 PTDSDASAFSGPLMSLLARLLSADHCSSYGTERTLSTETRFG 1138 P SD F +++L +S DHC+S G E + E R G Sbjct: 128 PLPSDRRFFEANFLNILGYRISLDHCASCGVELPATAERRTG 169
>Q6ZMY3:SPOC1_HUMAN SPOC domain-containing protein 1 - Homo sapiens (Human)| Length = 1216 Score = 32.0 bits (71), Expect = 9.8 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 13/84 (15%) Frame = -3 Query: 1060 PGIADLIALIMS-------------PYSRWFSRRCHARRLDGSTSAGLVVGCTRLACLRS 920 PG+ +L+A++ S P R ++RL S L C R C RS Sbjct: 80 PGVLELLAVVQSRGSMLAPGLHMQLPSVPTQGRALTSKRLQVSLCDILDDSCPRKLCSRS 139 Query: 919 AP*VPENAHASREQLLGFSSRYCL 848 A +PE A A RE+L G CL Sbjct: 140 AG-LPERALACRERLAGVEEVSCL 162
>Q09728:CUF1_SCHPO Metal-binding regulatory protein cuf1 - Schizosaccharomyces pombe| (Fission yeast) Length = 411 Score = 32.0 bits (71), Expect = 9.8 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = +3 Query: 270 SKMPNPEK--KLFRMPSADAEIAALHKEWDDARCPICMDHPHNAVLLLCSSH 419 S +P+P + F +PS+ A+ A + D+ C C+ HP+NA L +H Sbjct: 303 SYLPHPIQLSNYFTLPSSCAQADAACQCGDNCECLGCLTHPNNATTLAALNH 354 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 343,067,160 Number of extensions: 7543718 Number of successful extensions: 19780 Number of sequences better than 10.0: 10 Number of HSP's gapped: 19758 Number of HSP's successfully gapped: 10 Length of query: 665 Length of database: 100,686,439 Length adjustment: 120 Effective length of query: 545 Effective length of database: 67,771,039 Effective search space: 36935216255 Effective search space used: 36935216255 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
