ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 270 3e-69
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 60 5e-06
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.005
4emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 50 0.005
5gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 50 0.005
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
7dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
8gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.073
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.073
10ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.29
11ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.29
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
13dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.29
14dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
15dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
16gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partia... 44 0.29
17ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
18emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 1.1
19emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 1.1
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
21dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
22gb|AC022448.7| Homo sapiens chromosome 5 clone RP11-78G3, comple... 42 1.1
23dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
24dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
25dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
26dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
27gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA,... 42 1.1
28gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA,... 42 1.1
29dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2... 42 1.1
30ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.5
31gb|AF287229.1| Tetrahymena pyriformis heat shock protein 90 (HSP... 40 4.5
32gb|AY110522.1| Zea mays CL4677_2 mRNA sequence 40 4.5
33gb|AY104322.1| Zea mays PCO093659 mRNA sequence 40 4.5
34gb|AF151114.1|AF151114 Tetrahymena thermophila strain B2086 hsp8... 40 4.5

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  270 bits (136), Expect = 3e-69
 Identities = 149/153 (97%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                        
Query: 79   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 139  agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 194
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                             
Query: 195  cttaattattcatgcaccggcacaactctctgt 227
            |||||||||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744



 Score =  180 bits (91), Expect = 2e-42
 Identities = 97/99 (97%)
 Strand = Plus / Minus

                                                                        
Query: 244  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 303
            ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                   
Query: 304  gtgctcagatcagatggatatgctgttcgggatgcccct 342
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccct 2629



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 72   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 121
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 154  ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 198
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 313 tcagatggatatgctgttcgggatgcccct 342
           ||||||||| |||||||| |||||||||||
Sbjct: 906 tcagatggagatgctgttggggatgcccct 877



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 310      agatcagatggatatgctgttcgggatgcccct 342
                |||||||||||| |||||||| |||||||||||
Sbjct: 30026452 agatcagatggagatgctgttggggatgcccct 30026420



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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 310  agatcagatggatatgctgttcgggatgcccct 342
            |||||||||||| |||||||| |||||||||||
Sbjct: 2698 agatcagatggagatgctgttggggatgcccct 2666



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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 310   agatcagatggatatgctgttcgggatgcccct 342
             |||||||||||| |||||||| |||||||||||
Sbjct: 81299 agatcagatggagatgctgttggggatgcccct 81331



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 310      agatcagatggatatgctgttcgggatgcccct 342
                |||||||||||| |||||||| |||||||||||
Sbjct: 30117874 agatcagatggagatgctgttggggatgcccct 30117842



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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 310  agatcagatggatatgctgttcgggatgcccct 342
            |||||||||||| |||||||| |||||||||||
Sbjct: 2731 agatcagatggagatgctgttggggatgcccct 2699



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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 186    ccttattgccttaattattcatg 208
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 186   ccttattgccttaattattcatg 208
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 186      ccttattgccttaattattcatg 208
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 186      ccttattgccttaattattcatg 208
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060



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>ref|XM_464447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3123

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 313  tcagatggatatgctgttcgggatgcccct 342
            ||||||||| |||||||| |||||||||||
Sbjct: 2881 tcagatggagatgctgtttgggatgcccct 2852



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>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 313  tcagatggatatgctgttcgggatgcccct 342
            ||||||||| |||||||| |||||||||||
Sbjct: 2613 tcagatggagatgctgttggggatgcccct 2584



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 313     tcagatggatatgctgttcgggatgcccct 342
               ||||||||| |||||||| |||||||||||
Sbjct: 5276963 tcagatggagatgctgtttgggatgcccct 5276992



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>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1225_F07
          Length = 142772

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 313  tcagatggatatgctgttcgggatgcccct 342
            ||||||||| |||||||| |||||||||||
Sbjct: 3266 tcagatggagatgctgtttgggatgcccct 3295



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>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full
            insert sequence
          Length = 3160

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 313  tcagatggatatgctgttcgggatgcccct 342
            ||||||||| |||||||| |||||||||||
Sbjct: 2880 tcagatggagatgctgtttgggatgcccct 2851



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>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full
            insert sequence
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 313  tcagatggatatgctgttcgggatgcccct 342
            ||||||||| |||||||| |||||||||||
Sbjct: 2042 tcagatggagatgctgtttgggatgcccct 2013



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>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds
          Length = 1814

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 311  gatcagatggatatgctgttcgggatgccc 340
            ||||||||||| |||||||| |||||||||
Sbjct: 1558 gatcagatggagatgctgttggggatgccc 1529



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>ref|XM_483279.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3198

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 312  atcagatggatatgctgttcgggatgccc 340
            ||||||||||| ||||||| |||||||||
Sbjct: 2978 atcagatggatgtgctgttggggatgccc 2950



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    aaacaagggattttttctgca 113
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 90    gcaaaacaagggattttttct 110
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 312      atcagatggatatgctgttcgggatgccc 340
                ||||||||||| ||||||| |||||||||
Sbjct: 25242576 atcagatggatgtgctgttggggatgccc 25242548



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 312      atcagatggatatgctgttcgggatgccc 340
                ||||||||||| ||||||| |||||||||
Sbjct: 25209453 atcagatggatgtgctgttggggatgccc 25209481



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 25       ttgccaagaagaagaaaaaca 45
                |||||||||||||||||||||
Sbjct: 35171480 ttgccaagaagaagaaaaaca 35171500



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>gb|AC022448.7| Homo sapiens chromosome 5 clone RP11-78G3, complete sequence
          Length = 111000

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    gtttgccaagaagaagaaaaa 43
             |||||||||||||||||||||
Sbjct: 26186 gtttgccaagaagaagaaaaa 26206



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>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031D02
          Length = 183692

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    ttgccaagaagaagaaaaaca 45
             |||||||||||||||||||||
Sbjct: 50564 ttgccaagaagaagaaaaaca 50584



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>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1168A08
          Length = 138135

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 312    atcagatggatatgctgttcgggatgccc 340
              ||||||||||| ||||||| |||||||||
Sbjct: 107699 atcagatggatgtgctgttggggatgccc 107671



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 312   atcagatggatatgctgttcgggatgccc 340
             ||||||||||| ||||||| |||||||||
Sbjct: 74576 atcagatggatgtgctgttggggatgccc 74604



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>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016N23
          Length = 147336

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 312   atcagatggatatgctgttcgggatgccc 340
             ||||||||||| ||||||| |||||||||
Sbjct: 17761 atcagatggatgtgctgttggggatgccc 17733



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>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full
            insert sequence
          Length = 3196

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 312  atcagatggatatgctgttcgggatgccc 340
            ||||||||||| ||||||| |||||||||
Sbjct: 2976 atcagatggatgtgctgttggggatgccc 2948



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>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds
          Length = 2232

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 312  atcagatggatatgctgttcgggatgccc 340
            ||||||||||| ||||||| |||||||||
Sbjct: 2053 atcagatggatgtgctgttggggatgccc 2025



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>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds
          Length = 2664

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 312  atcagatggatatgctgttcgggatgccc 340
            ||||||||||| ||||||| |||||||||
Sbjct: 2461 atcagatggatgtgctgttggggatgccc 2433



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>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for
            lipoxygenase, complete cds
          Length = 3007

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 312  atcagatggatatgctgttcgggatgccc 340
            ||||||||||| ||||||| |||||||||
Sbjct: 2891 atcagatggatgtgctgttggggatgccc 2863



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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   ggagggaacatcacaccatc 75
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438



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>gb|AF287229.1| Tetrahymena pyriformis heat shock protein 90 (HSP81) gene, partial
           cds
          Length = 2283

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 28  ccaagaagaagaaaaacaac 47
           ||||||||||||||||||||
Sbjct: 979 ccaagaagaagaaaaacaac 998



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>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence
          Length = 1304

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 311 gatcagatggatatgctgttcgggatgcccct 342
           ||||||||||| |||||| | |||||||||||
Sbjct: 132 gatcagatggagatgctgctggggatgcccct 163



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>gb|AY104322.1| Zea mays PCO093659 mRNA sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 311  gatcagatggatatgctgttcgggatgcccct 342
            ||||||||||| |||||| | |||||||||||
Sbjct: 1216 gatcagatggagatgctgctggggatgcccct 1185



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>gb|AF151114.1|AF151114 Tetrahymena thermophila strain B2086 hsp82 heat shock protein
           (HSP82) mRNA, partial cds
          Length = 2243

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 28  ccaagaagaagaaaaacaac 47
           ||||||||||||||||||||
Sbjct: 974 ccaagaagaagaaaaacaac 993


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,477,015
Number of Sequences: 3902068
Number of extensions: 3477015
Number of successful extensions: 86029
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85828
Number of HSP's gapped (non-prelim): 200
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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