ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf93h20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1AK073609:Os04g0511600 35 0.056
2AK067002:Os04g0511600 35 0.056
3Os08g0133700:Os08g0133700 30 1.4
4AK110062: 29 2.3
5Os04g0205900:Os04g0205900 29 3.0
6AY224492:Os03g0273800 28 4.0
7Os01g0257500:Os01g0257500 28 6.8 
>AK073609:Os04g0511600 |
          Length = 730
 Score = 34.7 bits (78), Expect = 0.056
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 260 SDQAPVVPQRHVAPGRALRDGAVGPSGDARRTAVVD 367
           S    +VPQRHV   + +R+G + PS  A+R+  VD
Sbjct: 223 SSTPSIVPQRHVGQRKLVRNGCISPSNIAKRSLKVD 258
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>AK067002:Os04g0511600 |
          Length = 636

 Score = 34.7 bits (78), Expect = 0.056
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 260 SDQAPVVPQRHVAPGRALRDGAVGPSGDARRTAVVD 367
           S    +VPQRHV   + +R+G + PS  A+R+  VD
Sbjct: 223 SSTPSIVPQRHVGQRKLVRNGCISPSNIAKRSLKVD 258
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>Os08g0133700:Os08g0133700 |
          Length = 1391

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +3

Query: 279  FRSAMWRLAELCVTVLSGPPGTPDAPPSWTGVEPC 383
            FR   W L   C   +S P G P  PP  TGV  C
Sbjct: 1229 FRLHGWPLCRRCWASMSSPTGLPSPPP--TGVSAC 1261
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>AK110062: |
          Length = 998

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 375 PLPSTTAVRRASPEGPTAPSRRARPGATWR 286
           P   T+A R A PE P+A S R RP   +R
Sbjct: 157 PFKDTSAQRSAFPEPPSASSSRTRPPEAFR 186
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>Os04g0205900:Os04g0205900 |
          Length = 1076

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = +3

Query: 279 FRSAMWRLAELCVTVLSGPPGTPDAPPSWTGVEPC 383
           FR   W L   C    S P G P  PP  TGV  C
Sbjct: 891 FRLHGWPLCRRCWASTSSPTGLPSPPP--TGVSAC 923



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = +3

Query: 279 FRSAMWRLAELCVTVLSGPPGTPDAPPSWTGVEPC 383
           FR   W L   C    S P G P  PP  TGV  C
Sbjct: 684 FRLHGWPLCRHCWASTSSPTGLPSPPP--TGVSAC 716
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>AY224492:Os03g0273800 |
          Length = 163

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 412 SAAGRNGAAKHGSTPVHDGGASGVPGG 332
           +AAG     + G  P H GGA+G  GG
Sbjct: 53  AAAGEGRGPRAGEHPQHQGGAAGAVGG 79
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>Os01g0257500:Os01g0257500 |
          Length = 738

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 273 RWFRSAMWRLAELCVTVLSGPPGTPDAPPS 362
           R FR   W L   C    S P G P  PPS
Sbjct: 340 RCFRLHGWPLCRRCWASTSSPTGLPSPPPS 369


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 14,719,599
Number of extensions: 277132
Number of successful extensions: 1353
Number of sequences better than 10.0: 7
Number of HSP's gapped: 1353
Number of HSP's successfully gapped: 8
Length of query: 213
Length of database: 15,399,855
Length adjustment: 96
Effective length of query: 117
Effective length of database: 11,555,919
Effective search space: 1352042523
Effective search space used: 1352042523
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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