Clone Name | FLbaf9f12 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_001066955.1| Oryza sativa (japonica cultivar-group) Os07g0640100 (Os07g0640100) mRNA, complete cds Length = 820 Score = 438 bits (221), Expect = e-119 Identities = 344/385 (89%) Strand = Plus / Plus Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228 ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| Sbjct: 134 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 193 Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 194 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 253 Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348 ||||||||||||||||| ||||| ||||||||||| ||| |||| || || ||||| | Sbjct: 254 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 313 Query: 349 aagaaccagggcgtctccgaccccaaggtcattgatatgcttctcttcaacgggatggag 408 ||||||||||||||| | |||||||||||||||||||||| || || || ||||||||| Sbjct: 314 aagaaccagggcgtcactaaccccaaggtcattgatatgctcctgtttaaggggatggag 373 Query: 409 gagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattgggcaatatgtg 468 |||||| |||||| ||||| ||||| ||||||||||| ||| |||| |||||||||||| Sbjct: 374 gagctgggcaacatcaccgaacacgcgaagcagcgccatcacgtcatcgggcaatatgtg 433 Query: 469 gtgggccacaaggggctggtgcaggacctggaaaaggaccaagggagctccgagttcctg 528 || ||||| ||||| ||||||||||| |||| || ||||||||| ||| || |||||| Sbjct: 434 gtcggccaaaagggactggtgcaggatatggagaaagaccaagggtcctcagacttcctg 493 Query: 529 aagaaattctacaccagcaattact 553 |||||||||||||| |||||||||| Sbjct: 494 aagaaattctacactagcaattact 518
>dbj|AK070897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073H14, full insert sequence Length = 823 Score = 438 bits (221), Expect = e-119 Identities = 344/385 (89%) Strand = Plus / Plus Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228 ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| Sbjct: 137 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 196 Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 197 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 256 Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348 ||||||||||||||||| ||||| ||||||||||| ||| |||| || || ||||| | Sbjct: 257 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 316 Query: 349 aagaaccagggcgtctccgaccccaaggtcattgatatgcttctcttcaacgggatggag 408 ||||||||||||||| | |||||||||||||||||||||| || || || ||||||||| Sbjct: 317 aagaaccagggcgtcactaaccccaaggtcattgatatgctcctgtttaaggggatggag 376 Query: 409 gagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattgggcaatatgtg 468 |||||| |||||| ||||| ||||| ||||||||||| ||| |||| |||||||||||| Sbjct: 377 gagctgggcaacatcaccgaacacgcgaagcagcgccatcacgtcatcgggcaatatgtg 436 Query: 469 gtgggccacaaggggctggtgcaggacctggaaaaggaccaagggagctccgagttcctg 528 || ||||| ||||| ||||||||||| |||| || ||||||||| ||| || |||||| Sbjct: 437 gtcggccaaaagggactggtgcaggatatggagaaagaccaagggtcctcagacttcctg 496 Query: 529 aagaaattctacaccagcaattact 553 |||||||||||||| |||||||||| Sbjct: 497 aagaaattctacactagcaattact 521
>dbj|AK059275.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C03, full insert sequence Length = 800 Score = 438 bits (221), Expect = e-119 Identities = 344/385 (89%) Strand = Plus / Plus Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228 ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| Sbjct: 155 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 214 Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 215 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 274 Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348 ||||||||||||||||| ||||| ||||||||||| ||| |||| || || ||||| | Sbjct: 275 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 334 Query: 349 aagaaccagggcgtctccgaccccaaggtcattgatatgcttctcttcaacgggatggag 408 ||||||||||||||| | |||||||||||||||||||||| || || || ||||||||| Sbjct: 335 aagaaccagggcgtcactaaccccaaggtcattgatatgctcctgtttaaggggatggag 394 Query: 409 gagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattgggcaatatgtg 468 |||||| |||||| ||||| ||||| ||||||||||| ||| |||| |||||||||||| Sbjct: 395 gagctgggcaacatcaccgaacacgcgaagcagcgccatcacgtcatcgggcaatatgtg 454 Query: 469 gtgggccacaaggggctggtgcaggacctggaaaaggaccaagggagctccgagttcctg 528 || ||||| ||||| ||||||||||| |||| || ||||||||| ||| || |||||| Sbjct: 455 gtcggccaaaagggactggtgcaggatatggagaaagaccaagggtcctcagacttcctg 514 Query: 529 aagaaattctacaccagcaattact 553 |||||||||||||| |||||||||| Sbjct: 515 aagaaattctacactagcaattact 539
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 281 bits (142), Expect = 2e-72 Identities = 193/210 (91%) Strand = Plus / Plus Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228 ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| Sbjct: 26584123 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 26584182 Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 26584183 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 26584242 Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348 ||||||||||||||||| ||||| ||||||||||| ||| |||| || || ||||| | Sbjct: 26584243 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 26584302 Query: 349 aagaaccagggcgtctccgaccccaaggtc 378 ||||||||||||||| | ||||||||||| Sbjct: 26584303 aagaaccagggcgtcactaaccccaaggtc 26584332 Score = 167 bits (84), Expect = 7e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 374 aggtcattgatatgcttctcttcaacgggatggaggagctgaacaacattaccgagcacg 433 |||||||||||||||| || || || ||||||||||||||| |||||| ||||| |||| Sbjct: 26585797 aggtcattgatatgctcctgtttaaggggatggaggagctgggcaacatcaccgaacacg 26585856 Query: 434 caaagcagcgccaccacatcattgggcaatatgtggtgggccacaaggggctggtgcagg 493 | ||||||||||| ||| |||| |||||||||||||| ||||| ||||| |||||||||| Sbjct: 26585857 cgaagcagcgccatcacgtcatcgggcaatatgtggtcggccaaaagggactggtgcagg 26585916 Query: 494 acctggaaaaggaccaagggagctccgagttcctgaagaaattctacaccagcaattact 553 | |||| || ||||||||| ||| || |||||||||||||||||||| |||||||||| Sbjct: 26585917 atatggagaaagaccaagggtcctcagacttcctgaagaaattctacactagcaattact 26585976
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 281 bits (142), Expect = 2e-72 Identities = 193/210 (91%) Strand = Plus / Plus Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228 ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| Sbjct: 129394 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 129453 Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 129454 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 129513 Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348 ||||||||||||||||| ||||| ||||||||||| ||| |||| || || ||||| | Sbjct: 129514 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 129573 Query: 349 aagaaccagggcgtctccgaccccaaggtc 378 ||||||||||||||| | ||||||||||| Sbjct: 129574 aagaaccagggcgtcactaaccccaaggtc 129603 Score = 167 bits (84), Expect = 7e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 374 aggtcattgatatgcttctcttcaacgggatggaggagctgaacaacattaccgagcacg 433 |||||||||||||||| || || || ||||||||||||||| |||||| ||||| |||| Sbjct: 131068 aggtcattgatatgctcctgtttaaggggatggaggagctgggcaacatcaccgaacacg 131127 Query: 434 caaagcagcgccaccacatcattgggcaatatgtggtgggccacaaggggctggtgcagg 493 | ||||||||||| ||| |||| |||||||||||||| ||||| ||||| |||||||||| Sbjct: 131128 cgaagcagcgccatcacgtcatcgggcaatatgtggtcggccaaaagggactggtgcagg 131187 Query: 494 acctggaaaaggaccaagggagctccgagttcctgaagaaattctacaccagcaattact 553 | |||| || ||||||||| ||| || |||||||||||||||||||| |||||||||| Sbjct: 131188 atatggagaaagaccaagggtcctcagacttcctgaagaaattctacactagcaattact 131247
>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524G08 Length = 146690 Score = 281 bits (142), Expect = 2e-72 Identities = 193/210 (91%) Strand = Plus / Plus Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228 ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| Sbjct: 1727 ttcacgatgcgcgcggtgaaggtgccgccgaactcggcgtcgctggaggaggcgcggcac 1786 Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1787 cgcgtgttcgacttcttcaggcaggcgtgccgcgccatcccctccatcatggagatctac 1846 Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348 ||||||||||||||||| ||||| ||||||||||| ||| |||| || || ||||| | Sbjct: 1847 aacctcgacgacgtcgtcaccccgtcccagctccgctccaccatcgccaaggagatccgc 1906 Query: 349 aagaaccagggcgtctccgaccccaaggtc 378 ||||||||||||||| | ||||||||||| Sbjct: 1907 aagaaccagggcgtcactaaccccaaggtc 1936 Score = 167 bits (84), Expect = 7e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 374 aggtcattgatatgcttctcttcaacgggatggaggagctgaacaacattaccgagcacg 433 |||||||||||||||| || || || ||||||||||||||| |||||| ||||| |||| Sbjct: 3401 aggtcattgatatgctcctgtttaaggggatggaggagctgggcaacatcaccgaacacg 3460 Query: 434 caaagcagcgccaccacatcattgggcaatatgtggtgggccacaaggggctggtgcagg 493 | ||||||||||| ||| |||| |||||||||||||| ||||| ||||| |||||||||| Sbjct: 3461 cgaagcagcgccatcacgtcatcgggcaatatgtggtcggccaaaagggactggtgcagg 3520 Query: 494 acctggaaaaggaccaagggagctccgagttcctgaagaaattctacaccagcaattact 553 | |||| || ||||||||| ||| || |||||||||||||||||||| |||||||||| Sbjct: 3521 atatggagaaagaccaagggtcctcagacttcctgaagaaattctacactagcaattact 3580
>gb|AY107920.1| Zea mays PCO093798 mRNA sequence Length = 940 Score = 226 bits (114), Expect = 8e-56 Identities = 320/388 (82%), Gaps = 3/388 (0%) Strand = Plus / Plus Query: 169 ttcacgatgcgcgcggtgaaggttccgccgaactcggcgtcgatgggggaggcgcggcac 228 ||||||||||| || |||||||| || ||||||||||| ||| ||| |||||| |||||| Sbjct: 166 ttcacgatgcgggcagtgaaggtgcctccgaactcggcctcgctggaggaggcccggcac 225 Query: 229 cgcgtgttcgacttcttcaggcaggcctgccgcgccatcccctccatcatggagatctac 288 ||||| ||||| ||||||| |||||| |||||| | |||||| || |||||||||||||| Sbjct: 226 cgcgtcttcgatttcttcaagcaggcatgccgctctatccccaccgtcatggagatctac 285 Query: 289 aacctcgacgacgtcgtgacccccgcccagctccgcgccagcatctcccagcagatcagg 348 |||||||||||||| || || ||| | ||||||||| | | |||| | || ||||| | Sbjct: 286 aacctcgacgacgttgtcacgccctctcagctccgctcgaccatcgctaaggagatccgt 345 Query: 349 aagaaccagggcgtctccgaccccaaggtcattgatatgcttctcttcaacgggatggag 408 || |||||| |||| || |||||||||| |||||||||||||| ||||||| || |||| Sbjct: 346 aaaaaccagaacgtcaccaaccccaaggtgattgatatgcttctgttcaacgcgacggag 405 Query: 409 gagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattgggcaatatgtg 468 |||||||||||||| ||| || |||||||||||||| || | |||||||| |||||| Sbjct: 406 gagctgaacaacatagtcgaacatgcaaagcagcgccatcatgtgattgggcagtatgtg 465 Query: 469 gtgggccacaaggggctggtgcaggacctgg---aaaaggaccaagggagctccgagttc 525 | ||||| |||| |||||||| || |||| ||||| | ||||| ||| || || Sbjct: 466 atcggccaagagggcctggtgcacgagctggggtcgaaggatctagggaactctgacttt 525 Query: 526 ctgaagaaattctacaccagcaattact 553 ||||||||||||||||| |||||||||| Sbjct: 526 ctgaagaaattctacacaagcaattact 553
>emb|CT834490.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN090G20, full insert sequence Length = 591 Score = 165 bits (83), Expect = 3e-37 Identities = 155/179 (86%) Strand = Plus / Plus Query: 375 ggtcattgatatgcttctcttcaacgggatggaggagctgaacaacattaccgagcacgc 434 ||||||||||||||| || || || ||||||||||||||| |||||| ||||| ||||| Sbjct: 140 ggtcattgatatgctcctgtttaaggggatggaggagctgggcaacatcaccgaacacgc 199 Query: 435 aaagcagcgccaccacatcattgggcaatatgtggtgggccacaaggggctggtgcagga 494 ||||||||||| ||| |||| |||||||||||||| ||||| ||||| ||||||||||| Sbjct: 200 gaagcagcgccatcacgtcatcgggcaatatgtggtcggccaaaagggactggtgcagga 259 Query: 495 cctggaaaaggaccaagggagctccgagttcctgaagaaattctacaccagcaattact 553 |||| || ||||||||| ||| || |||||||||||||||||||| |||||||||| Sbjct: 260 tatggagaaagaccaagggtcctcagacttcctgaagaaattctacactagcaattact 318
>gb|AY618478.1| Zea mays isolate mon03077 Ac insertion site Length = 1147 Score = 97.6 bits (49), Expect = 5e-17 Identities = 138/167 (82%), Gaps = 3/167 (1%) Strand = Plus / Minus Query: 379 attgatatgcttctcttcaacgggatggaggagctgaacaacattaccgagcacgcaaag 438 |||||||||||||| ||||||| || |||||||||||||||||| ||| || |||||| Sbjct: 961 attgatatgcttctgttcaacgcgacggaggagctgaacaacatagtcgaacatgcaaag 902 Query: 439 cagcgccaccacatcattgggcaatatgtggtgggccacaaggggctggtgcaggacctg 498 ||||||||||| | |||||||| |||||| | ||||| |||| |||||||| || ||| Sbjct: 901 cagcgccaccatgtgattgggcagtatgtgatcggccaagagggcctggtgcatgagctg 842 Query: 499 g---aaaaggaccaagggagctccgagttcctgaagaaattctacac 542 | ||||| | ||||| ||| || |||||||||||||||||||| Sbjct: 841 gggtcgaaggatctagggaactctgacttcctgaagaaattctacac 795
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 67.9 bits (34), Expect = 5e-08 Identities = 113/138 (81%), Gaps = 1/138 (0%) Strand = Plus / Plus Query: 400 gggatggaggagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattggg 459 ||||||||||||||| |||||| ||| ||| | ||| |||||||| ||| |||| ||| Sbjct: 19696545 gggatggaggagctgggcaacatcaccaagcttgaaaaacagcgccatcacgtcatcggg 19696604 Query: 460 caatatgtggtgggcc-acaaggggctggtgcaggacctggaaaaggaccaagggagctc 518 ||||||||||| |||| | || || |||||||| ||| |||| || ||| |||||| || Sbjct: 19696605 caatatgtggtcggccaaaaatggactggtgcatgacatggagaaagacgaagggatgtc 19696664 Query: 519 cgagttcctgaagaaatt 536 ||| ||||| |||||||| Sbjct: 19696665 cgacttcctaaagaaatt 19696682
>dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1166B08 Length = 147667 Score = 67.9 bits (34), Expect = 5e-08 Identities = 113/138 (81%), Gaps = 1/138 (0%) Strand = Plus / Plus Query: 400 gggatggaggagctgaacaacattaccgagcacgcaaagcagcgccaccacatcattggg 459 ||||||||||||||| |||||| ||| ||| | ||| |||||||| ||| |||| ||| Sbjct: 45167 gggatggaggagctgggcaacatcaccaagcttgaaaaacagcgccatcacgtcatcggg 45226 Query: 460 caatatgtggtgggcc-acaaggggctggtgcaggacctggaaaaggaccaagggagctc 518 ||||||||||| |||| | || || |||||||| ||| |||| || ||| |||||| || Sbjct: 45227 caatatgtggtcggccaaaaatggactggtgcatgacatggagaaagacgaagggatgtc 45286 Query: 519 cgagttcctgaagaaatt 536 ||| ||||| |||||||| Sbjct: 45287 cgacttcctaaagaaatt 45304
>ref|NM_112062.2| Arabidopsis thaliana catalytic/ oxidoreductase, acting on NADH or NADPH (AT3G12260) mRNA, complete cds Length = 773 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 430 cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473 |||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 333 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 376
>ref|NM_202563.1| Arabidopsis thaliana TGA6; DNA binding / transcription factor (TGA6) mRNA, complete cds Length = 2063 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 430 cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473 |||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 2056 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 2013
>gb|AY064675.1| Arabidopsis thaliana unknown protein (F28J15.12) mRNA, complete cds Length = 423 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 430 cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473 |||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 274 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 317
>gb|AY054576.1| Arabidopsis thaliana unknown protein (F28J15.12) mRNA, complete cds Length = 612 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 430 cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473 |||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 335 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 378
>gb|AC069472.1|AC069472 Arabidopsis thaliana chromosome 3 BAC F28J15 genomic sequence, complete sequence Length = 52211 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 430 cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473 |||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 34061 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 34018
>dbj|AP002047.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC3 Length = 86536 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 430 cacgcaaagcagcgccaccacatcattgggcaatatgtggtggg 473 |||||||||||||| ||||||||||| || |||||||||||||| Sbjct: 23051 cacgcaaagcagcgtcaccacatcatcggtcaatatgtggtggg 23008
>gb|DQ383772.1| Guillardia theta chloroplast photosystem II 33 kDa oxygen evolving protein PsbO (psbO) mRNA, partial cds; nuclear gene for chloroplast product Length = 996 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Minus Query: 182 cggtgaaggttccgccgaactcgg 205 |||||||||||||||||||||||| Sbjct: 610 cggtgaaggttccgccgaactcgg 587
>emb|AJ821800.1| Guillardia theta partial mRNA for oxygen-evolving enhancer (oee gene) Length = 792 Score = 48.1 bits (24), Expect = 0.042 Identities = 24/24 (100%) Strand = Plus / Minus Query: 182 cggtgaaggttccgccgaactcgg 205 |||||||||||||||||||||||| Sbjct: 457 cggtgaaggttccgccgaactcgg 434
>ref|XM_001182382.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC758755 (LOC758755), mRNA Length = 5352 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 336 ccagcagatcaggaagaaccagg 358 ||||||||||||||||||||||| Sbjct: 4779 ccagcagatcaggaagaaccagg 4801
>ref|XM_001200118.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC763964 (LOC763964), mRNA Length = 5352 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 336 ccagcagatcaggaagaaccagg 358 ||||||||||||||||||||||| Sbjct: 4779 ccagcagatcaggaagaaccagg 4801
>gb|DQ244943.1| Zea mays clone 11864 mRNA sequence Length = 658 Score = 44.1 bits (22), Expect = 0.66 Identities = 25/26 (96%) Strand = Plus / Plus Query: 430 cacgcaaagcagcgccaccacatcat 455 |||||||||||||| ||||||||||| Sbjct: 342 cacgcaaagcagcgtcaccacatcat 367
>ref|XM_994816.1| PREDICTED: Mus musculus splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated), transcript variant 3 (Sfpq), mRNA Length = 4225 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 201 ctcggcgtcgatgggggaggcg 222 |||||||||||||||||||||| Sbjct: 1348 ctcggcgtcgatgggggaggcg 1327
>ref|XM_981759.1| PREDICTED: Mus musculus splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) (Sfpq), mRNA Length = 4075 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 201 ctcggcgtcgatgggggaggcg 222 |||||||||||||||||||||| Sbjct: 1198 ctcggcgtcgatgggggaggcg 1177
>ref|NM_023603.2| Mus musculus splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) (Sfpq), mRNA gb|BC089305.1| Mus musculus splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated), mRNA (cDNA clone MGC:101933 IMAGE:30360144), complete cds Length = 3032 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 201 ctcggcgtcgatgggggaggcg 222 |||||||||||||||||||||| Sbjct: 576 ctcggcgtcgatgggggaggcg 555
>gb|AY034062.1| Mus musculus PTB-associated splicing factor mRNA, complete cds Length = 2464 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 201 ctcggcgtcgatgggggaggcg 222 |||||||||||||||||||||| Sbjct: 525 ctcggcgtcgatgggggaggcg 504
>gb|BC080848.1| Mus musculus cDNA clone IMAGE:6813811, containing frame-shift errors Length = 3027 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 201 ctcggcgtcgatgggggaggcg 222 |||||||||||||||||||||| Sbjct: 576 ctcggcgtcgatgggggaggcg 555
>emb|AL606985.26| Mouse DNA sequence from clone RP23-153M14 on chromosome 4, complete sequence Length = 193947 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 201 ctcggcgtcgatgggggaggcg 222 |||||||||||||||||||||| Sbjct: 75147 ctcggcgtcgatgggggaggcg 75126
>gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome Length = 4133097 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 cgccgaactcggcgtcgatgg 214 ||||||||||||||||||||| Sbjct: 3631005 cgccgaactcggcgtcgatgg 3631025 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 100,937,355 Number of extensions: 5433469 Number of successful extensions: 99958 Number of sequences better than 10.0: 29 Number of HSP's gapped: 99957 Number of HSP's successfully gapped: 34 Length of query: 700 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 678 Effective length of database: 18,508,616,841 Effective search space: 12548842218198 Effective search space used: 12548842218198 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)