Clone Information

BLAST Search Result

Clone Name	rbastl56h08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|M95746.1\|WHTSTPCDN Wheat (clone p80k-16) initiation factor is...	301	8e-79
2	gb\|M95747.1\|WHTIF4F82B Wheat (clone p80k-34) initiation factor i...	295	5e-77
3	emb\|AL606594.4\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	100	6e-18
4	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	100	6e-18
5	dbj\|AK065553.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	6e-18
6	dbj\|AK060761.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	6e-18
7	emb\|AL442115.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	100	6e-18
8	emb\|AM156958.1\| Oryza sativa (indica cultivar-group) mRNA for pu...	92	1e-15
9	emb\|AM156957.1\| Oryza sativa (indica cultivar-group) mRNA for pu...	92	1e-15
10	emb\|AM156959.1\| Oryza glaberrima mRNA for putative eukaryotic tr...	84	3e-13
11	gb\|BT016928.1\| Zea mays clone E04912703C02.c mRNA sequence	54	3e-04
12	gb\|AY110434.1\| Zea mays CL533_2 mRNA sequence	50	0.005
13	gb\|AC151915.8\| Medicago truncatula clone mth2-30n12, complete se...	46	0.072
14	gb\|AC151743.27\| Medicago truncatula clone mth2-25e15, complete s...	46	0.072
15	emb\|Z69724.1\|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5...	44	0.28
16	emb\|CR388387.10\| Zebrafish DNA sequence from clone DKEY-260J18 i...	44	0.28
17	gb\|AY109824.1\| Zea mays CL533_1 mRNA sequence	44	0.28
18	gb\|AC182813.8\| Medicago truncatula clone mth2-69k1, complete seq...	42	1.1
19	gb\|AC174297.11\| Medicago truncatula clone mth2-73p24, complete s...	42	1.1
20	gb\|AC144540.7\| Medicago truncatula clone mth2-19p16, complete se...	42	1.1
21	gb\|AC146745.20\| Medicago truncatula clone mth2-53p19, complete s...	42	1.1
22	gb\|AC144657.6\| Medicago truncatula clone mth2-16a6, complete seq...	42	1.1
23	gb\|AC140722.11\| Medicago truncatula clone mth2-14e20, complete s...	42	1.1
24	emb\|BX927394.14\| Zebrafish DNA sequence from clone CH211-262I10 ...	42	1.1
25	emb\|CT033770.2\| Medicago truncatula chromosome 5 clone mth2-176e...	42	1.1
26	gb\|AC140845.2\| Mus musculus BAC clone RP24-386C13 from chromosom...	40	4.4
27	gb\|AC161931.6\| Mus musculus chromosome 3, clone RP23-290N20, com...	40	4.4
28	gb\|AC123554.3\| Mus musculus BAC clone RP23-135A9 from chromosome...	40	4.4
29	emb\|CR376778.9\| Zebrafish DNA sequence from clone DKEYP-94F12 in...	40	4.4
30	emb\|CR318599.18\| Zebrafish DNA sequence from clone DKEY-28D5 in ...	40	4.4
31	gb\|AC131080.13\| Mus musculus chromosome 16, clone RP23-438H16, c...	40	4.4
32	gb\|AC128952.4\| Rattus norvegicus 14 BAC CH230-510F9 (Children's ...	40	4.4
33	emb\|AL450312.10\| Human DNA sequence from clone RP11-138L24 on ch...	40	4.4
34	emb\|AL354692.23\| Human DNA sequence from clone RP11-361M4 on chr...	40	4.4
35	emb\|AL354701.7\| Human DNA sequence from clone RP11-785H23 on chr...	40	4.4
36	gb\|AC099101.7\| Rattus norvegicus 14 BAC CH230-186B23 (Children's...	40	4.4
37	emb\|AJ400899.1\|PSA400899 Pisum sativum partial kdsA gene for Kdo...	40	4.4
38	emb\|CR855858.5\| Zebrafish DNA sequence from clone CH211-113H5 in...	40	4.4
39	emb\|BX901883.5\| Zebrafish DNA sequence from clone DKEY-151M15 in...	40	4.4
40	emb\|BX004857.10\| Zebrafish DNA sequence from clone CH211-217I17,...	40	4.4
41	emb\|BX927134.11\| Zebrafish DNA sequence from clone CH211-261C20 ...	40	4.4
42	gb\|AC108104.2\| Homo sapiens chromosome 5 clone RP11-198P15, comp...	40	4.4
43	dbj\|AK135378.1\| Mus musculus 12 days embryo female mullerian duc...	40	4.4
44	gb\|AC008650.8\| Homo sapiens chromosome 5 clone CTB-186M2, comple...	40	4.4
45	gb\|AC084664.1\|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, c...	40	4.4
46	dbj\|AP006628.1\| Onion yellows phytoplasma OY-M DNA, complete genome	40	4.4
47	emb\|BX005055.5\| Zebrafish DNA sequence from clone CH211-188N23 i...	40	4.4
48	emb\|AL773512.6\| Mouse DNA sequence from clone RP23-454N6 on chro...	40	4.4
49	emb\|AL935194.4\| Zebrafish DNA sequence from clone CH211-237E12, ...	40	4.4
50	emb\|CR769777.13\| Zebrafish DNA sequence from clone DKEY-189D19 i...	40	4.4
51	emb\|BX248390.7\| Zebrafish DNA sequence from clone DKEY-34F16 in ...	40	4.4
52	emb\|CR751546.4\| Zebrafish DNA sequence from clone CH211-53M6 in ...	40	4.4
53	emb\|BX640497.11\| Zebrafish DNA sequence from clone CH211-108O9 i...	40	4.4
54	emb\|BX470128.8\| Zebrafish DNA sequence from clone DKEY-19F21 in ...	40	4.4
55	emb\|CT010479.25\| Mouse DNA sequence from clone RP23-233G23 on ch...	40	4.4
56	emb\|AL161752.4\|CNS01RHH Human chromosome 14 DNA sequence BAC R-9...	40	4.4
57	gb\|AC163101.9\| Mus musculus chromosome 18, clone RP24-177G6, com...	40	4.4
58	gb\|AC102618.19\| Mus musculus chromosome 18, clone RP23-426G16, c...	40	4.4
59	emb\|AL954703.8\| Zebrafish DNA sequence from clone CH211-51I10 in...	40	4.4
60	gb\|AC117544.8\| Mus musculus chromosome 8, clone RP23-99L5, compl...	40	4.4

>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
            sequence
          Length = 2863

 Score =  301 bits (152), Expect = 8e-79
 Identities = 158/160 (98%)
 Strand = Plus / Minus

                                                                        
Query: 10   aagccaaaataatcttaaattcagttttcgactcctacaatgctgacacgatatattgta 69
            |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 aagccaaaatgatcttagattcagttttcgactcctacaatgctgacacgatatattgta 2804

                                                                        
Query: 70   accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 2744

                                                    
Query: 130  aataataacattggaggagacacaaaaacatcccatttga 169
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aataataacattggaggagacacaaaaacatcccatttga 2704



 Score =  222 bits (112), Expect = 6e-55
 Identities = 141/148 (95%), Gaps = 2/148 (1%)
 Strand = Plus / Minus

                                                                        
Query: 189  gccttgttcattcccagactccagcaagagttaggccgccgtcgcc-gagagaccaaaat 247
            ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 2693 gccttgttcattcccaggctccagcaagagttaggccgccgtcgccagagagaccaaa-t 2635

                                                                        
Query: 248  ccatggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatat 307
            |||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 2634 ccatggcttctttctgtcctcgaaacaataatcaacactcatgtgacctcgcaaaaatat 2575

                                        
Query: 308  acagctcaaaactggctgttgctcacat 335
            ||||||||||||||||||||||||||||
Sbjct: 2574 acagctcaaaactggctgttgctcacat 2547

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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA,
            complete cds
          Length = 2887

 Score =  295 bits (149), Expect = 5e-77
 Identities = 152/153 (99%)
 Strand = Plus / Minus

                                                                        
Query: 15   aaaataatcttaaattcagttttcgactcctacaatgctgacacgatatattgtaaccga 74
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 2803

                                                                        
Query: 75   cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 2743

                                             
Query: 135  taacattggaggagacacaaaaacatcccattt 167
            |||||||||||||||||||||||||||||||||
Sbjct: 2742 taacattggaggagacacaaaaacatcccattt 2710



 Score =  260 bits (131), Expect = 3e-66
 Identities = 143/147 (97%)
 Strand = Plus / Minus

                                                                        
Query: 189  gccttgttcattcccagactccagcaagagttaggccgccgtcgccgagagaccaaaatc 248
            ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2696 gccttgttcattcccaggctccagcgagagttaggccgccgtcgccgagagaccaaaatc 2637

                                                                        
Query: 249  catggcttcttcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatata 308
            |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 2636 catggcttcttcctttcctcgaaacaataatcaacactcatgtgacctcgcaaaaatata 2577

                                       
Query: 309  cagctcaaaactggctgttgctcacat 335
            |||||||||||||||||||||||||||
Sbjct: 2576 cagctcaaaactggctgttgctcacat 2550

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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 53    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 111
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 42105 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 42164

                                       
Query: 112   gtgtaagaactgaaaagaaataataa 137
             ||||| | || |||||||| ||||||
Sbjct: 42165 gtgtacgcacagaaaagaactaataa 42190



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 87/101 (86%), Gaps = 7/101 (6%)
 Strand = Plus / Plus

                                                                         
Query: 242   caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 294
             |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 42261 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 42320

                                                      
Query: 295   ctcgcaaaaatatacagctcaaaactggctgttgctcacat 335
             || ||||||||||||||| ||||||||||||||||||||||
Sbjct: 42321 cttgcaaaaatatacagcacaaaactggctgttgctcacat 42361

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                            
Query: 53       tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 111
                |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 24921520 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 24921579

                                          
Query: 112      gtgtaagaactgaaaagaaataataa 137
                ||||| | || |||||||| ||||||
Sbjct: 24921580 gtgtacgcacagaaaagaactaataa 24921605



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 87/101 (86%), Gaps = 7/101 (6%)
 Strand = Plus / Plus

                                                                            
Query: 242      caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 294
                |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 24921676 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 24921735

                                                         
Query: 295      ctcgcaaaaatatacagctcaaaactggctgttgctcacat 335
                || ||||||||||||||| ||||||||||||||||||||||
Sbjct: 24921736 cttgcaaaaatatacagcacaaaactggctgttgctcacat 24921776

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>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full
            insert sequence
          Length = 2907

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 53   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 111
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 2795 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 2736

                                      
Query: 112  gtgtaagaactgaaaagaaataataa 137
            ||||| | || |||||||| ||||||
Sbjct: 2735 gtgtacgcacagaaaagaactaataa 2710



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 87/101 (86%), Gaps = 7/101 (6%)
 Strand = Plus / Minus

                                                                        
Query: 242  caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 294
            |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 2639 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 2580

                                                     
Query: 295  ctcgcaaaaatatacagctcaaaactggctgttgctcacat 335
            || ||||||||||||||| ||||||||||||||||||||||
Sbjct: 2579 cttgcaaaaatatacagcacaaaactggctgttgctcacat 2539

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>dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A02, full
            insert sequence
          Length = 1712

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 53   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 111
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1701 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 1642

                                      
Query: 112  gtgtaagaactgaaaagaaataataa 137
            ||||| | || |||||||| ||||||
Sbjct: 1641 gtgtacgcacagaaaagaactaataa 1616



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 87/101 (86%), Gaps = 7/101 (6%)
 Strand = Plus / Minus

                                                                        
Query: 242  caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 294
            |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 1545 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 1486

                                                     
Query: 295  ctcgcaaaaatatacagctcaaaactggctgttgctcacat 335
            || ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1485 cttgcaaaaatatacagcacaaaactggctgttgctcacat 1445

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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 53    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 111
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 49634 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 49693

                                       
Query: 112   gtgtaagaactgaaaagaaataataa 137
             ||||| | || |||||||| ||||||
Sbjct: 49694 gtgtacgcacagaaaagaactaataa 49719



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 87/101 (86%), Gaps = 7/101 (6%)
 Strand = Plus / Plus

                                                                         
Query: 242   caaaatccatggcttcttcctttcctcc-------aaacaataatcaacactcatgtaac 294
             |||||||||||||||||| ||||||| |       |||||||||| ||||||||| | ||
Sbjct: 49790 caaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgac 49849

                                                      
Query: 295   ctcgcaaaaatatacagctcaaaactggctgttgctcacat 335
             || ||||||||||||||| ||||||||||||||||||||||
Sbjct: 49850 cttgcaaaaatatacagcacaaaactggctgttgctcacat 49890

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>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar Gigante
          Length = 2599

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                        
Query: 270  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 329
            |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2572 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2513

                  
Query: 330  tcacat 335
            ||||||
Sbjct: 2512 tcacat 2507

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>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar IR64
          Length = 2599

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 86/100 (86%), Gaps = 7/100 (7%)
 Strand = Plus / Minus

                                                                        
Query: 243  aaaatccatggcttcttcctttcc-------tccaaacaataatcaacactcatgtaacc 295
            ||||||||||||||||| ||||||       || |||||||||| ||||||||| | |||
Sbjct: 2599 aaaatccatggcttctttctttccttcgttgtcgaaacaataatgaacactcatctgacc 2540

                                                    
Query: 296  tcgcaaaaatatacagctcaaaactggctgttgctcacat 335
            | ||||||||||||||| ||||||||||||||||||||||
Sbjct: 2539 ttgcaaaaatatacagcacaaaactggctgttgctcacat 2500

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>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation
            factor 4 gamma (eif(iso)4g gene), cultivar Tog5681
          Length = 2699

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                        
Query: 270  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 329
            |||||||||  ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2666 aaacaataacgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2607

                  
Query: 330  tcacat 335
            ||||||
Sbjct: 2606 tcacat 2601

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>gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence
          Length = 249

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 281 aacactcatgtaacctcgcaaaaatatacagctcaaaactggctgtt 327
           ||||||||| | | ||||||||| |||||||| ||||||||||||||
Sbjct: 132 aacactcatctgatctcgcaaaattatacagcccaaaactggctgtt 178



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 243 aaaatccatggcttcttcctttcc 266
           ||||||||||||||||| ||||||
Sbjct: 74  aaaatccatggcttctttctttcc 97

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>gb|AY110434.1| Zea mays CL533_2 mRNA sequence
          Length = 843

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 295 ctcgcaaaaatatacagctcaaaactggctgtt 327
           ||||||||| |||||||| ||||||||||||||
Sbjct: 600 ctcgcaaaattatacagcccaaaactggctgtt 568



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 243 aaaatccatggcttcttcctttcc 266
           ||||||||||||||||| ||||||
Sbjct: 672 aaaatccatggcttctttctttcc 649

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>gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete sequence
          Length = 92346

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 152   caaaaacatcccatttgacagaagaag 178
             |||||||||||||||||| ||||||||
Sbjct: 45816 caaaaacatcccatttgagagaagaag 45842

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>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence
          Length = 105045

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 152   caaaaacatcccatttgacagaagaag 178
             |||||||||||||||||| ||||||||
Sbjct: 28363 caaaaacatcccatttgagagaagaag 28337

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>emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5 on chromosome X, complete
            sequence
          Length = 39550

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 116  aagaactgaaaagaaataataacatt 141
            |||| |||||||||||||||||||||
Sbjct: 3229 aagagctgaaaagaaataataacatt 3204

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>emb|CR388387.10| Zebrafish DNA sequence from clone DKEY-260J18 in linkage group 20,
             complete sequence
          Length = 138115

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 200   tcccagactccagcaagagttaggccgccg 229
             ||||||||||||||||||||  ||||||||
Sbjct: 40194 tcccagactccagcaagagtatggccgccg 40223

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>gb|AY109824.1| Zea mays CL533_1 mRNA sequence
          Length = 2894

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 295  ctcgcaaaaatatacagctcaaaactggctgttgctca 332
            ||||||||| |||||||||||||| || ||||| ||||
Sbjct: 2656 ctcgcaaaattatacagctcaaaattgtctgttcctca 2619

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>gb|AC182813.8| Medicago truncatula clone mth2-69k1, complete sequence
          Length = 131049

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     aaaataatcttaaattcagtt 35
              |||||||||||||||||||||
Sbjct: 100850 aaaataatcttaaattcagtt 100830

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>gb|AC174297.11| Medicago truncatula clone mth2-73p24, complete sequence
          Length = 115210

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    aaaataatcttaaattcagtt 35
             |||||||||||||||||||||
Sbjct: 48268 aaaataatcttaaattcagtt 48248

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>gb|AC144540.7| Medicago truncatula clone mth2-19p16, complete sequence
          Length = 78737

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    aaaataatcttaaattcagtt 35
             |||||||||||||||||||||
Sbjct: 25465 aaaataatcttaaattcagtt 25445

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>gb|AC146745.20| Medicago truncatula clone mth2-53p19, complete sequence
          Length = 121952

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    aaaataatcttaaattcagtt 35
             |||||||||||||||||||||
Sbjct: 34894 aaaataatcttaaattcagtt 34914

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>gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete sequence
          Length = 92738

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    aaaataatcttaaattcagtt 35
             |||||||||||||||||||||
Sbjct: 85376 aaaataatcttaaattcagtt 85396

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>gb|AC140722.11| Medicago truncatula clone mth2-14e20, complete sequence
          Length = 97982

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    aaaataatcttaaattcagtt 35
             |||||||||||||||||||||
Sbjct: 42222 aaaataatcttaaattcagtt 42202

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>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 44     ctacaatgctgacacgatatattgt 68
              |||||||||||| ||||||||||||
Sbjct: 122731 ctacaatgctgaaacgatatattgt 122707

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>emb|CT033770.2| Medicago truncatula chromosome 5 clone mth2-176e1, COMPLETE SEQUENCE
          Length = 138194

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    aaaataatcttaaattcagtt 35
             |||||||||||||||||||||
Sbjct: 84861 aaaataatcttaaattcagtt 84841

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>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   gaaaagaaataataacattg 142
             ||||||||||||||||||||
Sbjct: 39323 gaaaagaaataataacattg 39342

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>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence
          Length = 186062

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    aaattgtgtaagaactgaaa 126
              ||||||||||||||||||||
Sbjct: 107485 aaattgtgtaagaactgaaa 107504

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>gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome 13, complete sequence
          Length = 205869

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ccatggcttcttcctttcct 267
             ||||||||||||||||||||
Sbjct: 31484 ccatggcttcttcctttcct 31503

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>emb|CR376778.9| Zebrafish DNA sequence from clone DKEYP-94F12 in linkage group 25,
              complete sequence
          Length = 185814

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    tcccagactccagcaagagt 219
              ||||||||||||||||||||
Sbjct: 154043 tcccagactccagcaagagt 154024

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>emb|CR318599.18| Zebrafish DNA sequence from clone DKEY-28D5 in linkage group 22, complete
              sequence
          Length = 222575

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    tcccagactccagcaagagt 219
              ||||||||||||||||||||
Sbjct: 194407 tcccagactccagcaagagt 194426

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>gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, complete sequence
          Length = 192584

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 103    ttacaaattgtgtaagaactgaaaagaaataa 134
              |||||||| || ||||||||||||| ||||||
Sbjct: 132634 ttacaaatagtttaagaactgaaaataaataa 132665

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>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 170859

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   tgaaaagaaataataacatt 141
             ||||||||||||||||||||
Sbjct: 30825 tgaaaagaaataataacatt 30844

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>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete
           sequence
          Length = 164559

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 110 ttgtgtaagaactgaaaagaaata 133
           |||||||||||||||||| |||||
Sbjct: 55  ttgtgtaagaactgaaaaaaaata 32

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>emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chromosome 9 Contains a
             novel pseudogene, complete sequence
          Length = 110443

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   caaaaatatacagctcaaaa 318
             ||||||||||||||||||||
Sbjct: 35208 caaaaatatacagctcaaaa 35189

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>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the 3'
              end of a novel gene, and a novel pseudogene, complete
              sequence
          Length = 131366

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 110    ttgtgtaagaactgaaaagaaata 133
              |||||||||||||||||| |||||
Sbjct: 129421 ttgtgtaagaactgaaaaaaaata 129398

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>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   tgaaaagaaataataacatt 141
             ||||||||||||||||||||
Sbjct: 41625 tgaaaagaaataataacatt 41606

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>emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo-8-phosphate synthase, exons
           1-4
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 115 taagaactgaaaagaaataa 134
           ||||||||||||||||||||
Sbjct: 639 taagaactgaaaagaaataa 620

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>emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in linkage group 24,
             complete sequence
          Length = 152666

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    atgctgacacgatatattgt 68
             ||||||||||||||||||||
Sbjct: 54458 atgctgacacgatatattgt 54439

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>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     atgctgacacgatatattgt 68
              ||||||||||||||||||||
Sbjct: 198757 atgctgacacgatatattgt 198776

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>emb|BX004857.10| Zebrafish DNA sequence from clone CH211-217I17, complete sequence
          Length = 155624

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    tcccagactccagcaagagt 219
              ||||||||||||||||||||
Sbjct: 127917 tcccagactccagcaagagt 127898

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>emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 in linkage group 20,
             complete sequence
          Length = 86384

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   tgaaaagaaataataacatt 141
             ||||||||||||||||||||
Sbjct: 84744 tgaaaagaaataataacatt 84763

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>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence
          Length = 96678

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   acaaattgtgtaagaactga 124
             ||||||||||||||||||||
Sbjct: 56401 acaaattgtgtaagaactga 56382

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>dbj|AK135378.1| Mus musculus 12 days embryo female mullerian duct includes
            surrounding region cDNA, RIKEN full-length enriched
            library, clone:6820409O14 product:unclassifiable, full
            insert sequence
          Length = 3242

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 309  cagctcaaaactggctgttg 328
            ||||||||||||||||||||
Sbjct: 2547 cagctcaaaactggctgttg 2566

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>gb|AC008650.8| Homo sapiens chromosome 5 clone CTB-186M2, complete sequence
          Length = 139226

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    aagccaaaataatcttaaat 29
             ||||||||||||||||||||
Sbjct: 28464 aagccaaaataatcttaaat 28483

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>gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, complete sequence
          Length = 41476

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 112  gtgtaagaactgaaaagaaa 131
            ||||||||||||||||||||
Sbjct: 5836 gtgtaagaactgaaaagaaa 5855

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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 115    taagaactgaaaagaaataataac 138
              |||||||| |||||||||||||||
Sbjct: 183747 taagaacttaaaagaaataataac 183724

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>emb|BX005055.5| Zebrafish DNA sequence from clone CH211-188N23 in linkage group 23,
              complete sequence
          Length = 156598

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    tcccagactccagcaagagt 219
              ||||||||||||||||||||
Sbjct: 118460 tcccagactccagcaagagt 118441

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>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   gaaaagaaataataacattg 142
             ||||||||||||||||||||
Sbjct: 65829 gaaaagaaataataacattg 65810

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>emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, complete sequence
          Length = 145569

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    atgctgacacgatatattgt 68
             ||||||||||||||||||||
Sbjct: 50947 atgctgacacgatatattgt 50928

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>emb|CR769777.13| Zebrafish DNA sequence from clone DKEY-189D19 in linkage group 18,
              complete sequence
          Length = 124874

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    tcccagactccagcaagagt 219
              ||||||||||||||||||||
Sbjct: 117178 tcccagactccagcaagagt 117197

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>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
             complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    atgctgacacgatatattgt 68
             ||||||||||||||||||||
Sbjct: 46843 atgctgacacgatatattgt 46824

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>emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in linkage group 20,
           complete sequence
          Length = 9831

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 tgaaaagaaataataacatt 141
           ||||||||||||||||||||
Sbjct: 360 tgaaaagaaataataacatt 379

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>emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 in linkage group 20,
             complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    atgctgacacgatatattgt 68
             ||||||||||||||||||||
Sbjct: 78894 atgctgacacgatatattgt 78875

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>emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in linkage group 20,
             complete sequence
          Length = 209360

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    atgctgacacgatatattgt 68
             ||||||||||||||||||||
Sbjct: 38990 atgctgacacgatatattgt 38971

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>emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete
              sequence
          Length = 203311

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    gctcaaaactggctgttgct 330
              ||||||||||||||||||||
Sbjct: 133196 gctcaaaactggctgttgct 133215

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>emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-99L13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178433

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 135   taacattggaggagacacaaaaac 158
             ||||||||||||||||||| ||||
Sbjct: 93093 taacattggaggagacacataaac 93116

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>gb|AC163101.9| Mus musculus chromosome 18, clone RP24-177G6, complete sequence
          Length = 154555

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    cagctcaaaactggctgttg 328
              ||||||||||||||||||||
Sbjct: 125944 cagctcaaaactggctgttg 125963

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>gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, complete sequence
          Length = 242449

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   cagctcaaaactggctgttg 328
             ||||||||||||||||||||
Sbjct: 68402 cagctcaaaactggctgttg 68421

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>emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in linkage group 1,
              complete sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     atgctgacacgatatattgt 68
              ||||||||||||||||||||
Sbjct: 135077 atgctgacacgatatattgt 135096

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>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  gaaaagaaataataacattg 142
            ||||||||||||||||||||
Sbjct: 7379 gaaaagaaataataacattg 7360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,085,921
Number of Sequences: 3902068
Number of extensions: 4085921
Number of successful extensions: 93942
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93775
Number of HSP's gapped (non-prelim): 161
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result