ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl56h07 |
|---|---|
| Clone Library Name | barley_pub |
>LPAT1_ARATH (Q8GXU8) 1-acyl-sn-glycerol-3-phosphate acyltransferase 1,| chloroplast precursor (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 1) Length = 356 Score = 30.8 bits (68), Expect = 0.85 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -3 Query: 184 LSCLGRCFSLLKRGLRFFFIFPEG 113 + CL RC LLK+G FF FPEG Sbjct: 253 VDCLKRCMELLKKGASVFF-FPEG 275
>LPAT1_BRANA (Q9LLY4) 1-acyl-sn-glycerol-3-phosphate acyltransferase 1,| chloroplast precursor (EC 2.3.1.51) Length = 344 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 184 LSCLGRCFSLLKRGLRFFFIFPEG 113 + CL RC L+K+G FF FPEG Sbjct: 239 VDCLKRCMELVKKGASVFF-FPEG 261
>KOK0_YEAST (Q12236) Probable serine/threonine-protein kinase YOL100W (EC| 2.7.11.1) Length = 1081 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%) Frame = +3 Query: 111 IPSGKMKKNLNPLFSREK--HLPKH----DNPHRAEVN*NIS--IC*ARHNRPMADEVVT 266 +PS + K N+N L +EK HL H P R+ N N+ + R +PM + +T Sbjct: 15 LPSDEQKLNINLLTKKEKFSHLDPHYDAKATPQRSTSNRNVGDLLLEKRTAKPMIQKALT 74 Query: 267 ETRHKIQL 290 T + I++ Sbjct: 75 NTDNFIEM 82
>Y1463_METTH (Q50500) Hypothetical protein MTH1463 (ORF11)| Length = 142 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Frame = -2 Query: 344 MIGLINQSSSRR*ELVGIKLYFVTSFRNYLI-------CHGTVVSSLTNRDVLVNFSSVG 186 M GLI ++S+ G+K+ +N+++ CH TV+ S+ R+V + ++G Sbjct: 58 MYGLIVAATSKGLRARGVKMELNDLRKNHIVFVKYGDTCHYTVIMSMDERNVTLADPALG 117 Query: 185 VVMLRQMFF 159 + +++ F Sbjct: 118 RITVKREIF 126
>TAH18_YARLI (Q6CCH0) Probable NADPH reductase TAH18 (EC 1.-.-.-)| Length = 688 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/48 (31%), Positives = 20/48 (41%) Frame = -2 Query: 248 HGTVVSSLTNRDVLVNFSSVGVVMLRQMFFPAEKRVEVFLHFPRRNTE 105 H T + L N DV++ GV +R + E E L F R E Sbjct: 535 HSTPIPDLDNYDVIMVAPGTGVAPMRSLILSRESEKETVLFFGNRFRE 582
>TNA2_SYMTH (P31015) Tryptophanase 2 (EC 4.1.99.1) (L-tryptophan indole-lyase| 2) (TNase 2) Length = 453 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = -1 Query: 297 GNQAVFCDEFP*LPHLPWD 241 G AVF D LPH+PWD Sbjct: 338 GGHAVFIDAAKFLPHIPWD 356
>TNA1_SYMTH (P31014) Tryptophanase 1 (EC 4.1.99.1) (L-tryptophan indole-lyase| 1) (TNase 1) Length = 454 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = -1 Query: 297 GNQAVFCDEFP*LPHLPWD 241 G AVF D LPH+PWD Sbjct: 339 GGHAVFIDAAKFLPHVPWD 357
>LPXB_PSESM (Q886N0) Lipid-A-disaccharide synthase (EC 2.4.1.182)| Length = 380 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 92 VWCWRHTEVLRKNIGCLLLYTVL 24 VW WR VL+ GC L+ T+L Sbjct: 123 VWAWRQKRVLKIREGCDLMLTLL 145
>LPXB_PSEPK (Q88MG7) Lipid-A-disaccharide synthase (EC 2.4.1.182)| Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 92 VWCWRHTEVLRKNIGCLLLYTVL 24 VW WR VL+ GC L+ T+L Sbjct: 122 VWAWRQKRVLKIREGCDLMLTLL 144
>DNAC_BUCAP (Q8KA79) DNA replication protein dnaC| Length = 246 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 19/70 (27%) Frame = -2 Query: 290 KLYFVTSFRNYLICHGTVV-------------------SSLTNRDVLVNFSSVGVVMLRQ 168 K + ++ NYLI HG + S++T ++L N SSV ++M+ + Sbjct: 112 KNHLASAIGNYLILHGKSILIVTVADLMSNMKGTFSGTSNITEENLLHNLSSVDLLMIDE 171 Query: 167 MFFPAEKRVE 138 + E R E Sbjct: 172 IGMQTESRYE 181
>TYPA_HAEIN (P44910) GTP-binding protein typA/bipA homolog| Length = 616 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = +1 Query: 130 RKTSTLFSAGKNICLSMTTPTELKLTRTSRFVKLDTTV---PWQMR*LRKLVTK 282 +K + + ++GK+ + +TTP + L + F+ D V P +R +KL+T+ Sbjct: 547 KKLTNMRASGKDDAIVLTTPVKFSLEQAIEFIDDDELVEVTPESIRIRKKLLTE 600
>PDPK1_CAEEL (Q9Y1J3) 3-phophoinositide-dependent protein kinase 1 (EC 2.7.11.1)| (Pdk-class protein kinase protein 1) Length = 636 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 13/46 (28%) Frame = -3 Query: 193 LWGLSC-LGRC------------FSLLKRGLRFFFIFPEGIPNDKS 95 +WGL C L +C + LLKR F FPEG P + S Sbjct: 293 IWGLGCILFQCLAGQPPFRAVNQYHLLKRIQELDFSFPEGFPEEAS 338
>GNPTA_MOUSE (Q69ZN6) N-acetylglucosamine-1-phosphotransferase subunits| alpha/beta precursor (EC 2.7.8.17) (GlcNAc-1-phosphotransferase alpha/beta subunits) (UDP-N-acetylglucosamine-1-phosphotransferase alpha/beta subunits) (Stealth protein GNPTAB) [Conta Length = 1235 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = +3 Query: 129 KKNLNPLF-SREKHLPKHDNPHRAEVN 206 K+NL+PL E HLPK + RAE N Sbjct: 824 KENLSPLIVPPESHLPKEEESDRAEGN 850 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,787,897 Number of Sequences: 219361 Number of extensions: 1019237 Number of successful extensions: 2535 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2488 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2535 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
