ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf87p12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099573.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035J20, full insert sequence Length = 1220 Score = 404 bits (204), Expect = e-109 Identities = 417/488 (85%) Strand = Plus / Plus Query: 156 gaggggcacatgctcacctgccagatcgcgcaggatttgctggagcctgcggcggcgcag 215 ||||| ||||||||||| |||| |||||||||||| |||||||||| || |||||||| Sbjct: 126 gagggtcacatgctcacatgccgaatcgcgcaggatctgctggagccagccgcggcgcac 185 Query: 216 gcggtgaagaaccttctgccggaggaggcgggcggggacctgtcggcgatgtgcgtgtgg 275 ||||||| |||||| ||| |||||||||||| ||| |||||||||||| ||||||||||| Sbjct: 186 gcggtgaggaacctgctgacggaggaggcggacggcgacctgtcggcgctgtgcgtgtgg 245 Query: 276 ccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgcacttcatcgac 335 ||||| ||||| |||||||||||||||||| ||||||| ||||| || |||||||||||| Sbjct: 246 ccggatcaggtcaggcactggtacaagtacaggtggacgagccctctccacttcatcgac 305 Query: 336 acccccgacaaggcctgcaccttcgactacgccagggactgccatgaccccagcggcgcc 395 ||||| ||||| ||||||| ||||| |||| | ||||| ||||||| | | || || Sbjct: 306 acccctgacaaagcctgcagcttcgtctactcaagggattgccatggcgcggatggtgcg 365 Query: 396 aaggacatgtgcgtcgccggcgccgtcgccaacttcacctcgcagctcatgcactacaag 455 |||| ||||||||||| ||||| |||| ||||||||||| ||||| |||||||| || Sbjct: 366 gaggatatgtgcgtcgctggcgcgatcgcgaacttcacctctcagcttatgcactataat 425 Query: 456 caaggcagcgccgaccgcaagtataacctgacggaagccctgctattcctgtcacacttc 515 || ||||||||||| ||||| |||||| |||| ||||| ||||||||| ||||||||||| Sbjct: 426 cacggcagcgccgatcgcaaatataacatgactgaagcactgctattcttgtcacacttc 485 Query: 516 atgggagatattcaccagcccatgcatgtggggttcacgagcgacatggggggcaactcg 575 ||||||||| |||| ||||| |||||||| ||||||||||||||| |||||||| || Sbjct: 486 atgggagatgttcatcagccaatgcatgttgggttcacgagcgaccaagggggcaatacg 545 Query: 576 gtgaacctacgctggttcaagcacaagtccaacctccaccatgtatgggacagggagata 635 | || ||||||||||||| |||||| ||||| ||||| ||||| ||||| |||||||| Sbjct: 546 attaatctacgctggttcaggcacaaatccaatctccatcatgtgtgggatagggagatg 605 Query: 636 atactcac 643 |||||||| Sbjct: 606 atactcac 613 Score = 79.8 bits (40), Expect = 2e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 868 ggctcccgatcgtgacgcggcggatcgcgcaggggggagtgaggctggccatgttc 923 |||||||||||||||| || || ||||||||||||||||| ||||||||||||||| Sbjct: 841 ggctcccgatcgtgacacgacgaatcgcgcaggggggagttaggctggccatgttc 896
>dbj|AK061848.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F04, full insert sequence Length = 1241 Score = 404 bits (204), Expect = e-109 Identities = 417/488 (85%) Strand = Plus / Plus Query: 156 gaggggcacatgctcacctgccagatcgcgcaggatttgctggagcctgcggcggcgcag 215 ||||| ||||||||||| |||| |||||||||||| |||||||||| || |||||||| Sbjct: 125 gagggtcacatgctcacatgccgaatcgcgcaggatctgctggagccagccgcggcgcac 184 Query: 216 gcggtgaagaaccttctgccggaggaggcgggcggggacctgtcggcgatgtgcgtgtgg 275 ||||||| |||||| ||| |||||||||||| ||| |||||||||||| ||||||||||| Sbjct: 185 gcggtgaggaacctgctgacggaggaggcggacggcgacctgtcggcgctgtgcgtgtgg 244 Query: 276 ccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgcacttcatcgac 335 ||||| ||||| |||||||||||||||||| ||||||| ||||| || |||||||||||| Sbjct: 245 ccggatcaggtcaggcactggtacaagtacaggtggacgagccctctccacttcatcgac 304 Query: 336 acccccgacaaggcctgcaccttcgactacgccagggactgccatgaccccagcggcgcc 395 ||||| ||||| ||||||| ||||| |||| | ||||| ||||||| | | || || Sbjct: 305 acccctgacaaagcctgcagcttcgtctactcaagggattgccatggcgcggatggtgcg 364 Query: 396 aaggacatgtgcgtcgccggcgccgtcgccaacttcacctcgcagctcatgcactacaag 455 |||| ||||||||||| ||||| |||| ||||||||||| ||||| |||||||| || Sbjct: 365 gaggatatgtgcgtcgctggcgcgatcgcgaacttcacctctcagcttatgcactataat 424 Query: 456 caaggcagcgccgaccgcaagtataacctgacggaagccctgctattcctgtcacacttc 515 || ||||||||||| ||||| |||||| |||| ||||| ||||||||| ||||||||||| Sbjct: 425 cacggcagcgccgatcgcaaatataacatgactgaagcactgctattcttgtcacacttc 484 Query: 516 atgggagatattcaccagcccatgcatgtggggttcacgagcgacatggggggcaactcg 575 ||||||||| |||| ||||| |||||||| ||||||||||||||| |||||||| || Sbjct: 485 atgggagatgttcatcagccaatgcatgttgggttcacgagcgaccaagggggcaatacg 544 Query: 576 gtgaacctacgctggttcaagcacaagtccaacctccaccatgtatgggacagggagata 635 | || ||||||||||||| |||||| ||||| ||||| ||||| ||||| |||||||| Sbjct: 545 attaatctacgctggttcaggcacaaatccaatctccatcatgtgtgggatagggagatg 604 Query: 636 atactcac 643 |||||||| Sbjct: 605 atactcac 612 Score = 79.8 bits (40), Expect = 2e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 868 ggctcccgatcgtgacgcggcggatcgcgcaggggggagtgaggctggccatgttc 923 |||||||||||||||| || || ||||||||||||||||| ||||||||||||||| Sbjct: 840 ggctcccgatcgtgacacgacgaatcgcgcaggggggagttaggctggccatgttc 895
>ref|NM_001060552.1| Oryza sativa (japonica cultivar-group) Os04g0636400 (Os04g0636400) mRNA, complete cds Length = 1240 Score = 389 bits (196), Expect = e-104 Identities = 416/488 (85%), Gaps = 1/488 (0%) Strand = Plus / Plus Query: 156 gaggggcacatgctcacctgccagatcgcgcaggatttgctggagcctgcggcggcgcag 215 ||||| ||||||||||| |||| |||||||||||| |||||||||| || |||||||| Sbjct: 125 gagggtcacatgctcacatgccgaatcgcgcaggatctgctggagccagccgcggcgcac 184 Query: 216 gcggtgaagaaccttctgccggaggaggcgggcggggacctgtcggcgatgtgcgtgtgg 275 ||||||| |||||| ||| |||||||||||| ||| |||||||||||| ||||||||||| Sbjct: 185 gcggtgaggaacctgctgacggaggaggcggacggcgacctgtcggcgctgtgcgtgtgg 244 Query: 276 ccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgcacttcatcgac 335 ||||| ||||| |||||||||||||||||| ||||||| ||||| || |||||||||||| Sbjct: 245 ccggatcaggtcaggcactggtacaagtacaggtggacgagccctctccacttcatcgac 304 Query: 336 acccccgacaaggcctgcaccttcgactacgccagggactgccatgaccccagcggcgcc 395 | ||| ||||| ||||||| ||||| |||| | ||||| ||||||| | | || || Sbjct: 305 a-ccctgacaaagcctgcagcttcgtctactcaagggattgccatggcgcggatggtgcg 363 Query: 396 aaggacatgtgcgtcgccggcgccgtcgccaacttcacctcgcagctcatgcactacaag 455 |||| ||||||||||| ||||| |||| ||||||||||| ||||| |||||||| || Sbjct: 364 gaggatatgtgcgtcgctggcgcgatcgcgaacttcacctctcagcttatgcactataat 423 Query: 456 caaggcagcgccgaccgcaagtataacctgacggaagccctgctattcctgtcacacttc 515 || ||||||||||| ||||| |||||| |||| ||||| ||||||||| ||||||||||| Sbjct: 424 cacggcagcgccgatcgcaaatataacatgactgaagcactgctattcttgtcacacttc 483 Query: 516 atgggagatattcaccagcccatgcatgtggggttcacgagcgacatggggggcaactcg 575 ||||||||| |||| ||||| |||||||| ||||||||||||||| |||||||| || Sbjct: 484 atgggagatgttcatcagccaatgcatgttgggttcacgagcgaccaagggggcaatacg 543 Query: 576 gtgaacctacgctggttcaagcacaagtccaacctccaccatgtatgggacagggagata 635 | || ||||||||||||| |||||| ||||| ||||| ||||| ||||| |||||||| Sbjct: 544 attaatctacgctggttcaggcacaaatccaatctccatcatgtgtgggatagggagatg 603 Query: 636 atactcac 643 |||||||| Sbjct: 604 atactcac 611 Score = 79.8 bits (40), Expect = 2e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 868 ggctcccgatcgtgacgcggcggatcgcgcaggggggagtgaggctggccatgttc 923 |||||||||||||||| || || ||||||||||||||||| ||||||||||||||| Sbjct: 839 ggctcccgatcgtgacacgacgaatcgcgcaggggggagttaggctggccatgttc 894
>emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0410G08, complete sequence Length = 63554 Score = 200 bits (101), Expect = 9e-48 Identities = 161/181 (88%) Strand = Plus / Plus Query: 185 gcaggatttgctggagcctgcggcggcgcaggcggtgaagaaccttctgccggaggaggc 244 ||||||| |||||||||| || |||||||| ||||||| |||||| ||| |||||||||| Sbjct: 58646 gcaggatctgctggagccagccgcggcgcacgcggtgaggaacctgctgacggaggaggc 58705 Query: 245 gggcggggacctgtcggcgatgtgcgtgtggccggaccaggtgaggcactggtacaagta 304 || ||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||| Sbjct: 58706 ggacggcgacctgtcggcgctgtgcgtgtggccggatcaggtcaggcactggtacaagta 58765 Query: 305 ccggtggaccagcccgctgcacttcatcgacacccccgacaaggcctgcaccttcgacta 364 | ||||||| ||||| || ||||||||||||||||| ||||| ||||||| ||||| ||| Sbjct: 58766 caggtggacgagccctctccacttcatcgacacccctgacaaagcctgcagcttcgtcta 58825 Query: 365 c 365 | Sbjct: 58826 c 58826 Score = 79.8 bits (40), Expect = 2e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 868 ggctcccgatcgtgacgcggcggatcgcgcaggggggagtgaggctggccatgttc 923 |||||||||||||||| || || ||||||||||||||||| ||||||||||||||| Sbjct: 60039 ggctcccgatcgtgacacgacgaatcgcgcaggggggagttaggctggccatgttc 60094 Score = 69.9 bits (35), Expect = 2e-08 Identities = 68/79 (86%) Strand = Plus / Plus Query: 397 aggacatgtgcgtcgccggcgccgtcgccaacttcacctcgcagctcatgcactacaagc 456 |||| ||||||||||| ||||| |||| ||||||||||| ||||| |||||||| || | Sbjct: 58968 aggatatgtgcgtcgctggcgcgatcgcgaacttcacctctcagcttatgcactataatc 59027 Query: 457 aaggcagcgccgaccgcaa 475 | ||||||||||| ||||| Sbjct: 59028 acggcagcgccgatcgcaa 59046 Score = 69.9 bits (35), Expect = 2e-08 Identities = 77/91 (84%) Strand = Plus / Plus Query: 530 ccagcccatgcatgtggggttcacgagcgacatggggggcaactcggtgaacctacgctg 589 |||||| |||||||| ||||||||||||||| |||||||| || | || |||||||| Sbjct: 59301 ccagccaatgcatgttgggttcacgagcgaccaagggggcaatacgattaatctacgctg 59360 Query: 590 gttcaagcacaagtccaacctccaccatgta 620 ||||| |||||| ||||| ||||| |||||| Sbjct: 59361 gttcaggcacaaatccaatctccatcatgta 59391 Score = 63.9 bits (32), Expect = 1e-06 Identities = 47/52 (90%) Strand = Plus / Plus Query: 478 ataacctgacggaagccctgctattcctgtcacacttcatgggagatattca 529 ||||| |||| ||||| ||||||||| |||||||||||||||||||| |||| Sbjct: 59162 ataacatgactgaagcactgctattcttgtcacacttcatgggagatgttca 59213
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 184 bits (93), Expect = 5e-43 Identities = 160/181 (88%), Gaps = 1/181 (0%) Strand = Plus / Plus Query: 185 gcaggatttgctggagcctgcggcggcgcaggcggtgaagaaccttctgccggaggaggc 244 ||||||| |||||||||| || |||||||| ||||||| |||||| ||| |||||||||| Sbjct: 32397150 gcaggatctgctggagccagccgcggcgcacgcggtgaggaacctgctgacggaggaggc 32397209 Query: 245 gggcggggacctgtcggcgatgtgcgtgtggccggaccaggtgaggcactggtacaagta 304 || ||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||| Sbjct: 32397210 ggacggcgacctgtcggcgctgtgcgtgtggccggatcaggtcaggcactggtacaagta 32397269 Query: 305 ccggtggaccagcccgctgcacttcatcgacacccccgacaaggcctgcaccttcgacta 364 | ||||||| ||||| || ||||||||||||| ||| ||||| ||||||| ||||| ||| Sbjct: 32397270 caggtggacgagccctctccacttcatcgaca-ccctgacaaagcctgcagcttcgtcta 32397328 Query: 365 c 365 | Sbjct: 32397329 c 32397329 Score = 79.8 bits (40), Expect = 2e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 868 ggctcccgatcgtgacgcggcggatcgcgcaggggggagtgaggctggccatgttc 923 |||||||||||||||| || || ||||||||||||||||| ||||||||||||||| Sbjct: 32398542 ggctcccgatcgtgacacgacgaatcgcgcaggggggagttaggctggccatgttc 32398597 Score = 69.9 bits (35), Expect = 2e-08 Identities = 68/79 (86%) Strand = Plus / Plus Query: 397 aggacatgtgcgtcgccggcgccgtcgccaacttcacctcgcagctcatgcactacaagc 456 |||| ||||||||||| ||||| |||| ||||||||||| ||||| |||||||| || | Sbjct: 32397471 aggatatgtgcgtcgctggcgcgatcgcgaacttcacctctcagcttatgcactataatc 32397530 Query: 457 aaggcagcgccgaccgcaa 475 | ||||||||||| ||||| Sbjct: 32397531 acggcagcgccgatcgcaa 32397549 Score = 69.9 bits (35), Expect = 2e-08 Identities = 77/91 (84%) Strand = Plus / Plus Query: 530 ccagcccatgcatgtggggttcacgagcgacatggggggcaactcggtgaacctacgctg 589 |||||| |||||||| ||||||||||||||| |||||||| || | || |||||||| Sbjct: 32397804 ccagccaatgcatgttgggttcacgagcgaccaagggggcaatacgattaatctacgctg 32397863 Query: 590 gttcaagcacaagtccaacctccaccatgta 620 ||||| |||||| ||||| ||||| |||||| Sbjct: 32397864 gttcaggcacaaatccaatctccatcatgta 32397894 Score = 63.9 bits (32), Expect = 1e-06 Identities = 47/52 (90%) Strand = Plus / Plus Query: 478 ataacctgacggaagccctgctattcctgtcacacttcatgggagatattca 529 ||||| |||| ||||| ||||||||| |||||||||||||||||||| |||| Sbjct: 32397665 ataacatgactgaagcactgctattcttgtcacacttcatgggagatgttca 32397716
>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13, complete sequence Length = 123480 Score = 184 bits (93), Expect = 5e-43 Identities = 160/181 (88%), Gaps = 1/181 (0%) Strand = Plus / Plus Query: 185 gcaggatttgctggagcctgcggcggcgcaggcggtgaagaaccttctgccggaggaggc 244 ||||||| |||||||||| || |||||||| ||||||| |||||| ||| |||||||||| Sbjct: 13951 gcaggatctgctggagccagccgcggcgcacgcggtgaggaacctgctgacggaggaggc 14010 Query: 245 gggcggggacctgtcggcgatgtgcgtgtggccggaccaggtgaggcactggtacaagta 304 || ||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||| Sbjct: 14011 ggacggcgacctgtcggcgctgtgcgtgtggccggatcaggtcaggcactggtacaagta 14070 Query: 305 ccggtggaccagcccgctgcacttcatcgacacccccgacaaggcctgcaccttcgacta 364 | ||||||| ||||| || ||||||||||||| ||| ||||| ||||||| ||||| ||| Sbjct: 14071 caggtggacgagccctctccacttcatcgaca-ccctgacaaagcctgcagcttcgtcta 14129 Query: 365 c 365 | Sbjct: 14130 c 14130 Score = 79.8 bits (40), Expect = 2e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 868 ggctcccgatcgtgacgcggcggatcgcgcaggggggagtgaggctggccatgttc 923 |||||||||||||||| || || ||||||||||||||||| ||||||||||||||| Sbjct: 15343 ggctcccgatcgtgacacgacgaatcgcgcaggggggagttaggctggccatgttc 15398 Score = 69.9 bits (35), Expect = 2e-08 Identities = 68/79 (86%) Strand = Plus / Plus Query: 397 aggacatgtgcgtcgccggcgccgtcgccaacttcacctcgcagctcatgcactacaagc 456 |||| ||||||||||| ||||| |||| ||||||||||| ||||| |||||||| || | Sbjct: 14272 aggatatgtgcgtcgctggcgcgatcgcgaacttcacctctcagcttatgcactataatc 14331 Query: 457 aaggcagcgccgaccgcaa 475 | ||||||||||| ||||| Sbjct: 14332 acggcagcgccgatcgcaa 14350 Score = 69.9 bits (35), Expect = 2e-08 Identities = 77/91 (84%) Strand = Plus / Plus Query: 530 ccagcccatgcatgtggggttcacgagcgacatggggggcaactcggtgaacctacgctg 589 |||||| |||||||| ||||||||||||||| |||||||| || | || |||||||| Sbjct: 14605 ccagccaatgcatgttgggttcacgagcgaccaagggggcaatacgattaatctacgctg 14664 Query: 590 gttcaagcacaagtccaacctccaccatgta 620 ||||| |||||| ||||| ||||| |||||| Sbjct: 14665 gttcaggcacaaatccaatctccatcatgta 14695 Score = 63.9 bits (32), Expect = 1e-06 Identities = 47/52 (90%) Strand = Plus / Plus Query: 478 ataacctgacggaagccctgctattcctgtcacacttcatgggagatattca 529 ||||| |||| ||||| ||||||||| |||||||||||||||||||| |||| Sbjct: 14466 ataacatgactgaagcactgctattcttgtcacacttcatgggagatgttca 14517
>gb|AF082031.1|AF082031 Hemerocallis hybrid cultivar senescence-associated protein 6 (SA6) mRNA, complete cds Length = 1129 Score = 77.8 bits (39), Expect = 9e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 288 aggcactggtacaagtaccggtggaccagcccgctgcacttcatcgacacccccgacaag 347 |||||||||||||||||| |||||| |||||| || ||||||||||||||||| ||| | Sbjct: 211 aggcactggtacaagtacaggtggagcagccccctacacttcatcgacacccctgacgat 270 Query: 348 gcctgcaccttcgactacgccagggactgccatga 382 || ||| |||| || ||| | ||||| |||||||| Sbjct: 271 gcatgctcctttgattactcaagggattgccatga 305 Score = 73.8 bits (37), Expect = 1e-09 Identities = 49/53 (92%) Strand = Plus / Plus Query: 585 cgctggttcaagcacaagtccaacctccaccatgtatgggacagggagataat 637 |||||||||| |||||||||||| || |||||||||||||| ||||||||||| Sbjct: 508 cgctggttcaggcacaagtccaatcttcaccatgtatgggatagggagataat 560 Score = 46.1 bits (23), Expect = 0.32 Identities = 41/47 (87%) Strand = Plus / Plus Query: 495 ctgctattcctgtcacacttcatgggagatattcaccagcccatgca 541 ||||| |||||||| || |||||||||||||| || ||||| ||||| Sbjct: 418 ctgctcttcctgtcccatttcatgggagatatccatcagccaatgca 464
>ref|NM_100991.2| Arabidopsis thaliana BFN1 (BIFUNCTIONAL NUCLEASE I); nucleic acid binding (BFN1) mRNA, complete cds Length = 1274 Score = 65.9 bits (33), Expect = 3e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 477 tataacctgacggaagccctgctattcctgtcacacttcatgggagatattcaccagccc 536 |||||| |||| |||||||| | ||| |||| || ||||||||||||||||| ||||| Sbjct: 499 tataacatgaccgaagcccttttgttcttgtctcatttcatgggagatattcatcagccg 558 Query: 537 atgcatgtggggttcac 553 ||||||||||| ||||| Sbjct: 559 atgcatgtgggattcac 575 Score = 42.1 bits (21), Expect = 5.0 Identities = 72/89 (80%) Strand = Plus / Plus Query: 265 tgtgcgtgtggccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgc 324 |||| |||||||| |||||| | | || ||||||||||| || |||||||||| || | Sbjct: 287 tgtgtgtgtggcctgaccagatccgacattggtacaagtatcgttggaccagccatctcc 346 Query: 325 acttcatcgacacccccgacaaggcctgc 353 | | ||||||||| |||||| | |||||| Sbjct: 347 attacatcgacactcccgaccaagcctgc 375
>gb|AY079368.1| Arabidopsis thaliana putative bifunctional nuclease bfn1 (At1g11190) mRNA, complete cds Length = 949 Score = 65.9 bits (33), Expect = 3e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 477 tataacctgacggaagccctgctattcctgtcacacttcatgggagatattcaccagccc 536 |||||| |||| |||||||| | ||| |||| || ||||||||||||||||| ||||| Sbjct: 415 tataacatgaccgaagcccttttgttcttgtctcatttcatgggagatattcatcagccg 474 Query: 537 atgcatgtggggttcac 553 ||||||||||| ||||| Sbjct: 475 atgcatgtgggattcac 491 Score = 42.1 bits (21), Expect = 5.0 Identities = 72/89 (80%) Strand = Plus / Plus Query: 265 tgtgcgtgtggccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgc 324 |||| |||||||| |||||| | | || ||||||||||| || |||||||||| || | Sbjct: 203 tgtgtgtgtggcctgaccagatccgacattggtacaagtatcgttggaccagccatctcc 262 Query: 325 acttcatcgacacccccgacaaggcctgc 353 | | ||||||||| |||||| | |||||| Sbjct: 263 attacatcgacactcccgaccaagcctgc 291
>gb|AY040016.1| Arabidopsis thaliana putative bifunctional nuclease bfn1 (At1g11190) mRNA, complete cds Length = 1291 Score = 65.9 bits (33), Expect = 3e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 477 tataacctgacggaagccctgctattcctgtcacacttcatgggagatattcaccagccc 536 |||||| |||| |||||||| | ||| |||| || ||||||||||||||||| ||||| Sbjct: 499 tataacatgaccgaagcccttttgttcttgtctcatttcatgggagatattcatcagccg 558 Query: 537 atgcatgtggggttcac 553 ||||||||||| ||||| Sbjct: 559 atgcatgtgggattcac 575 Score = 42.1 bits (21), Expect = 5.0 Identities = 72/89 (80%) Strand = Plus / Plus Query: 265 tgtgcgtgtggccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgc 324 |||| |||||||| |||||| | | || ||||||||||| || |||||||||| || | Sbjct: 287 tgtgtgtgtggcctgaccagatccgacattggtacaagtatcgttggaccagccatctcc 346 Query: 325 acttcatcgacacccccgacaaggcctgc 353 | | ||||||||| |||||| | |||||| Sbjct: 347 attacatcgacactcccgaccaagcctgc 375
>gb|AY088393.1| Arabidopsis thaliana clone 643 mRNA, complete sequence Length = 1199 Score = 65.9 bits (33), Expect = 3e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 477 tataacctgacggaagccctgctattcctgtcacacttcatgggagatattcaccagccc 536 |||||| |||| |||||||| | ||| |||| || ||||||||||||||||| ||||| Sbjct: 499 tataacatgaccgaagcccttttgttcttgtctcatttcatgggagatattcatcagccg 558 Query: 537 atgcatgtggggttcac 553 ||||||||||| ||||| Sbjct: 559 atgcatgtgggattcac 575
>emb|BX817385.1|CNS0ACJE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL19ZF08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1067 Score = 65.9 bits (33), Expect = 3e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 477 tataacctgacggaagccctgctattcctgtcacacttcatgggagatattcaccagccc 536 |||||| |||| |||||||| | ||| |||| || ||||||||||||||||| ||||| Sbjct: 484 tataacatgaccgaagcccttttgttcttgtctcatttcatgggagatattcatcagccg 543 Query: 537 atgcatgtggggttcac 553 ||||||||||| ||||| Sbjct: 544 atgcatgtgggattcac 560 Score = 42.1 bits (21), Expect = 5.0 Identities = 72/89 (80%) Strand = Plus / Plus Query: 265 tgtgcgtgtggccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgc 324 |||| |||||||| |||||| | | || ||||||||||| || |||||||||| || | Sbjct: 272 tgtgtgtgtggcctgaccagatccgacattggtacaagtatcgttggaccagccatctcc 331 Query: 325 acttcatcgacacccccgacaaggcctgc 353 | | ||||||||| |||||| | |||||| Sbjct: 332 attacatcgacactcccgaccaagcctgc 360
>gb|U90264.1|ATU90264 Arabidopsis thaliana bifunctional nuclease bfn1 (bfn1) gene, complete cds Length = 1181 Score = 65.9 bits (33), Expect = 3e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 477 tataacctgacggaagccctgctattcctgtcacacttcatgggagatattcaccagccc 536 |||||| |||| |||||||| | ||| |||| || ||||||||||||||||| ||||| Sbjct: 466 tataacatgaccgaagcccttttgttcttgtctcatttcatgggagatattcatcagccg 525 Query: 537 atgcatgtggggttcac 553 ||||||||||| ||||| Sbjct: 526 atgcatgtgggattcac 542 Score = 42.1 bits (21), Expect = 5.0 Identities = 72/89 (80%) Strand = Plus / Plus Query: 265 tgtgcgtgtggccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgc 324 |||| |||||||| |||||| | | || ||||||||||| || |||||||||| || | Sbjct: 254 tgtgtgtgtggcctgaccagatccgacattggtacaagtatcgttggaccagccatctcc 313 Query: 325 acttcatcgacacccccgacaaggcctgc 353 | | ||||||||| |||||| | |||||| Sbjct: 314 attacatcgacactcccgaccaagcctgc 342
>emb|BX817076.1|CNS0AD7I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH84ZD05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 701 Score = 63.9 bits (32), Expect = 1e-06 Identities = 65/76 (85%) Strand = Plus / Plus Query: 478 ataacctgacggaagccctgctattcctgtcacacttcatgggagatattcaccagccca 537 ||||| |||| |||||||| | ||| |||| || ||||||||||||||||| ||||| | Sbjct: 1 ataacatgaccgaagcccttttgttcttgtctcatttcatgggagatattcatcagccga 60 Query: 538 tgcatgtggggttcac 553 |||||||||| ||||| Sbjct: 61 tgcatgtgggattcac 76
>gb|EF032908.1| Spinacia oleracea SP I mismatch endonuclease mRNA, complete cds Length = 980 Score = 61.9 bits (31), Expect = 5e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 496 tgctattcctgtcacacttcatgggagatattcaccagcccatgcat 542 ||||||| ||||||||||||||||| |||||||| ||||| |||||| Sbjct: 424 tgctatttctgtcacacttcatgggtgatattcatcagccaatgcat 470 Score = 52.0 bits (26), Expect = 0.005 Identities = 53/62 (85%) Strand = Plus / Plus Query: 270 gtgtggccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgcacttc 329 |||||||| ||||| || || ||||||||||| ||||| ||||| ||||| || |||||| Sbjct: 198 gtgtggccagaccaagtaagacactggtacaaataccgctggactagccctcttcacttc 257 Query: 330 at 331 || Sbjct: 258 at 259 Score = 42.1 bits (21), Expect = 5.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 609 ctccaccatgtatgggacagggagataat 637 ||||| |||||||||||||| |||||||| Sbjct: 537 ctccatcatgtatgggacagagagataat 565
>gb|AY676602.1| Lotus corniculatus var. japonicus endonuclease mRNA, partial cds Length = 421 Score = 58.0 bits (29), Expect = 8e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 505 tgtcacacttcatgggagatattcaccagcccatgcatgtggggttcac 553 |||||||||||||||||||| | |||||||| |||||||| || ||||| Sbjct: 8 tgtcacacttcatgggagatgtacaccagcctatgcatgttggattcac 56
>gb|AY986984.1| Dianthus caryophyllus cultivar Nora putative nuclease mRNA, partial cds Length = 790 Score = 58.0 bits (29), Expect = 8e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 505 tgtcacacttcatgggagatattcaccagcccatgca 541 ||||||| ||||||||||||||||||||||| ||||| Sbjct: 396 tgtcacatttcatgggagatattcaccagccaatgca 432
>gb|AY986985.1| Dianthus caryophyllus cultivar Light Pink Barbara putative nuclease mRNA, partial cds Length = 657 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 507 tcacacttcatgggagatattcaccagcccatgca 541 ||||| ||||||||||||||||||||||| ||||| Sbjct: 232 tcacatttcatgggagatattcaccagccaatgca 266
>gb|AF237958.1|AF237958 Apium graveolens CEL I mismatch endonuclease mRNA, complete cds Length = 1098 Score = 54.0 bits (27), Expect = 0.001 Identities = 33/35 (94%) Strand = Plus / Plus Query: 510 cacttcatgggagatattcaccagcccatgcatgt 544 |||||||||||||||||||| ||||| |||||||| Sbjct: 557 cacttcatgggagatattcatcagcctatgcatgt 591
>gb|AY105439.1| Zea mays PCO064225 mRNA sequence Length = 1193 Score = 50.1 bits (25), Expect = 0.020 Identities = 49/57 (85%) Strand = Plus / Plus Query: 231 ctgccggaggaggcgggcggggacctgtcggcgatgtgcgtgtggccggaccaggtg 287 ||||||||| |||||||||||| |||||| || ||||| |||| ||||||||||| Sbjct: 285 ctgccggagtcggcgggcggggagctgtcgacggtgtgcccgtgggcggaccaggtg 341
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 48.1 bits (24), Expect = 0.081 Identities = 24/24 (100%) Strand = Plus / Plus Query: 123 atctcggcgccggcggcgcgggcg 146 |||||||||||||||||||||||| Sbjct: 3544307 atctcggcgccggcggcgcgggcg 3544330
>gb|AF420010.1| Narcissus pseudonarcissus S1-type endonuclease mRNA, partial cds Length = 409 Score = 46.1 bits (23), Expect = 0.32 Identities = 32/35 (91%) Strand = Plus / Plus Query: 507 tcacacttcatgggagatattcaccagcccatgca 541 |||||||||||||||||||| || ||||| ||||| Sbjct: 325 tcacacttcatgggagatatccatcagccaatgca 359
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.32 Identities = 26/27 (96%) Strand = Plus / Plus Query: 640 tcaccgtgctcgccgagcgctacggca 666 |||||||||||||| |||||||||||| Sbjct: 2887581 tcaccgtgctcgcccagcgctacggca 2887607 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 ctcggcgccggcggcgcgggc 145 ||||||||||||||||||||| Sbjct: 3321730 ctcggcgccggcggcgcgggc 3321710
>ref|NM_148368.1| Arabidopsis thaliana endonuclease/ nucleic acid binding (AT4G21585) mRNA, complete cds Length = 900 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 519 ggagatattcaccagcccatgcatgt 544 |||||||||||||||||| ||||||| Sbjct: 448 ggagatattcaccagcccttgcatgt 473
>gb|AE008877.1| Salmonella typhimurium LT2, section 181 of 220 of the complete genome Length = 22492 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 176 ccagatcgcgcaggatttgctg 197 |||||||||||||||||||||| Sbjct: 11116 ccagatcgcgcaggatttgctg 11137
>emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 16/20 Length = 245050 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 176 ccagatcgcgcaggatttgctg 197 |||||||||||||||||||||| Sbjct: 111979 ccagatcgcgcaggatttgctg 111958
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 176 ccagatcgcgcaggatttgctg 197 |||||||||||||||||||||| Sbjct: 3796909 ccagatcgcgcaggatttgctg 3796930
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 176 ccagatcgcgcaggatttgctg 197 |||||||||||||||||||||| Sbjct: 3825469 ccagatcgcgcaggatttgctg 3825448
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 176 ccagatcgcgcaggatttgctg 197 |||||||||||||||||||||| Sbjct: 3948403 ccagatcgcgcaggatttgctg 3948424
>dbj|AB003131.1| Zinnia elegans mRNA for endonuclease, complete cds Length = 1104 Score = 44.1 bits (22), Expect = 1.3 Identities = 43/50 (86%) Strand = Plus / Plus Query: 588 tggttcaagcacaagtccaacctccaccatgtatgggacagggagataat 637 ||||||| ||| |||||||| | |||||||||||||| || |||||||| Sbjct: 523 tggttcaggcataagtccaatttgcaccatgtatgggatagagagataat 572
>emb|AM238701.1| Lycopersicon esculentum mRNA for putative endonuclease (tbn1 gene), variety Rutgers Length = 909 Score = 42.1 bits (21), Expect = 5.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 612 caccatgtatgggacagggagataatact 640 |||||||| ||||| |||||||||||||| Sbjct: 541 caccatgtgtgggatagggagataatact 569
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 101 ggcggtgctcgggctggtgct 121 ||||||||||||||||||||| Sbjct: 2612155 ggcggtgctcgggctggtgct 2612135
>gb|U42841.1| Caenorhabditis elegans cosmid T17H7, complete sequence Length = 31228 Score = 42.1 bits (21), Expect = 5.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 193 tgctggagcctgcggcggcgcaggcggtg 221 |||||||||||||||||||| ||| |||| Sbjct: 7609 tgctggagcctgcggcggcggaggtggtg 7637
>gb|AC007259.4| Arabidopsis thaliana chromosome I BAC T28P6 genomic sequence, complete sequence Length = 97146 Score = 42.1 bits (21), Expect = 5.0 Identities = 72/89 (80%) Strand = Plus / Plus Query: 265 tgtgcgtgtggccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgc 324 |||| |||||||| |||||| | | || ||||||||||| || |||||||||| || | Sbjct: 65861 tgtgtgtgtggcctgaccagatccgacattggtacaagtatcgttggaccagccatctcc 65920 Query: 325 acttcatcgacacccccgacaaggcctgc 353 | | ||||||||| |||||| | |||||| Sbjct: 65921 attacatcgacactcccgaccaagcctgc 65949
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 113 gctggtgctcatctcggcgccggcg 137 ||||||| ||||||||||||||||| Sbjct: 3218944 gctggtggtcatctcggcgccggcg 3218968
>ref|NM_064846.2| Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds Length = 3771 Score = 42.1 bits (21), Expect = 5.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 193 tgctggagcctgcggcggcgcaggcggtg 221 |||||||||||||||||||| ||| |||| Sbjct: 612 tgctggagcctgcggcggcggaggtggtg 584
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 cggcggcgcgggcgtggagcg 153 ||||||||||||||||||||| Sbjct: 35781 cggcggcgcgggcgtggagcg 35761
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 147 tggagcgccgaggggcacatgctca 171 ||||||||||||||||||| ||||| Sbjct: 2801466 tggagcgccgaggggcacaagctca 2801442
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcggcggtgctcgggctggtgctca 123 |||| |||||||||||||||||||| Sbjct: 2939549 gcggtggtgctcgggctggtgctca 2939573
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 645 gtgctcgccgagcgctacggc 665 ||||||||||||||||||||| Sbjct: 2741074 gtgctcgccgagcgctacggc 2741094 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 gcggcggtgctcgggctggtg 119 ||||||||||||||||||||| Sbjct: 6433419 gcggcggtgctcgggctggtg 6433439
>emb|BX817361.1|CNS0ACOO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL18ZC07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 591 Score = 42.1 bits (21), Expect = 5.0 Identities = 72/89 (80%) Strand = Plus / Plus Query: 265 tgtgcgtgtggccggaccaggtgaggcactggtacaagtaccggtggaccagcccgctgc 324 |||| |||||||| |||||| | | || ||||||||||| || |||||||||| || | Sbjct: 267 tgtgtgtgtggcctgaccagatccgacattggtacaagtatcgttggaccagccatctcc 326 Query: 325 acttcatcgacacccccgacaaggcctgc 353 | | ||||||||| |||||| | |||||| Sbjct: 327 attacatcgacactcccgaccaagcctgc 355
>ref|XM_723656.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07783) partial mRNA Length = 675 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 tggagcgccgaggggcacatgctca 171 ||||||||||||||||||| ||||| Sbjct: 165 tggagcgccgaggggcacaagctca 189
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 5.0 Identities = 33/37 (89%) Strand = Plus / Minus Query: 509 acacttcatgggagatattcaccagcccatgcatgtg 545 |||||| || || ||||||||||||||| |||||||| Sbjct: 4061518 acactttattggcgatattcaccagcccttgcatgtg 4061482 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 191,279,773 Number of extensions: 10319377 Number of successful extensions: 209492 Number of sequences better than 10.0: 43 Number of HSP's gapped: 209492 Number of HSP's successfully gapped: 72 Length of query: 1312 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1289 Effective length of database: 18,503,978,556 Effective search space: 23851628358684 Effective search space used: 23851628358684 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
