Clone Name | FLbaf99p17 |
---|---|
Clone Library Name | barley_pub |
>emb|CT835910.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005K22, full insert sequence Length = 953 Score = 387 bits (195), Expect = e-104 Identities = 413/485 (85%), Gaps = 3/485 (0%) Strand = Plus / Plus Query: 199 agaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggccg 258 |||||||||||||||||| | ||||||| |||||||||||| ||| || || || | Sbjct: 164 agaagttcccggcggggagggcgtacgcggcgtgcgaggacctgccgagcctcggcgcgg 223 Query: 259 cgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgcgc 318 ||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||| |||| Sbjct: 224 cgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgttcgtggcggcgc 283 Query: 319 cggcgggggccaacgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccg 378 ||||||| ||| |||||||||||| |||| ||| |||||||| |||||||| ||||||| Sbjct: 284 cggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggccg 343 Query: 379 gcgcgcaggcgctcgtggcgctcaagg---gctccggcgccgccgcgcccaccgtcagga 435 | |||||||||||||||||||||||| |||| | | | |||||| |||| | || Sbjct: 344 ggacgcaggcgctcgtggcgctcaagggcggctcgtcctcgtcggcgcccgccgtgaaga 403 Query: 436 cgtacaacatcaccggctacgtgccgctcggcaaggcctccacgcccatcgcgttcccgg 495 | |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 404 catacaacatcaccggctacgtcgcgctcggcggcgcctcgacgcccatcgcgttcccgg 463 Query: 496 ccaccgacctcgccgccgactccggcagcgccggcaagatccggctctacggcaagctgc 555 |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| Sbjct: 464 ccaccgacctcgccgccgacgagggcagcggcggcaagatccgcctctacggcaagctgc 523 Query: 556 agctgcacagcggcatgaaggccgtcaaccatatatggcaggtcggcacctccgtcaccg 615 |||| |||| || |||||| |||| ||||| | |||||||||||| |||||||||||| Sbjct: 524 agctccacaaggggatgaagtccgtgaaccaggtgtggcaggtcggctcctccgtcaccg 583 Query: 616 ccggggcccccgacaagcacgctttcgcccccggcaacctcgcctccaagtccaagctcg 675 ||| || |||||||||||||| |||| ||| | |||||||||||||||| ||||||||| Sbjct: 584 gcggcgcgcccgacaagcacgcgttcggcccggccaacctcgcctccaaggccaagctcg 643 Query: 676 tcctc 680 ||||| Sbjct: 644 tcctc 648
>ref|NM_001068822.1| Oryza sativa (japonica cultivar-group) Os08g0524400 (Os08g0524400) mRNA, complete cds Length = 771 Score = 387 bits (195), Expect = e-104 Identities = 413/485 (85%), Gaps = 3/485 (0%) Strand = Plus / Plus Query: 199 agaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggccg 258 |||||||||||||||||| | ||||||| |||||||||||| ||| || || || | Sbjct: 95 agaagttcccggcggggagggcgtacgcggcgtgcgaggacctgccgagcctcggcgcgg 154 Query: 259 cgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgcgc 318 ||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||| |||| Sbjct: 155 cgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgttcgtggcggcgc 214 Query: 319 cggcgggggccaacgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccg 378 ||||||| ||| |||||||||||| |||| ||| |||||||| |||||||| ||||||| Sbjct: 215 cggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggccg 274 Query: 379 gcgcgcaggcgctcgtggcgctcaagg---gctccggcgccgccgcgcccaccgtcagga 435 | |||||||||||||||||||||||| |||| | | | |||||| |||| | || Sbjct: 275 ggacgcaggcgctcgtggcgctcaagggcggctcgtcctcgtcggcgcccgccgtgaaga 334 Query: 436 cgtacaacatcaccggctacgtgccgctcggcaaggcctccacgcccatcgcgttcccgg 495 | |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 335 catacaacatcaccggctacgtcgcgctcggcggcgcctcgacgcccatcgcgttcccgg 394 Query: 496 ccaccgacctcgccgccgactccggcagcgccggcaagatccggctctacggcaagctgc 555 |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| Sbjct: 395 ccaccgacctcgccgccgacgagggcagcggcggcaagatccgcctctacggcaagctgc 454 Query: 556 agctgcacagcggcatgaaggccgtcaaccatatatggcaggtcggcacctccgtcaccg 615 |||| |||| || |||||| |||| ||||| | |||||||||||| |||||||||||| Sbjct: 455 agctccacaaggggatgaagtccgtgaaccaggtgtggcaggtcggctcctccgtcaccg 514 Query: 616 ccggggcccccgacaagcacgctttcgcccccggcaacctcgcctccaagtccaagctcg 675 ||| || |||||||||||||| |||| ||| | |||||||||||||||| ||||||||| Sbjct: 515 gcggcgcgcccgacaagcacgcgttcggcccggccaacctcgcctccaaggccaagctcg 574 Query: 676 tcctc 680 ||||| Sbjct: 575 tcctc 579
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 387 bits (195), Expect = e-104 Identities = 413/485 (85%), Gaps = 3/485 (0%) Strand = Plus / Plus Query: 199 agaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggccg 258 |||||||||||||||||| | ||||||| |||||||||||| ||| || || || | Sbjct: 26079484 agaagttcccggcggggagggcgtacgcggcgtgcgaggacctgccgagcctcggcgcgg 26079543 Query: 259 cgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgcgc 318 ||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||| |||| Sbjct: 26079544 cgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgttcgtggcggcgc 26079603 Query: 319 cggcgggggccaacgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccg 378 ||||||| ||| |||||||||||| |||| ||| |||||||| |||||||| ||||||| Sbjct: 26079604 cggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggccg 26079663 Query: 379 gcgcgcaggcgctcgtggcgctcaagg---gctccggcgccgccgcgcccaccgtcagga 435 | |||||||||||||||||||||||| |||| | | | |||||| |||| | || Sbjct: 26079664 ggacgcaggcgctcgtggcgctcaagggcggctcgtcctcgtcggcgcccgccgtgaaga 26079723 Query: 436 cgtacaacatcaccggctacgtgccgctcggcaaggcctccacgcccatcgcgttcccgg 495 | |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 26079724 catacaacatcaccggctacgtcgcgctcggcggcgcctcgacgcccatcgcgttcccgg 26079783 Query: 496 ccaccgacctcgccgccgactccggcagcgccggcaagatccggctctacggcaagctgc 555 |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| Sbjct: 26079784 ccaccgacctcgccgccgacgagggcagcggcggcaagatccgcctctacggcaagctgc 26079843 Query: 556 agctgcacagcggcatgaaggccgtcaaccatatatggcaggtcggcacctccgtcaccg 615 |||| |||| || |||||| |||| ||||| | |||||||||||| |||||||||||| Sbjct: 26079844 agctccacaaggggatgaagtccgtgaaccaggtgtggcaggtcggctcctccgtcaccg 26079903 Query: 616 ccggggcccccgacaagcacgctttcgcccccggcaacctcgcctccaagtccaagctcg 675 ||| || |||||||||||||| |||| ||| | |||||||||||||||| ||||||||| Sbjct: 26079904 gcggcgcgcccgacaagcacgcgttcggcccggccaacctcgcctccaaggccaagctcg 26079963 Query: 676 tcctc 680 ||||| Sbjct: 26079964 tcctc 26079968 Score = 71.9 bits (36), Expect = 4e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 301 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaacccca 360 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 26067143 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 26067084 Query: 361 cgggcgagggcatggccggcgcgcaggcgctcgtggcgct 400 | |||| || ||||||||| ||||||||||||| ||||| Sbjct: 26067083 ccggcggcgggatggccggcacgcaggcgctcgtcgcgct 26067044
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 387 bits (195), Expect = e-104 Identities = 413/485 (85%), Gaps = 3/485 (0%) Strand = Plus / Plus Query: 199 agaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggccg 258 |||||||||||||||||| | ||||||| |||||||||||| ||| || || || | Sbjct: 23415 agaagttcccggcggggagggcgtacgcggcgtgcgaggacctgccgagcctcggcgcgg 23474 Query: 259 cgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgcgc 318 ||||||||| || ||||||| ||||||||||||||| ||| ||||||||||||| |||| Sbjct: 23475 cgctgcactacacgtacgacgcgtccaagtcgtccctgtcggtggcgttcgtggcggcgc 23534 Query: 319 cggcgggggccaacgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccg 378 ||||||| ||| |||||||||||| |||| ||| |||||||| |||||||| ||||||| Sbjct: 23535 cggcgggcgccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggccg 23594 Query: 379 gcgcgcaggcgctcgtggcgctcaagg---gctccggcgccgccgcgcccaccgtcagga 435 | |||||||||||||||||||||||| |||| | | | |||||| |||| | || Sbjct: 23595 ggacgcaggcgctcgtggcgctcaagggcggctcgtcctcgtcggcgcccgccgtgaaga 23654 Query: 436 cgtacaacatcaccggctacgtgccgctcggcaaggcctccacgcccatcgcgttcccgg 495 | |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct: 23655 catacaacatcaccggctacgtcgcgctcggcggcgcctcgacgcccatcgcgttcccgg 23714 Query: 496 ccaccgacctcgccgccgactccggcagcgccggcaagatccggctctacggcaagctgc 555 |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| Sbjct: 23715 ccaccgacctcgccgccgacgagggcagcggcggcaagatccgcctctacggcaagctgc 23774 Query: 556 agctgcacagcggcatgaaggccgtcaaccatatatggcaggtcggcacctccgtcaccg 615 |||| |||| || |||||| |||| ||||| | |||||||||||| |||||||||||| Sbjct: 23775 agctccacaaggggatgaagtccgtgaaccaggtgtggcaggtcggctcctccgtcaccg 23834 Query: 616 ccggggcccccgacaagcacgctttcgcccccggcaacctcgcctccaagtccaagctcg 675 ||| || |||||||||||||| |||| ||| | |||||||||||||||| ||||||||| Sbjct: 23835 gcggcgcgcccgacaagcacgcgttcggcccggccaacctcgcctccaaggccaagctcg 23894 Query: 676 tcctc 680 ||||| Sbjct: 23895 tcctc 23899 Score = 71.9 bits (36), Expect = 4e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 301 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaacccca 360 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 11074 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 11015 Query: 361 cgggcgagggcatggccggcgcgcaggcgctcgtggcgct 400 | |||| || ||||||||| ||||||||||||| ||||| Sbjct: 11014 ccggcggcgggatggccggcacgcaggcgctcgtcgcgct 10975
>gb|AY108865.1| Zea mays PCO075691 mRNA sequence Length = 425 Score = 176 bits (89), Expect = 1e-40 Identities = 220/264 (83%) Strand = Plus / Plus Query: 199 agaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggccg 258 ||||||||||||||||| ||||||| |||||||||||| ||| ||||||| || Sbjct: 162 agaagttcccggcggggcgtgcgtacgcgtcgtgcgaggacctgccgaagctgggcgcgt 221 Query: 259 cgctgcactggacctacgacgagtccaagtcgtccctctcgctggcgttcgtggccgcgc 318 ||||||||||||| ||||||| ||||||| ||||| ||| ||||||||||||| |||| Sbjct: 222 cgctgcactggacgtacgacgcgtccaagagctccctgtcggtggcgttcgtggcggcgc 281 Query: 319 cggcgggggccaacgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccg 378 | |||| ||| |||||||||||| |||| || ||||| ||||||||||||||||||| Sbjct: 282 ccgcggcggcgggcgggtgggtggcgtggggcctgaaccctacgggcgagggcatggccg 341 Query: 379 gcgcgcaggcgctcgtggcgctcaagggctccggcgccgccgcgcccaccgtcaggacgt 438 ||||||||||||| |||||||| ||| |||| ||||| |||||| |||| |||||| Sbjct: 342 gcgcgcaggcgctggtggcgctggcgggggccggggccgcggcgcccgccgtgcggacgt 401 Query: 439 acaacatcaccggctacgtgccgc 462 |||||||||| || ||||| |||| Sbjct: 402 acaacatcacggggtacgtnccgc 425 Score = 46.1 bits (23), Expect = 0.26 Identities = 41/47 (87%) Strand = Plus / Plus Query: 99 gcctccacgatgccgcgccacatcgcgctgctgttgctcctgctcct 145 |||||||| ||||||||||| |||||||||| ||| ||||||||| Sbjct: 65 gcctccacaatgccgcgccatctcgcgctgctcctgcccctgctcct 111
>ref|NM_001070115.1| Oryza sativa (japonica cultivar-group) Os09g0501100 (Os09g0501100) mRNA, complete cds Length = 876 Score = 75.8 bits (38), Expect = 3e-10 Identities = 228/290 (78%), Gaps = 6/290 (2%) Strand = Plus / Plus Query: 332 cgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgct 391 |||||||||| | |||||| |||||||||| ||||| |||||| |||||||||||||| Sbjct: 321 cgggtgggtgtcgtgggcgatcaaccccaccggcgacggcatgaagggcgcgcaggcgct 380 Query: 392 cgtggcgctcaaggg---ctccggcgccgccgcgcccaccgtcaggacgtacaacatcac 448 ||| || ||||||| | ||||||||||||| | ||| | ||||||||| |||| Sbjct: 381 cgtcgccttcaagggcggcgccggcgccgccgcctacgtcgtgaacacgtacaacgtcac 440 Query: 449 cggctacgtgccgctcggcaaggcctccacgcccatcgcgttcccggccaccgacctcgc 508 ||| ||| |||| || | || || ||||||||||||||| |||||||||||||| Sbjct: 441 cgggtacaagccgttccccgccgcgtcaacgcccatcgcgttcaacgccaccgacctcgc 500 Query: 509 cgccgactccggcagcgcc---ggcaagatccggctctacggcaagctgcagctgcacag 565 ||||||| || |||| |||||| | ||||||||||||||||||||||||| | Sbjct: 501 cgccgacgagagcgccgccaccggcaagctgcggctctacggcaagctgcagctgccgcg 560 Query: 566 cggcatgaaggccgtcaaccatatatggcaggtcggcacctccgtcaccg 615 ||| ||| || | || ||||| || |||||||||||| || | ||||||| Sbjct: 561 cgggatggagacggtgaaccacatctggcaggtcggctccacggtcaccg 610 Score = 50.1 bits (25), Expect = 0.016 Identities = 67/81 (82%) Strand = Plus / Plus Query: 199 agaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggccg 258 |||||||||||||||||| || ||||| | ||||| ||||| ||| ||| || || Sbjct: 182 agaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcgcga 241 Query: 259 cgctgcactggacctacgacg 279 ||||||||||||||||||||| Sbjct: 242 cgctgcactggacctacgacg 262
>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0019D02, complete sequence Length = 154692 Score = 75.8 bits (38), Expect = 3e-10 Identities = 228/290 (78%), Gaps = 6/290 (2%) Strand = Plus / Plus Query: 332 cgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgct 391 |||||||||| | |||||| |||||||||| ||||| |||||| |||||||||||||| Sbjct: 150199 cgggtgggtgtcgtgggcgatcaaccccaccggcgacggcatgaagggcgcgcaggcgct 150258 Query: 392 cgtggcgctcaaggg---ctccggcgccgccgcgcccaccgtcaggacgtacaacatcac 448 ||| || ||||||| | ||||||||||||| | ||| | ||||||||| |||| Sbjct: 150259 cgtcgccttcaagggcggcgccggcgccgccgcctacgtcgtgaacacgtacaacgtcac 150318 Query: 449 cggctacgtgccgctcggcaaggcctccacgcccatcgcgttcccggccaccgacctcgc 508 ||| ||| |||| || | || || ||||||||||||||| |||||||||||||| Sbjct: 150319 cgggtacaagccgttccccgccgcgtcaacgcccatcgcgttcaacgccaccgacctcgc 150378 Query: 509 cgccgactccggcagcgcc---ggcaagatccggctctacggcaagctgcagctgcacag 565 ||||||| || |||| |||||| | ||||||||||||||||||||||||| | Sbjct: 150379 cgccgacgagagcgccgccaccggcaagctgcggctctacggcaagctgcagctgccgcg 150438 Query: 566 cggcatgaaggccgtcaaccatatatggcaggtcggcacctccgtcaccg 615 ||| ||| || | || ||||| || |||||||||||| || | ||||||| Sbjct: 150439 cgggatggagacggtgaaccacatctggcaggtcggctccacggtcaccg 150488 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Minus Query: 333 gggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgctc 392 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 140717 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 140658 Query: 393 gt 394 || Sbjct: 140657 gt 140656 Score = 50.1 bits (25), Expect = 0.016 Identities = 67/81 (82%) Strand = Plus / Plus Query: 199 agaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggccg 258 |||||||||||||||||| || ||||| | ||||| ||||| ||| ||| || || Sbjct: 150060 agaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcgcga 150119 Query: 259 cgctgcactggacctacgacg 279 ||||||||||||||||||||| Sbjct: 150120 cgctgcactggacctacgacg 150140
>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBb0004A05, complete sequence Length = 157913 Score = 75.8 bits (38), Expect = 3e-10 Identities = 228/290 (78%), Gaps = 6/290 (2%) Strand = Plus / Plus Query: 332 cgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgct 391 |||||||||| | |||||| |||||||||| ||||| |||||| |||||||||||||| Sbjct: 34873 cgggtgggtgtcgtgggcgatcaaccccaccggcgacggcatgaagggcgcgcaggcgct 34932 Query: 392 cgtggcgctcaaggg---ctccggcgccgccgcgcccaccgtcaggacgtacaacatcac 448 ||| || ||||||| | ||||||||||||| | ||| | ||||||||| |||| Sbjct: 34933 cgtcgccttcaagggcggcgccggcgccgccgcctacgtcgtgaacacgtacaacgtcac 34992 Query: 449 cggctacgtgccgctcggcaaggcctccacgcccatcgcgttcccggccaccgacctcgc 508 ||| ||| |||| || | || || ||||||||||||||| |||||||||||||| Sbjct: 34993 cgggtacaagccgttccccgccgcgtcaacgcccatcgcgttcaacgccaccgacctcgc 35052 Query: 509 cgccgactccggcagcgcc---ggcaagatccggctctacggcaagctgcagctgcacag 565 ||||||| || |||| |||||| | ||||||||||||||||||||||||| | Sbjct: 35053 cgccgacgagagcgccgccaccggcaagctgcggctctacggcaagctgcagctgccgcg 35112 Query: 566 cggcatgaaggccgtcaaccatatatggcaggtcggcacctccgtcaccg 615 ||| ||| || | || ||||| || |||||||||||| || | ||||||| Sbjct: 35113 cgggatggagacggtgaaccacatctggcaggtcggctccacggtcaccg 35162 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Minus Query: 333 gggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgctc 392 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 25391 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 25332 Query: 393 gt 394 || Sbjct: 25331 gt 25330 Score = 50.1 bits (25), Expect = 0.016 Identities = 67/81 (82%) Strand = Plus / Plus Query: 199 agaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggccg 258 |||||||||||||||||| || ||||| | ||||| ||||| ||| ||| || || Sbjct: 34734 agaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcgcga 34793 Query: 259 cgctgcactggacctacgacg 279 ||||||||||||||||||||| Sbjct: 34794 cgctgcactggacctacgacg 34814
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 75.8 bits (38), Expect = 3e-10 Identities = 228/290 (78%), Gaps = 6/290 (2%) Strand = Plus / Plus Query: 332 cgggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgct 391 |||||||||| | |||||| |||||||||| ||||| |||||| |||||||||||||| Sbjct: 19104914 cgggtgggtgtcgtgggcgatcaaccccaccggcgacggcatgaagggcgcgcaggcgct 19104973 Query: 392 cgtggcgctcaaggg---ctccggcgccgccgcgcccaccgtcaggacgtacaacatcac 448 ||| || ||||||| | ||||||||||||| | ||| | ||||||||| |||| Sbjct: 19104974 cgtcgccttcaagggcggcgccggcgccgccgcctacgtcgtgaacacgtacaacgtcac 19105033 Query: 449 cggctacgtgccgctcggcaaggcctccacgcccatcgcgttcccggccaccgacctcgc 508 ||| ||| |||| || | || || ||||||||||||||| |||||||||||||| Sbjct: 19105034 cgggtacaagccgttccccgccgcgtcaacgcccatcgcgttcaacgccaccgacctcgc 19105093 Query: 509 cgccgactccggcagcgcc---ggcaagatccggctctacggcaagctgcagctgcacag 565 ||||||| || |||| |||||| | ||||||||||||||||||||||||| | Sbjct: 19105094 cgccgacgagagcgccgccaccggcaagctgcggctctacggcaagctgcagctgccgcg 19105153 Query: 566 cggcatgaaggccgtcaaccatatatggcaggtcggcacctccgtcaccg 615 ||| ||| || | || ||||| || |||||||||||| || | ||||||| Sbjct: 19105154 cgggatggagacggtgaaccacatctggcaggtcggctccacggtcaccg 19105203 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Minus Query: 333 gggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgctc 392 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 19095431 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 19095372 Query: 393 gt 394 || Sbjct: 19095371 gt 19095370 Score = 50.1 bits (25), Expect = 0.016 Identities = 67/81 (82%) Strand = Plus / Plus Query: 199 agaagttcccggcggggaagacgtacgccaagtgcgaggacctcccgcagctgggggccg 258 |||||||||||||||||| || ||||| | ||||| ||||| ||| ||| || || Sbjct: 19104775 agaagttcccggcggggaggagctacgcgacgtgcgccgacctgccggcgctcggcgcga 19104834 Query: 259 cgctgcactggacctacgacg 279 ||||||||||||||||||||| Sbjct: 19104835 cgctgcactggacctacgacg 19104855
>ref|NM_001068821.1| Oryza sativa (japonica cultivar-group) Os08g0524200 (Os08g0524200) mRNA, complete cds Length = 1418 Score = 71.9 bits (36), Expect = 4e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 301 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaacccca 360 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 256 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 315 Query: 361 cgggcgagggcatggccggcgcgcaggcgctcgtggcgct 400 | |||| || ||||||||| ||||||||||||| ||||| Sbjct: 316 ccggcggcgggatggccggcacgcaggcgctcgtcgcgct 355
>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1186_G01 Length = 112077 Score = 71.9 bits (36), Expect = 4e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 301 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaacccca 360 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 102704 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 102645 Query: 361 cgggcgagggcatggccggcgcgcaggcgctcgtggcgct 400 | |||| || ||||||||| ||||||||||||| ||||| Sbjct: 102644 ccggcggcgggatggccggcacgcaggcgctcgtcgcgct 102605
>dbj|AK058714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D11, full insert sequence Length = 1418 Score = 71.9 bits (36), Expect = 4e-09 Identities = 84/100 (84%) Strand = Plus / Plus Query: 301 tggcgttcgtggccgcgccggcgggggccaacgggtgggtggcctgggcgctcaacccca 360 |||||||||| ||||||||| || | || |||||||||||| |||| ||||||||| | Sbjct: 256 tggcgttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccga 315 Query: 361 cgggcgagggcatggccggcgcgcaggcgctcgtggcgct 400 | |||| || ||||||||| ||||||||||||| ||||| Sbjct: 316 ccggcggcgggatggccggcacgcaggcgctcgtcgcgct 355
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 54.0 bits (27), Expect = 0.001 Identities = 36/39 (92%) Strand = Plus / Minus Query: 477 acgcccatcgcgttcccggccaccgacctcgccgccgac 515 ||||||||||||||| ||||||||||||||||||||| Sbjct: 15360629 acgcccatcgcgttcaacgccaccgacctcgccgccgac 15360591 Score = 48.1 bits (24), Expect = 0.065 Identities = 24/24 (100%) Strand = Plus / Minus Query: 538 ggctctacggcaagctgcagctgc 561 |||||||||||||||||||||||| Sbjct: 15360565 ggctctacggcaagctgcagctgc 15360542
>emb|AL713928.3|CNS07YP5 Oryza sativa chromosome 12, . BAC OSJNBa0036B12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151541 Score = 54.0 bits (27), Expect = 0.001 Identities = 36/39 (92%) Strand = Plus / Minus Query: 477 acgcccatcgcgttcccggccaccgacctcgccgccgac 515 ||||||||||||||| ||||||||||||||||||||| Sbjct: 136022 acgcccatcgcgttcaacgccaccgacctcgccgccgac 135984 Score = 48.1 bits (24), Expect = 0.065 Identities = 24/24 (100%) Strand = Plus / Minus Query: 538 ggctctacggcaagctgcagctgc 561 |||||||||||||||||||||||| Sbjct: 135958 ggctctacggcaagctgcagctgc 135935
>dbj|AK243451.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100070C01, full insert sequence Length = 1560 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Plus Query: 333 gggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgctc 392 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 288 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 347 Query: 393 gt 394 || Sbjct: 348 gt 349
>ref|NM_001070114.1| Oryza sativa (japonica cultivar-group) Os09g0500900 (Os09g0500900) mRNA, complete cds Length = 1185 Score = 52.0 bits (26), Expect = 0.004 Identities = 53/62 (85%) Strand = Plus / Plus Query: 333 gggtgggtggcctgggcgctcaaccccacgggcgagggcatggccggcgcgcaggcgctc 392 ||||||||||| |||| ||||||||| | || || || |||||||| |||||||||||| Sbjct: 226 gggtgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctc 285 Query: 393 gt 394 || Sbjct: 286 gt 287
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 50.1 bits (25), Expect = 0.016 Identities = 28/29 (96%) Strand = Plus / Plus Query: 485 cgcgttcccggccaccgacctcgccgccg 513 |||||||| |||||||||||||||||||| Sbjct: 4917241 cgcgttcctggccaccgacctcgccgccg 4917269
>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence Length = 27905053 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 125 gctgctgttgctcctgctcctc 146 |||||||||||||||||||||| Sbjct: 17922168 gctgctgttgctcctgctcctc 17922189
>ref|XM_001092404.1| PREDICTED: Macaca mulatta hypothetical protein LOC704069 (LOC704069), mRNA Length = 447 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 802 cggccgcggccgcggccggcgt 823 |||||||||||||||||||||| Sbjct: 76 cggccgcggccgcggccggcgt 97
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 755 cgccggcgcggcggcgaccacggcgc 780 ||||||| |||||||||||||||||| Sbjct: 90642 cgccggcacggcggcgaccacggcgc 90617
>gb|AC110792.3| Homo sapiens BAC clone RP11-571I18 from 4, complete sequence Length = 170202 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 883 atgaatgagtactataattagc 904 |||||||||||||||||||||| Sbjct: 145602 atgaatgagtactataattagc 145581
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 755 cgccggcgcggcggcgaccacggcgc 780 ||||||| |||||||||||||||||| Sbjct: 32990043 cgccggcacggcggcgaccacggcgc 32990068
>gb|AC008144.5|AC008144 Drosophila melanogaster, chromosome 3R, region 93F-93F, BAC clone BACR04F21, complete sequence Length = 171226 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 gctgctgttgctcctgctcctc 146 |||||||||||||||||||||| Sbjct: 45504 gctgctgttgctcctgctcctc 45483
>gb|DQ322651.1| Streptomyces sp. FR1 plasmid pFRL1, complete sequence Length = 54288 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 491 cccggccaccgacctcgccgcc 512 |||||||||||||||||||||| Sbjct: 34109 cccggccaccgacctcgccgcc 34130
>gb|CP000462.1| Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome Length = 4744448 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 ggctctacggcaagctgcagc 558 ||||||||||||||||||||| Sbjct: 2628066 ggctctacggcaagctgcagc 2628046
>gb|CP000478.1| Syntrophobacter fumaroxidans MPOB, complete genome Length = 4990251 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 ctgttgctcctgctcctcgtg 149 ||||||||||||||||||||| Sbjct: 4885198 ctgttgctcctgctcctcgtg 4885178
>emb|CT834971.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN024H03, full insert sequence Length = 874 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 806 cgcggccgcggccggcgtgtcggcg 830 ||||||||||||||||| ||||||| Sbjct: 518 cgcggccgcggccggcgcgtcggcg 542
>dbj|AK241063.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065065F16, full insert sequence Length = 1100 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 806 cgcggccgcggccggcgtgtcggcg 830 ||||||||||||||||| ||||||| Sbjct: 580 cgcggccgcggccggcgcgtcggcg 556
>ref|NM_001054330.1| Oryza sativa (japonica cultivar-group) Os02g0691500 (Os02g0691500) mRNA, complete cds Length = 1566 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 799 cgtcggccgcggccgcggccg 819 ||||||||||||||||||||| Sbjct: 255 cgtcggccgcggccgcggccg 275
>ref|NM_001051159.1| Oryza sativa (japonica cultivar-group) Os01g0817600 (Os01g0817600) mRNA, complete cds Length = 1002 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 806 cgcggccgcggccggcgtgtcggcg 830 ||||||||||||||||| ||||||| Sbjct: 759 cgcggccgcggccggcgcgtcggcg 783
>ref|XM_001209232.1| Aspergillus terreus NIH2624 conserved hypothetical protein (ATEG_01867) mRNA, complete cds Length = 4059 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 799 cgtcggccgcggccgcggccg 819 ||||||||||||||||||||| Sbjct: 3994 cgtcggccgcggccgcggccg 3974
>ref|XM_001146198.1| PREDICTED: Pan troglodytes hypothetical protein LOC742791 (LOC742791), mRNA Length = 669 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 802 cggccgcggccgcggccggcg 822 ||||||||||||||||||||| Sbjct: 656 cggccgcggccgcggccggcg 636
>ref|XM_519770.2| PREDICTED: Pan troglodytes myo-inositol monophosphatase A3 (IMPAD1), mRNA Length = 7255 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 796 ccccgtcggccgcggccgcgg 816 ||||||||||||||||||||| Sbjct: 486 ccccgtcggccgcggccgcgg 466
>dbj|AB103620.1| Homo sapiens STG, SPR1, SEEK1 genes for hypothetical proteins, S protein, complete cds Length = 30917 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 16159 gcggaggtggcagtgggcatg 16179
>emb|AM260479.1| Ralstonia eutropha H16 chromosome 1 Length = 4052032 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 798 ccgtcggccgcggccgcggcc 818 ||||||||||||||||||||| Sbjct: 564325 ccgtcggccgcggccgcggcc 564305
>gb|DQ116941.2| Streptomyces antibioticus acetyltransferase gene, partial cds; hypothetical protein and Orf0 genes, complete cds; chlorothricin biosynthetic gene cluster, complete sequence; ChlC7, ChlB1, ChlB4, ChlB2, ChlB3, ChlH, ChlC5, ChlC4, ChlC3, ChlI, ChlJ, ChlF2, ChlK, ChlC2, ChlC1, ChlC6, ChlL, peptidase M20, putative helicase, and ankyrin genes, complete cds; tankyrase1-binding protein gene, partial cds; and unknown gene Length = 111968 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 408 tccggcgccgccgcgcccaccgtca 432 ||||||||||||||||| ||||||| Sbjct: 100416 tccggcgccgccgcgccgaccgtca 100440
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gctgctgttgctcctgctcct 145 ||||||||||||||||||||| Sbjct: 4270953 gctgctgttgctcctgctcct 4270973
>ref|XM_001086527.1| PREDICTED: Macaca mulatta similar to myo-inositol monophosphatase A3 (LOC696893), mRNA Length = 7211 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 796 ccccgtcggccgcggccgcgg 816 ||||||||||||||||||||| Sbjct: 448 ccccgtcggccgcggccgcgg 428
>gb|AC167968.5| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940121D9, complete sequence Length = 108830 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 ggctctacggcaagctgcagc 558 ||||||||||||||||||||| Sbjct: 88863 ggctctacggcaagctgcagc 88843
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 750 agcgacgccggcgcggcggcg 770 ||||||||||||||||||||| Sbjct: 4609775 agcgacgccggcgcggcggcg 4609755
>ref|XM_361363.1| Magnaporthe grisea 70-15 hypothetical protein (MG03837.4) partial mRNA Length = 2733 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 gctgctgttgctcctgctcct 145 ||||||||||||||||||||| Sbjct: 2407 gctgctgttgctcctgctcct 2387
>gb|U00034.1| Caenorhabditis elegans cosmid C06E8, complete sequence Length = 26435 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 cgccgccgcgcccaccgtcag 433 ||||||||||||||||||||| Sbjct: 4968 cgccgccgcgcccaccgtcag 4988
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 807 gcggccgcggccggcgtgtcg 827 ||||||||||||||||||||| Sbjct: 2300446 gcggccgcggccggcgtgtcg 2300426
>gb|CP000145.1| Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence Length = 114178 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 367 agggcatggccggcgcgcaggcgct 391 |||||||| |||||||||||||||| Sbjct: 38410 agggcatgaccggcgcgcaggcgct 38434
>gb|BT018781.1| Zea mays clone EL01N0526F09.d mRNA sequence Length = 2283 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 803 ggccgcggccgcggccggcgt 823 ||||||||||||||||||||| Sbjct: 320 ggccgcggccgcggccggcgt 340
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 804 gccgcggccgcggccggcgtg 824 ||||||||||||||||||||| Sbjct: 1251843 gccgcggccgcggccggcgtg 1251823
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 804 gccgcggccgcggccggcgtg 824 ||||||||||||||||||||| Sbjct: 2253520 gccgcggccgcggccggcgtg 2253540
>gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001/HLA-Cw0602 genomic sequence Length = 346809 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 249900 gcggaggtggcagtgggcatg 249880
>gb|DQ249181.1| Homo sapiens isolate 541CLS37 haplotype HLA-B070201/HLA-Cw07020103 genomic sequence Length = 341361 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 252955 gcggaggtggcagtgggcatg 252935
>gb|DQ249180.1| Homo sapiens isolate 495CLS44 haplotype HLA-B570101/HLA-Cw0602 genomic sequence Length = 265420 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 253061 gcggaggtggcagtgggcatg 253041
>gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic sequence Length = 338517 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 249268 gcggaggtggcagtgggcatg 249248
>gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B15010101/HLA-Cw030401 genomic sequence Length = 351341 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 264893 gcggaggtggcagtgggcatg 264873
>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic sequence Length = 363675 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 264671 gcggaggtggcagtgggcatg 264651
>gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic sequence Length = 328871 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 250252 gcggaggtggcagtgggcatg 250232
>gb|DQ249174.1| Homo sapiens isolate 144CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic sequence Length = 338544 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 260958 gcggaggtggcagtgggcatg 260938
>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic sequence Length = 336776 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 243770 gcggaggtggcagtgggcatg 243750
>gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic sequence Length = 342745 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 241568 gcggaggtggcagtgggcatg 241548
>dbj|AB202103.1| Homo sapiens C6orf15, C6orf16, CDSN, C6orf17 genes for chromosome 6 open reading frame 15, chromosome 6 open reading frame 16, corneodesmosin, chromosome 6 open reading frame 17, complete cds Length = 30921 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 16159 gcggaggtggcagtgggcatg 16179
>gb|AF036695.2| Caenorhabditis elegans cosmid F16B3, complete sequence Length = 36818 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 989 tattcttttttcctattttcg 1009 ||||||||||||||||||||| Sbjct: 36049 tattcttttttcctattttcg 36029
>gb|AE005910.1| Caulobacter crescentus CB15 section 236 of 359 of the complete genome Length = 13852 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 750 agcgacgccggcgcggcggcg 770 ||||||||||||||||||||| Sbjct: 9586 agcgacgccggcgcggcggcg 9566
>tpg|BK003676.1| TPA_inf: Drosophila melanogaster HDC05200 (HDC05200) gene, complete cds Length = 4612 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gctgctgttgctcctgctcct 145 ||||||||||||||||||||| Sbjct: 2864 gctgctgttgctcctgctcct 2884
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 799 cgtcggccgcggccgcggccg 819 ||||||||||||||||||||| Sbjct: 28408917 cgtcggccgcggccgcggccg 28408937
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 806 cgcggccgcggccggcgtgtcggcg 830 ||||||||||||||||| ||||||| Sbjct: 34794963 cgcggccgcggccggcgcgtcggcg 34794987
>emb|CR938714.3| Human DNA sequence from clone DAMC-338G21 on chromosome 6, complete sequence Length = 10602 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 1291 gcggaggtggcagtgggcatg 1311
>emb|AL773544.5| Human DNA sequence from clone DAQB-185I1 on chromosome 6 Contains the C6orf15 gene for chromosome 6 open reading frame 15, the CDSN gene for corneodesmosin, the PSORS1C1 gene for psoriasis susceptibility 1 candidate 1, the PSORS1C2 gene for psoriasis susceptibility 1 candidate 2, the POLR2LP pseudogene for polymerase (RNA) II (DNA directed) polypeptide L, the C6orf18 gene for chromosome 6 open reading frame 18, the TCF19 gene for transcription factor 19 (SC1), the POU5F1 gene for POU domain, class 5, transcription factor 1, the PSORS1C3 gene for psoriasis susceptibility 1 candidate 3, and 1 CpG island, complete sequence Length = 113388 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 47881 gcggaggtggcagtgggcatg 47901
>emb|AL662844.12| Human DNA sequence from clone XXbac-299F13 on chromosome 6 contains the gene for STG protein, the CDSN gene for corneodesmosin, the gene for SEEK1 protein, the gene for SPR1 protein, the gene for HCR, the TCF19 gene for transcription factor 19, the POU5F1 gene for POU domain, class 5, transcription factor 1, a putative novel transcript and four CpG islands, complete sequence Length = 204298 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 65556 gcggaggtggcagtgggcatg 65576
>emb|AL662867.5| Human DNA sequence from clone XXbac-34D1 on chromosome 6 contains the genes for STG protein, SEEK1 protein, SPR1 protein and the CDSN gene for corneodesmosin, complete sequence Length = 70288 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 55469 gcggaggtggcagtgggcatg 55489
>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1148D12 Length = 132060 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 806 cgcggccgcggccggcgtgtcggcg 830 ||||||||||||||||| ||||||| Sbjct: 110203 cgcggccgcggccggcgcgtcggcg 110227
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 983 gctgcctattcttttttcctatttt 1007 |||||||||||||| |||||||||| Sbjct: 3313718 gctgcctattctttgttcctatttt 3313694
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 804 gccgcggccgcggccggcgtg 824 ||||||||||||||||||||| Sbjct: 2121189 gccgcggccgcggccggcgtg 2121169
>emb|CR936880.3| Human DNA sequence from clone DAMC-257B19 on chromosome 6, complete sequence Length = 6810 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 6162 gcggaggtggcagtgggcatg 6182
>ref|XM_397369.2| PREDICTED: Apis mellifera similar to F54C1.5a (LOC413930), mRNA Length = 1956 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 941 gaacaatataatgttccaatt 961 ||||||||||||||||||||| Sbjct: 1640 gaacaatataatgttccaatt 1620
>gb|AC091388.1|AC091388 Drosophila melanogaster, chromosome 2R, region 44C-44D, BAC clone BACR14B02, complete sequence Length = 194036 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gctgctgttgctcctgctcct 145 ||||||||||||||||||||| Sbjct: 148552 gctgctgttgctcctgctcct 148572
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 816030 gcggaggtggcagtgggcatg 816010
>emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chromosome 6, complete sequence Length = 135396 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 117590 gcggaggtggcagtgggcatg 117610
>emb|CR753819.5| Human DNA sequence from clone DADB-141O4 on chromosome 6, complete sequence Length = 81418 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 47334 gcggaggtggcagtgggcatg 47354
>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0454H12 Length = 161004 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 806 cgcggccgcggccggcgtgtcggcg 830 ||||||||||||||||| ||||||| Sbjct: 54135 cgcggccgcggccggcgcgtcggcg 54159
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 799 cgtcggccgcggccgcggccg 819 ||||||||||||||||||||| Sbjct: 33038 cgtcggccgcggccgcggccg 33058
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 4.0 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 359 cacgggcgagggcatggccggcgcgcaggcgct 391 |||| ||||||||| |||||||||||||||||| Sbjct: 1513576 cacgtgcgagggca-ggccggcgcgcaggcgct 1513607
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 cggcgccgccgcgcccaccgt 430 ||||||||||||||||||||| Sbjct: 2557819 cggcgccgccgcgcccaccgt 2557839 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 802 cggccgcggccgcggccggcg 822 ||||||||||||||||||||| Sbjct: 5725482 cggccgcggccgcggccggcg 5725502
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 752 cgacgccggcgcggcggcgac 772 ||||||||||||||||||||| Sbjct: 100763 cgacgccggcgcggcggcgac 100743
>dbj|AK060695.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D07, full insert sequence Length = 1566 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 799 cgtcggccgcggccgcggccg 819 ||||||||||||||||||||| Sbjct: 255 cgtcggccgcggccgcggccg 275
>dbj|AB088114.1| Homo sapiens STG, S, SPR1, SEEK1 genes Length = 30911 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 16157 gcggaggtggcagtgggcatg 16177
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 cgatgccgcgccacatcgcgc 126 ||||||||||||||||||||| Sbjct: 3201171 cgatgccgcgccacatcgcgc 3201151
>gb|AY315822.1| Zea mays non-photosynthetic NADP-malic enzyme mRNA, complete cds Length = 1935 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 803 ggccgcggccgcggccggcgt 823 ||||||||||||||||||||| Sbjct: 213 ggccgcggccgcggccggcgt 233
>gb|U39958.1|ZMU39958 Zea mays NADP-malic enzyme root isoform mRNA, complete cds Length = 2310 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 803 ggccgcggccgcggccggcgt 823 ||||||||||||||||||||| Sbjct: 302 ggccgcggccgcggccggcgt 322
>gb|AC006421.1|AC006421 Drosophila melanogaster, chromosome 2R, region 44C1-44C5, P1 clones DS08614 and DS00667, complete sequence Length = 100575 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gctgctgttgctcctgctcct 145 ||||||||||||||||||||| Sbjct: 63497 gctgctgttgctcctgctcct 63517
>gb|AC004195.1|AC004195 Homo sapiens clone UWGC:y24c027 from 6p21, complete sequence Length = 40878 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 39346 gcggaggtggcagtgggcatg 39326
>gb|AC006163.1|AC006163 Homo sapiens clone UWGC:y24c203 from 6p21, complete sequence Length = 44379 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 1463 gcggaggtggcagtgggcatg 1443
>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete sequence Length = 226251 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 gctgctgttgctcctgctcct 145 ||||||||||||||||||||| Sbjct: 149227 gctgctgttgctcctgctcct 149207 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 gctgctgttgctcctgctcct 145 ||||||||||||||||||||| Sbjct: 149362 gctgctgttgctcctgctcct 149342
>gb|AC101660.25| Mus musculus chromosome 15, clone RP23-4I22, complete sequence Length = 188464 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 acaagtcctcactcaccactg 71 ||||||||||||||||||||| Sbjct: 51172 acaagtcctcactcaccactg 51192
>dbj|AB023060.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:TY1C2, complete sequence Length = 39196 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 903 gcggaggtggcagtgggcatg 923 ||||||||||||||||||||| Sbjct: 22895 gcggaggtggcagtgggcatg 22875 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 134,672,851 Number of extensions: 7795120 Number of successful extensions: 219486 Number of sequences better than 10.0: 92 Number of HSP's gapped: 219472 Number of HSP's successfully gapped: 118 Length of query: 1056 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1033 Effective length of database: 18,503,978,556 Effective search space: 19114609848348 Effective search space used: 19114609848348 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)