ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf9f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001066955.1| Oryza sativa (japonica cultivar-group) Os07g... 438 e-119
2dbj|AK070897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 438 e-119
3dbj|AK059275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 438 e-119
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 281 2e-72
5dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D... 281 2e-72
6dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic D... 281 2e-72
7gb|AY107920.1| Zea mays PCO093798 mRNA sequence 226 8e-56
8emb|CT834490.1| Oryza sativa (indica cultivar-group) cDNA clone:... 165 3e-37
9gb|AY618478.1| Zea mays isolate mon03077 Ac insertion site 98 5e-17
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 5e-08
11dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic D... 68 5e-08
12ref|NM_112062.2| Arabidopsis thaliana catalytic/ oxidoreductase,... 64 7e-07
13ref|NM_202563.1| Arabidopsis thaliana TGA6; DNA binding / transc... 64 7e-07
14gb|AY064675.1| Arabidopsis thaliana unknown protein (F28J15.12) ... 64 7e-07
15gb|AY054576.1| Arabidopsis thaliana unknown protein (F28J15.12) ... 64 7e-07
16gb|AC069472.1|AC069472 Arabidopsis thaliana chromosome 3 BAC F28... 64 7e-07
17dbj|AP002047.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 64 7e-07
18gb|DQ383772.1| Guillardia theta chloroplast photosystem II 33 kD... 48 0.042
19emb|AJ821800.1| Guillardia theta partial mRNA for oxygen-evolvin... 48 0.042
20ref|XM_001182382.1| PREDICTED: Strongylocentrotus purpuratus hyp... 46 0.17
21ref|XM_001200118.1| PREDICTED: Strongylocentrotus purpuratus hyp... 46 0.17
22gb|DQ244943.1| Zea mays clone 11864 mRNA sequence 44 0.66
23ref|XM_994816.1| PREDICTED: Mus musculus splicing factor proline... 44 0.66
24ref|XM_981759.1| PREDICTED: Mus musculus splicing factor proline... 44 0.66
25ref|NM_023603.2| Mus musculus splicing factor proline/glutamine ... 44 0.66
26gb|AY034062.1| Mus musculus PTB-associated splicing factor mRNA,... 44 0.66
27gb|BC080848.1| Mus musculus cDNA clone IMAGE:6813811, containing... 44 0.66
28emb|AL606985.26| Mouse DNA sequence from clone RP23-153M14 on ch... 44 0.66
29gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome 42 2.6

>ref|NM_001066955.1| Oryza sativa (japonica cultivar-group) Os07g0640100 (Os07g0640100)
           mRNA, complete cds
          Length = 820
 Score =  438 bits (221), Expect = e-119
 Identities = 344/385 (89%)
 Strand = Plus / Plus

                                                                       
Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228
           ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct: 134 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 193

                                                                       
Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 194 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 253

                                                                       
Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348
           ||||||||||||||||| |||||  ||||||||||| ||| |||| || || ||||| | 
Sbjct: 254 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 313

                                                                       
Query: 349 aagaaccagggcgtctccgaccccaaggtcattgatatgcttctcttcaacgggatggag 408
           ||||||||||||||| |  |||||||||||||||||||||| || || || |||||||||
Sbjct: 314 aagaaccagggcgtcactaaccccaaggtcattgatatgctcctgtttaaggggatggag 373

                                                                       
Query: 409 gagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattgggcaatatgtg 468
           ||||||  |||||| ||||| ||||| ||||||||||| ||| |||| ||||||||||||
Sbjct: 374 gagctgggcaacatcaccgaacacgcgaagcagcgccatcacgtcatcgggcaatatgtg 433

                                                                       
Query: 469 gtgggccacaaggggctggtgcaggacctggaaaaggaccaagggagctccgagttcctg 528
           || ||||| ||||| |||||||||||  |||| || |||||||||  ||| || ||||||
Sbjct: 434 gtcggccaaaagggactggtgcaggatatggagaaagaccaagggtcctcagacttcctg 493

                                    
Query: 529 aagaaattctacaccagcaattact 553
           |||||||||||||| ||||||||||
Sbjct: 494 aagaaattctacactagcaattact 518



to top

>dbj|AK070897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073H14, full
           insert sequence
          Length = 823

 Score =  438 bits (221), Expect = e-119
 Identities = 344/385 (89%)
 Strand = Plus / Plus

                                                                       
Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228
           ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct: 137 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 196

                                                                       
Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 197 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 256

                                                                       
Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348
           ||||||||||||||||| |||||  ||||||||||| ||| |||| || || ||||| | 
Sbjct: 257 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 316

                                                                       
Query: 349 aagaaccagggcgtctccgaccccaaggtcattgatatgcttctcttcaacgggatggag 408
           ||||||||||||||| |  |||||||||||||||||||||| || || || |||||||||
Sbjct: 317 aagaaccagggcgtcactaaccccaaggtcattgatatgctcctgtttaaggggatggag 376

                                                                       
Query: 409 gagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattgggcaatatgtg 468
           ||||||  |||||| ||||| ||||| ||||||||||| ||| |||| ||||||||||||
Sbjct: 377 gagctgggcaacatcaccgaacacgcgaagcagcgccatcacgtcatcgggcaatatgtg 436

                                                                       
Query: 469 gtgggccacaaggggctggtgcaggacctggaaaaggaccaagggagctccgagttcctg 528
           || ||||| ||||| |||||||||||  |||| || |||||||||  ||| || ||||||
Sbjct: 437 gtcggccaaaagggactggtgcaggatatggagaaagaccaagggtcctcagacttcctg 496

                                    
Query: 529 aagaaattctacaccagcaattact 553
           |||||||||||||| ||||||||||
Sbjct: 497 aagaaattctacactagcaattact 521



to top

>dbj|AK059275.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C03, full
           insert sequence
          Length = 800

 Score =  438 bits (221), Expect = e-119
 Identities = 344/385 (89%)
 Strand = Plus / Plus

                                                                       
Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228
           ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct: 155 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 214

                                                                       
Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 215 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 274

                                                                       
Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348
           ||||||||||||||||| |||||  ||||||||||| ||| |||| || || ||||| | 
Sbjct: 275 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 334

                                                                       
Query: 349 aagaaccagggcgtctccgaccccaaggtcattgatatgcttctcttcaacgggatggag 408
           ||||||||||||||| |  |||||||||||||||||||||| || || || |||||||||
Sbjct: 335 aagaaccagggcgtcactaaccccaaggtcattgatatgctcctgtttaaggggatggag 394

                                                                       
Query: 409 gagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattgggcaatatgtg 468
           ||||||  |||||| ||||| ||||| ||||||||||| ||| |||| ||||||||||||
Sbjct: 395 gagctgggcaacatcaccgaacacgcgaagcagcgccatcacgtcatcgggcaatatgtg 454

                                                                       
Query: 469 gtgggccacaaggggctggtgcaggacctggaaaaggaccaagggagctccgagttcctg 528
           || ||||| ||||| |||||||||||  |||| || |||||||||  ||| || ||||||
Sbjct: 455 gtcggccaaaagggactggtgcaggatatggagaaagaccaagggtcctcagacttcctg 514

                                    
Query: 529 aagaaattctacaccagcaattact 553
           |||||||||||||| ||||||||||
Sbjct: 515 aagaaattctacactagcaattact 539



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score =  281 bits (142), Expect = 2e-72
 Identities = 193/210 (91%)
 Strand = Plus / Plus

                                                                            
Query: 169      ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228
                ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct: 26584123 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 26584182

                                                                            
Query: 229      cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288
                |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 26584183 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 26584242

                                                                            
Query: 289      aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348
                ||||||||||||||||| |||||  ||||||||||| ||| |||| || || ||||| | 
Sbjct: 26584243 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 26584302

                                              
Query: 349      aagaaccagggcgtctccgaccccaaggtc 378
                ||||||||||||||| |  |||||||||||
Sbjct: 26584303 aagaaccagggcgtcactaaccccaaggtc 26584332



 Score =  167 bits (84), Expect = 7e-38
 Identities = 156/180 (86%)
 Strand = Plus / Plus

                                                                            
Query: 374      aggtcattgatatgcttctcttcaacgggatggaggagctgaacaacattaccgagcacg 433
                |||||||||||||||| || || || |||||||||||||||  |||||| ||||| ||||
Sbjct: 26585797 aggtcattgatatgctcctgtttaaggggatggaggagctgggcaacatcaccgaacacg 26585856

                                                                            
Query: 434      caaagcagcgccaccacatcattgggcaatatgtggtgggccacaaggggctggtgcagg 493
                | ||||||||||| ||| |||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct: 26585857 cgaagcagcgccatcacgtcatcgggcaatatgtggtcggccaaaagggactggtgcagg 26585916

                                                                            
Query: 494      acctggaaaaggaccaagggagctccgagttcctgaagaaattctacaccagcaattact 553
                |  |||| || |||||||||  ||| || |||||||||||||||||||| ||||||||||
Sbjct: 26585917 atatggagaaagaccaagggtcctcagacttcctgaagaaattctacactagcaattact 26585976



to top

>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1340_C08
          Length = 192167

 Score =  281 bits (142), Expect = 2e-72
 Identities = 193/210 (91%)
 Strand = Plus / Plus

                                                                          
Query: 169    ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228
              ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct: 129394 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 129453

                                                                          
Query: 229    cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288
              |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 129454 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 129513

                                                                          
Query: 289    aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348
              ||||||||||||||||| |||||  ||||||||||| ||| |||| || || ||||| | 
Sbjct: 129514 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 129573

                                            
Query: 349    aagaaccagggcgtctccgaccccaaggtc 378
              ||||||||||||||| |  |||||||||||
Sbjct: 129574 aagaaccagggcgtcactaaccccaaggtc 129603



 Score =  167 bits (84), Expect = 7e-38
 Identities = 156/180 (86%)
 Strand = Plus / Plus

                                                                          
Query: 374    aggtcattgatatgcttctcttcaacgggatggaggagctgaacaacattaccgagcacg 433
              |||||||||||||||| || || || |||||||||||||||  |||||| ||||| ||||
Sbjct: 131068 aggtcattgatatgctcctgtttaaggggatggaggagctgggcaacatcaccgaacacg 131127

                                                                          
Query: 434    caaagcagcgccaccacatcattgggcaatatgtggtgggccacaaggggctggtgcagg 493
              | ||||||||||| ||| |||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct: 131128 cgaagcagcgccatcacgtcatcgggcaatatgtggtcggccaaaagggactggtgcagg 131187

                                                                          
Query: 494    acctggaaaaggaccaagggagctccgagttcctgaagaaattctacaccagcaattact 553
              |  |||| || |||||||||  ||| || |||||||||||||||||||| ||||||||||
Sbjct: 131188 atatggagaaagaccaagggtcctcagacttcctgaagaaattctacactagcaattact 131247



to top

>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0524G08
          Length = 146690

 Score =  281 bits (142), Expect = 2e-72
 Identities = 193/210 (91%)
 Strand = Plus / Plus

                                                                        
Query: 169  ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228
            ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct: 1727 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 1786

                                                                        
Query: 229  cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1787 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 1846

                                                                        
Query: 289  aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348
            ||||||||||||||||| |||||  ||||||||||| ||| |||| || || ||||| | 
Sbjct: 1847 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 1906

                                          
Query: 349  aagaaccagggcgtctccgaccccaaggtc 378
            ||||||||||||||| |  |||||||||||
Sbjct: 1907 aagaaccagggcgtcactaaccccaaggtc 1936



 Score =  167 bits (84), Expect = 7e-38
 Identities = 156/180 (86%)
 Strand = Plus / Plus

                                                                        
Query: 374  aggtcattgatatgcttctcttcaacgggatggaggagctgaacaacattaccgagcacg 433
            |||||||||||||||| || || || |||||||||||||||  |||||| ||||| ||||
Sbjct: 3401 aggtcattgatatgctcctgtttaaggggatggaggagctgggcaacatcaccgaacacg 3460

                                                                        
Query: 434  caaagcagcgccaccacatcattgggcaatatgtggtgggccacaaggggctggtgcagg 493
            | ||||||||||| ||| |||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct: 3461 cgaagcagcgccatcacgtcatcgggcaatatgtggtcggccaaaagggactggtgcagg 3520

                                                                        
Query: 494  acctggaaaaggaccaagggagctccgagttcctgaagaaattctacaccagcaattact 553
            |  |||| || |||||||||  ||| || |||||||||||||||||||| ||||||||||
Sbjct: 3521 atatggagaaagaccaagggtcctcagacttcctgaagaaattctacactagcaattact 3580



to top

>gb|AY107920.1| Zea mays PCO093798 mRNA sequence
          Length = 940

 Score =  226 bits (114), Expect = 8e-56
 Identities = 320/388 (82%), Gaps = 3/388 (0%)
 Strand = Plus / Plus

                                                                       
Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228
           ||||||||||| || |||||||| || ||||||||||| ||| ||| |||||| ||||||
Sbjct: 166 ttcacgatgcgggcagtgaaggtgcctccgaactcggcctcgctggaggaggcccggcac 225

                                                                       
Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288
           ||||| ||||| ||||||| |||||| |||||| | |||||| || ||||||||||||||
Sbjct: 226 cgcgtcttcgatttcttcaagcaggcatgccgctctatccccaccgtcatggagatctac 285

                                                                       
Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348
           |||||||||||||| || || ||| | ||||||||| | | |||| |  || ||||| | 
Sbjct: 286 aacctcgacgacgttgtcacgccctctcagctccgctcgaccatcgctaaggagatccgt 345

                                                                       
Query: 349 aagaaccagggcgtctccgaccccaaggtcattgatatgcttctcttcaacgggatggag 408
           || ||||||  |||| || |||||||||| |||||||||||||| ||||||| || ||||
Sbjct: 346 aaaaaccagaacgtcaccaaccccaaggtgattgatatgcttctgttcaacgcgacggag 405

                                                                       
Query: 409 gagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattgggcaatatgtg 468
           ||||||||||||||   ||| || |||||||||||||| ||  | |||||||| ||||||
Sbjct: 406 gagctgaacaacatagtcgaacatgcaaagcagcgccatcatgtgattgggcagtatgtg 465

                                                                       
Query: 469 gtgggccacaaggggctggtgcaggacctgg---aaaaggaccaagggagctccgagttc 525
            | |||||  |||| |||||||| || ||||     ||||| | ||||| ||| || || 
Sbjct: 466 atcggccaagagggcctggtgcacgagctggggtcgaaggatctagggaactctgacttt 525

                                       
Query: 526 ctgaagaaattctacaccagcaattact 553
           ||||||||||||||||| ||||||||||
Sbjct: 526 ctgaagaaattctacacaagcaattact 553



to top

>emb|CT834490.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN090G20, full
           insert sequence
          Length = 591

 Score =  165 bits (83), Expect = 3e-37
 Identities = 155/179 (86%)
 Strand = Plus / Plus

                                                                       
Query: 375 ggtcattgatatgcttctcttcaacgggatggaggagctgaacaacattaccgagcacgc 434
           ||||||||||||||| || || || |||||||||||||||  |||||| ||||| |||||
Sbjct: 140 ggtcattgatatgctcctgtttaaggggatggaggagctgggcaacatcaccgaacacgc 199

                                                                       
Query: 435 aaagcagcgccaccacatcattgggcaatatgtggtgggccacaaggggctggtgcagga 494
            ||||||||||| ||| |||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 200 gaagcagcgccatcacgtcatcgggcaatatgtggtcggccaaaagggactggtgcagga 259

                                                                      
Query: 495 cctggaaaaggaccaagggagctccgagttcctgaagaaattctacaccagcaattact 553
             |||| || |||||||||  ||| || |||||||||||||||||||| ||||||||||
Sbjct: 260 tatggagaaagaccaagggtcctcagacttcctgaagaaattctacactagcaattact 318



to top

>gb|AY618478.1| Zea mays isolate mon03077 Ac insertion site
          Length = 1147

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 138/167 (82%), Gaps = 3/167 (1%)
 Strand = Plus / Minus

                                                                       
Query: 379 attgatatgcttctcttcaacgggatggaggagctgaacaacattaccgagcacgcaaag 438
           |||||||||||||| ||||||| || ||||||||||||||||||   ||| || ||||||
Sbjct: 961 attgatatgcttctgttcaacgcgacggaggagctgaacaacatagtcgaacatgcaaag 902

                                                                       
Query: 439 cagcgccaccacatcattgggcaatatgtggtgggccacaaggggctggtgcaggacctg 498
           |||||||||||  | |||||||| |||||| | |||||  |||| |||||||| || |||
Sbjct: 901 cagcgccaccatgtgattgggcagtatgtgatcggccaagagggcctggtgcatgagctg 842

                                                          
Query: 499 g---aaaaggaccaagggagctccgagttcctgaagaaattctacac 542
           |     ||||| | ||||| ||| || ||||||||||||||||||||
Sbjct: 841 gggtcgaaggatctagggaactctgacttcctgaagaaattctacac 795



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 67.9 bits (34), Expect = 5e-08
 Identities = 113/138 (81%), Gaps = 1/138 (0%)
 Strand = Plus / Plus

                                                                            
Query: 400      gggatggaggagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattggg 459
                |||||||||||||||  |||||| ||| |||  | ||| |||||||| ||| |||| |||
Sbjct: 19696545 gggatggaggagctgggcaacatcaccaagcttgaaaaacagcgccatcacgtcatcggg 19696604

                                                                            
Query: 460      caatatgtggtgggcc-acaaggggctggtgcaggacctggaaaaggaccaagggagctc 518
                ||||||||||| |||| | || || |||||||| ||| |||| || ||| ||||||  ||
Sbjct: 19696605 caatatgtggtcggccaaaaatggactggtgcatgacatggagaaagacgaagggatgtc 19696664

                                  
Query: 519      cgagttcctgaagaaatt 536
                ||| ||||| ||||||||
Sbjct: 19696665 cgacttcctaaagaaatt 19696682



to top

>dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1166B08
          Length = 147667

 Score = 67.9 bits (34), Expect = 5e-08
 Identities = 113/138 (81%), Gaps = 1/138 (0%)
 Strand = Plus / Plus

                                                                         
Query: 400   gggatggaggagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattggg 459
             |||||||||||||||  |||||| ||| |||  | ||| |||||||| ||| |||| |||
Sbjct: 45167 gggatggaggagctgggcaacatcaccaagcttgaaaaacagcgccatcacgtcatcggg 45226

                                                                         
Query: 460   caatatgtggtgggcc-acaaggggctggtgcaggacctggaaaaggaccaagggagctc 518
             ||||||||||| |||| | || || |||||||| ||| |||| || ||| ||||||  ||
Sbjct: 45227 caatatgtggtcggccaaaaatggactggtgcatgacatggagaaagacgaagggatgtc 45286

                               
Query: 519   cgagttcctgaagaaatt 536
             ||| ||||| ||||||||
Sbjct: 45287 cgacttcctaaagaaatt 45304



to top

>ref|NM_112062.2| Arabidopsis thaliana catalytic/ oxidoreductase, acting on NADH or
           NADPH (AT3G12260) mRNA, complete cds
          Length = 773

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 430 cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473
           |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 333 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 376



to top

>ref|NM_202563.1| Arabidopsis thaliana TGA6; DNA binding / transcription factor (TGA6)
            mRNA, complete cds
          Length = 2063

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 430  cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473
            |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 2056 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 2013



to top

>gb|AY064675.1| Arabidopsis thaliana unknown protein (F28J15.12) mRNA, complete cds
          Length = 423

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 430 cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473
           |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 274 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 317



to top

>gb|AY054576.1| Arabidopsis thaliana unknown protein (F28J15.12) mRNA, complete cds
          Length = 612

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 430 cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473
           |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 335 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 378



to top

>gb|AC069472.1|AC069472 Arabidopsis thaliana chromosome 3 BAC F28J15 genomic sequence, complete
             sequence
          Length = 52211

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 430   cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473
             |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 34061 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 34018



to top

>dbj|AP002047.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC3
          Length = 86536

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 430   cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473
             |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 23051 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 23008



to top

>gb|DQ383772.1| Guillardia theta chloroplast photosystem II 33 kDa oxygen evolving
           protein PsbO (psbO) mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 996

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 182 cggtgaaggttccgccgaactcgg 205
           ||||||||||||||||||||||||
Sbjct: 610 cggtgaaggttccgccgaactcgg 587



to top

>emb|AJ821800.1| Guillardia theta partial mRNA for oxygen-evolving enhancer (oee
           gene)
          Length = 792

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 182 cggtgaaggttccgccgaactcgg 205
           ||||||||||||||||||||||||
Sbjct: 457 cggtgaaggttccgccgaactcgg 434



to top

>ref|XM_001182382.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC758755 (LOC758755), mRNA
          Length = 5352

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 336  ccagcagatcaggaagaaccagg 358
            |||||||||||||||||||||||
Sbjct: 4779 ccagcagatcaggaagaaccagg 4801



to top

>ref|XM_001200118.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
            LOC763964 (LOC763964), mRNA
          Length = 5352

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 336  ccagcagatcaggaagaaccagg 358
            |||||||||||||||||||||||
Sbjct: 4779 ccagcagatcaggaagaaccagg 4801



to top

>gb|DQ244943.1| Zea mays clone 11864 mRNA sequence
          Length = 658

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 430 cacgcaaagcagcgccaccacatcat 455
           |||||||||||||| |||||||||||
Sbjct: 342 cacgcaaagcagcgtcaccacatcat 367



to top

>ref|XM_994816.1| PREDICTED: Mus musculus splicing factor proline/glutamine rich
            (polypyrimidine tract binding protein associated),
            transcript variant 3 (Sfpq), mRNA
          Length = 4225

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 201  ctcggcgtcgatgggggaggcg 222
            ||||||||||||||||||||||
Sbjct: 1348 ctcggcgtcgatgggggaggcg 1327



to top

>ref|XM_981759.1| PREDICTED: Mus musculus splicing factor proline/glutamine rich
            (polypyrimidine tract binding protein associated) (Sfpq),
            mRNA
          Length = 4075

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 201  ctcggcgtcgatgggggaggcg 222
            ||||||||||||||||||||||
Sbjct: 1198 ctcggcgtcgatgggggaggcg 1177



to top

>ref|NM_023603.2| Mus musculus splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) (Sfpq), mRNA
 gb|BC089305.1| Mus musculus splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated), mRNA (cDNA clone
           MGC:101933 IMAGE:30360144), complete cds
          Length = 3032

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 201 ctcggcgtcgatgggggaggcg 222
           ||||||||||||||||||||||
Sbjct: 576 ctcggcgtcgatgggggaggcg 555



to top

>gb|AY034062.1| Mus musculus PTB-associated splicing factor mRNA, complete cds
          Length = 2464

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 201 ctcggcgtcgatgggggaggcg 222
           ||||||||||||||||||||||
Sbjct: 525 ctcggcgtcgatgggggaggcg 504



to top

>gb|BC080848.1| Mus musculus cDNA clone IMAGE:6813811, containing frame-shift
           errors
          Length = 3027

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 201 ctcggcgtcgatgggggaggcg 222
           ||||||||||||||||||||||
Sbjct: 576 ctcggcgtcgatgggggaggcg 555



to top

>emb|AL606985.26| Mouse DNA sequence from clone RP23-153M14 on chromosome 4, complete
             sequence
          Length = 193947

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 201   ctcggcgtcgatgggggaggcg 222
             ||||||||||||||||||||||
Sbjct: 75147 ctcggcgtcgatgggggaggcg 75126



to top

>gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome
          Length = 4133097

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 194     cgccgaactcggcgtcgatgg 214
               |||||||||||||||||||||
Sbjct: 3631005 cgccgaactcggcgtcgatgg 3631025


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 100,937,355
Number of extensions: 5433469
Number of successful extensions: 99958
Number of sequences better than 10.0: 29
Number of HSP's gapped: 99957
Number of HSP's successfully gapped: 34
Length of query: 700
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 678
Effective length of database: 18,508,616,841
Effective search space: 12548842218198
Effective search space used: 12548842218198
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top