ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf87p12 |
|---|---|
| Clone Library Name | barley_pub |
>P24504:NUP3_PENSQ Nuclease PA3 - Penicillium sp.| Length = 270 Score = 123 bits (308), Expect = 2e-27 Identities = 84/280 (30%), Positives = 134/280 (47%), Gaps = 11/280 (3%) Frame = +3 Query: 147 WSAEGHMLTCQIAQDLLEPAAAQAVKNLLPEEAGGDLSAMCVWPDQVRHWYKYRWTSPLH 326 W A GH +AQ + P AA + +L + L+++ W D+ R +W++ LH Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60 Query: 327 FIDTPDKA---CTFDYARDCHDPSGAKDMCVAGAVANFTSQLMHYKQGSADRKYNLTEAL 497 FID D C DY RDC C A+AN+T ++ S+ N EAL Sbjct: 61 FIDAEDNPPTNCNVDYERDC-----GSSGCSISAIANYTQRV----SDSSLSSENHAEAL 111 Query: 498 LFLSHFMGDIHQPMHVGFTSDMGGNSVNLRWFKHKSNLHHVWDREIILTVLAERYGKDMA 677 FL HF+GD+ QP+H +GGN +N+ + + NLH WD + ++ D Sbjct: 112 RFLVHFIGDMTQPLH-DEAYAVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDAE 170 Query: 678 AFRKDLQHNITKGSWSDESSWKDCADLMSCP----TKYATESIGLAC----KWGYDGVHD 833 ++ K L NI G+++ +++ D +S P T++A+++ L C G + Sbjct: 171 SWAKTLVQNIESGNYTAQATGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQT 230 Query: 834 GDTLSEEYFASRLPIVTRRIAQGGVRLAMFLNRAFGDHKA 953 GD L Y+ S + + +IA+GG RLA ++N G A Sbjct: 231 GD-LYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSEIA 269
>P24289:NUP1_PENCI Nuclease P1 - Penicillium citrinum| Length = 270 Score = 122 bits (306), Expect = 3e-27 Identities = 82/280 (29%), Positives = 135/280 (48%), Gaps = 11/280 (3%) Frame = +3 Query: 147 WSAEGHMLTCQIAQDLLEPAAAQAVKNLLPEEAGGDLSAMCVWPDQVRHWYKYRWTSPLH 326 W A GH +AQ + P AA + +L + L+++ W D+ R +W++ LH Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60 Query: 327 FIDTPDKA---CTFDYARDCHDPSGAKDMCVAGAVANFTSQLMHYKQGSADRKYNLTEAL 497 FID D C DY RDC C A+AN+T ++ S+ N EAL Sbjct: 61 FIDAEDNPPTNCNVDYERDC-----GSSGCSISAIANYTQRV----SDSSLSSENHAEAL 111 Query: 498 LFLSHFMGDIHQPMHVGFTSDMGGNSVNLRWFKHKSNLHHVWDREIILTVLAERYGKDMA 677 FL HF+GD+ QP+H +GGN +N+ + + NLH WD + ++ D Sbjct: 112 RFLVHFIGDMTQPLH-DEAYAVGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDAE 170 Query: 678 AFRKDLQHNITKGSWSDES-SW---KDCADLMSCPTKYATESIGLAC----KWGYDGVHD 833 ++ K L NI G+++ ++ W + ++ ++ T++A+++ L C G + Sbjct: 171 SWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQT 230 Query: 834 GDTLSEEYFASRLPIVTRRIAQGGVRLAMFLNRAFGDHKA 953 GD L Y+ S + + +IA+GG RLA ++N G A Sbjct: 231 GD-LYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSEIA 269
>P24021:NUS1_ASPOR Nuclease S1 precursor - Aspergillus oryzae| Length = 287 Score = 108 bits (269), Expect = 6e-23 Identities = 80/281 (28%), Positives = 125/281 (44%), Gaps = 11/281 (3%) Frame = +3 Query: 120 LISAPAARAWSAEGHMLTCQIAQDLLEPAAAQAVKNLLPEEAGGDLSAMCVWPDQVRHWY 299 L A W GH IAQ + + +N+L +++ L+ + W D ++ Sbjct: 12 LALAQLTYGWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTD 71 Query: 300 KYRWTSPLHFI---DTPDKACTFDYARDCHDPSGAKDMCVAGAVANFTSQLMHYKQGSAD 470 ++ P HFI D P ++C DY RDC C A+ N+T+ L+ GS Sbjct: 72 AGEFSKPYHFIDAQDNPPQSCGVDYDRDCGSAG-----CSISAIQNYTNILLESPNGS-- 124 Query: 471 RKYNLTEALLFLSHFMGDIHQPMHVGFTSDMGGNSVNLRWFKHKSNLHHVWDREIILTVL 650 AL F+ H +GDIHQP+H + GGN +++ + +NLHH+WD + Sbjct: 125 ---EALNALKFVVHIIGDIHQPLH-DENLEAGGNGIDVTYDGETTNLHHIWDTN-MPEEA 179 Query: 651 AERYGKDMAAFRKD-LQHNITKGSWSD-ESSWKDCADL---MSCPTKYATESIGLACKWG 815 A Y +A D L I G++S + SW D D+ +S +A ++ C Sbjct: 180 AGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVCSTV 239 Query: 816 YD---GVHDGDTLSEEYFASRLPIVTRRIAQGGVRLAMFLN 929 D + LS EY+ P+ IA+ G RLA +L+ Sbjct: 240 LDDGLAYINSTDLSGEYYDKSQPVFEELIAKAGYRLAAWLD 280
>Q9VG97:GSTT3_DROME Glutathione S-transferase D3 - Drosophila melanogaster (Fruit fly)| Length = 199 Score = 33.5 bits (75), Expect = 2.0 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +3 Query: 618 VWDREIILTVLAERYGKDMAAFRKDLQ 698 +W+ IL L E+YGKD A + KD+Q Sbjct: 46 IWESRAILVYLVEKYGKDDALYPKDIQ 72
>P53582:AMPM1_HUMAN Methionine aminopeptidase 1 - Homo sapiens (Human)| Length = 386 Score = 32.7 bits (73), Expect = 3.4 Identities = 21/75 (28%), Positives = 34/75 (45%) Frame = +3 Query: 156 EGHMLTCQIAQDLLEPAAAQAVKNLLPEEAGGDLSAMCVWPDQVRHWYKYRWTSPLHFID 335 EG L C++A+++L+ AA + EE + C+ R+ Y SPL++ + Sbjct: 137 EGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACI----ARNCYP----SPLNYYN 188 Query: 336 TPDKACTFDYARDCH 380 P CT CH Sbjct: 189 FPKSCCTSVNEVICH 203
>Q8BP48:AMPM1_MOUSE Methionine aminopeptidase 1 - Mus musculus (Mouse)| Length = 386 Score = 32.3 bits (72), Expect = 4.5 Identities = 21/75 (28%), Positives = 34/75 (45%) Frame = +3 Query: 156 EGHMLTCQIAQDLLEPAAAQAVKNLLPEEAGGDLSAMCVWPDQVRHWYKYRWTSPLHFID 335 EG L C++A+++L+ AA + EE + C+ R+ Y SPL++ + Sbjct: 137 EGMRLVCRLAREVLDIAAGMIKAGVTTEEIDHAVHLACI----ARNCYP----SPLNYYN 188 Query: 336 TPDKACTFDYARDCH 380 P CT CH Sbjct: 189 FPKSCCTSVNEVICH 203
>A5DCV3:RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 - Pichia guilliermondii| (Yeast) (Candida guilliermondii) Length = 1579 Score = 31.6 bits (70), Expect = 7.7 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = +1 Query: 529 TSPCMWGSRATWGATR*TYAGSST--SPTSTMYG-TGR*YSPCSPS 657 TSP G+ +G T TY+ +S SPTS Y T YSP SPS Sbjct: 1367 TSPAYGGASPGYGVTSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1412
>P16356:RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 - Caenorhabditis elegans| Length = 1852 Score = 31.6 bits (70), Expect = 7.7 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = +1 Query: 493 PCYSCHTSWEIFTSPCMWGSRATWGATR*TYAGSST--SPTSTMYGTGR*YSPCSP 654 P YS + TSP + T+ T TY+ +S SPTS Y +G YSP SP Sbjct: 1666 PSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSP 1721 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 200,085,504 Number of extensions: 4364373 Number of successful extensions: 14142 Number of sequences better than 10.0: 8 Number of HSP's gapped: 14130 Number of HSP's successfully gapped: 8 Length of query: 437 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 321 Effective length of database: 68,868,219 Effective search space: 22106698299 Effective search space used: 22106698299 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
