ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 28 5.6
2NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 28 5.6
3CB024_HUMAN (Q9BV87) Protein C2orf24 28 7.4
4ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disinteg... 28 7.4
5PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosp... 28 7.4
6APEA_THENE (O86957) Probable M18-family aminopeptidase 1 (EC 3.4... 27 9.6
7RW1_DROME (Q9V7H4) RW1 protein homolog 27 9.6
8KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4 27 9.6
9KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-) 27 9.6

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -1

Query: 243 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 106
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758



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>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -1

Query: 243 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 106
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756



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>CB024_HUMAN (Q9BV87) Protein C2orf24|
          Length = 410

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -1

Query: 327 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 163
           ++++ S  V  + L L C P    P+L     C  E C     +C+ +  N  +C  G +
Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303

Query: 162 GMRKL 148
           G+R L
Sbjct: 304 GLRSL 308



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>ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 33)
          Length = 797

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = -1

Query: 153 KLSSAGYRSMHRRVQKKSLVLPNNEVDGVMFPPALRCFSSSWQT-------SGIVVI 4
           KL + GY   H R     +VL  N  D   +   +R F  SW         SG++V+
Sbjct: 87  KLLAPGYTETHYRPDGHPVVLSPNHTDHCQYHGRVRGFRESWVVLSTCSGMSGLIVL 143



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>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1290

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 54  PEGTSHHRLHYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYC 194
           PE  ++   HYW    I S+H+  LTG Q S  S+  +   C    C
Sbjct: 319 PETMNNPLSHYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361



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>APEA_THENE (O86957) Probable M18-family aminopeptidase 1 (EC 3.4.11.-)|
          Length = 452

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 39  KNNGGPEGTSHHRLHYWAKQGIFS 110
           K  GGPE  + H + YW K  + S
Sbjct: 303 KIQGGPEIQNSHSMRYWKKSAVIS 326



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>RW1_DROME (Q9V7H4) RW1 protein homolog|
          Length = 1567

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 147  SSAGYRSMHRRV-QKKSLVLPNNEVDGVMFPPALRCFSSSWQTSGIV 10
            +  G+R   R+  QK +     N       P AL+C S+ W+TS  V
Sbjct: 1305 AGVGFRKPERKQRQKLNFGQTTNSTSPPESPDALKCISNPWETSSRV 1351



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>KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4|
          Length = 520

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 39  KNNGGPEGTSHHRLHYWAKQ 98
           K+ GGP G S HR+  W +Q
Sbjct: 169 KSTGGPSGRSGHRMVAWKRQ 188



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>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 194

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 148 ELPHADQTRRARTLIALIIHAPAQLSV 228
           ELP  D TR +RTL  L+ HAP  + +
Sbjct: 7   ELPAPDATRISRTLSYLLRHAPQTIGL 33


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,819,754
Number of Sequences: 219361
Number of extensions: 1009544
Number of successful extensions: 2380
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2378
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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