ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence 54 4e-04
2gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence 54 4e-04
3ref|XM_466651.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.025
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
5dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
6dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
7dbj|AK100424.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
8gb|AC102575.11| Mus musculus chromosome 14, clone RP23-239P22, c... 42 1.5
9gb|AY466342.1| Litopenaeus vannamei microsatellite TUMXLV9.170 s... 40 6.1
10gb|AC108677.4| Homo sapiens 3 BAC RP11-1P14 (Roswell Park Cancer... 40 6.1
11dbj|AK030271.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.1
12emb|BX284619.11| Zebrafish DNA sequence from clone DKEY-251E24 i... 40 6.1
13gb|AY112372.1| Zea mays CL6272_1 mRNA sequence 40 6.1
14emb|BX005212.7| Zebrafish DNA sequence from clone DKEY-221H2 in ... 40 6.1 
>gb|AY664418.1| Zea mays cultivar Mo17 locus 9008, complete sequence
          Length = 282600

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                        
Query: 394   tgttttcctcggcttgagacgccagcttcacgatgtcctccacacggatctttccttct 452
             |||||||||| | ||| |||||||||||||| ||||| |||||| |||| || ||||||
Sbjct: 47590 tgttttcctctgtttgtgacgccagcttcacaatgtcttccacaaggatattcccttct 47532
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>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence
          Length = 339089

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                        
Query: 394   tgttttcctcggcttgagacgccagcttcacgatgtcctccacacggatctttccttct 452
             |||||||||| | ||| |||||||||||||| ||||| |||||| |||| || ||||||
Sbjct: 19665 tgttttcctctgtttgtgacgccagcttcacaatgtcttccacaaggatattcccttct 19607
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>ref|XM_466651.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2967

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 414  gccagcttcacgatgtcctccacacggatctt 445
            ||||||||||| ||||| ||||||||||||||
Sbjct: 2566 gccagcttcacaatgtcttccacacggatctt 2535



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 95   agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 153
            |||||||||||||||| |  |||||  ||||||||| |||| | ||| ||||| ||||||
Sbjct: 2902 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 2844

                                     
Query: 154  tatatgcaagtcatcatcttcacag 178
            |||||| |||||  |||||| ||||
Sbjct: 2843 tatatgaaagtccacatctttacag 2819
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 414      gccagcttcacgatgtcctccacacggatctt 445
                ||||||||||| ||||| ||||||||||||||
Sbjct: 23886321 gccagcttcacaatgtcttccacacggatctt 23886352



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                            
Query: 95       agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 153
                |||||||||||||||| |  |||||  ||||||||| |||| | ||| ||||| ||||||
Sbjct: 23885985 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 23886043

                                         
Query: 154      tatatgcaagtcatcatcttcacag 178
                |||||| |||||  |||||| ||||
Sbjct: 23886044 tatatgaaagtccacatctttacag 23886068
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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0030C08
          Length = 163423

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 414    gccagcttcacgatgtcctccacacggatctt 445
              ||||||||||| ||||| ||||||||||||||
Sbjct: 107987 gccagcttcacaatgtcttccacacggatctt 108018



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                          
Query: 95     agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 153
              |||||||||||||||| |  |||||  ||||||||| |||| | ||| ||||| ||||||
Sbjct: 107651 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 107709

                                       
Query: 154    tatatgcaagtcatcatcttcacag 178
              |||||| |||||  |||||| ||||
Sbjct: 107710 tatatgaaagtccacatctttacag 107734
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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0496E03
          Length = 138622

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 414   gccagcttcacgatgtcctccacacggatctt 445
             ||||||||||| ||||| ||||||||||||||
Sbjct: 20285 gccagcttcacaatgtcttccacacggatctt 20316



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                         
Query: 95    agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 153
             |||||||||||||||| |  |||||  ||||||||| |||| | ||| ||||| ||||||
Sbjct: 19949 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 20007

                                      
Query: 154   tatatgcaagtcatcatcttcacag 178
             |||||| |||||  |||||| ||||
Sbjct: 20008 tatatgaaagtccacatctttacag 20032
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>dbj|AK100424.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088B16, full
            insert sequence
          Length = 2967

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 414  gccagcttcacgatgtcctccacacggatctt 445
            ||||||||||| ||||| ||||||||||||||
Sbjct: 2566 gccagcttcacaatgtcttccacacggatctt 2535



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 71/85 (83%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 95   agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 153
            |||||||||||||||| |  |||||  ||||||||| |||| | ||| ||||| ||||||
Sbjct: 2902 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 2844

                                     
Query: 154  tatatgcaagtcatcatcttcacag 178
            |||||| |||||  |||||| ||||
Sbjct: 2843 tatatgaaagtccacatctttacag 2819
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>gb|AC102575.11| Mus musculus chromosome 14, clone RP23-239P22, complete sequence
          Length = 238123

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      tcagaacttggaatagatctt 23
              |||||||||||||||||||||
Sbjct: 176935 tcagaacttggaatagatctt 176955
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>gb|AY466342.1| Litopenaeus vannamei microsatellite TUMXLV9.170 sequence
          Length = 692

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  aacagtattttctctcccat 94
           ||||||||||||||||||||
Sbjct: 302 aacagtattttctctcccat 283
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>gb|AC108677.4| Homo sapiens 3 BAC RP11-1P14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 107650

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    caaaaacagtattttctctc 90
             ||||||||||||||||||||
Sbjct: 48975 caaaaacagtattttctctc 48956
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>dbj|AK030271.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4933440I24 product:unclassifiable, full
           insert sequence
          Length = 2394

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 18  gatcttataaaattctcagattgt 41
           |||||||||||||||||| |||||
Sbjct: 756 gatcttataaaattctcaaattgt 733
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>emb|BX284619.11| Zebrafish DNA sequence from clone DKEY-251E24 in linkage group 1,
             complete sequence
          Length = 196931

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 4     cagaacttggaatagatcttataaaatt 31
             ||||||||||| ||||||| ||||||||
Sbjct: 93203 cagaacttggattagatctgataaaatt 93230
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>gb|AY112372.1| Zea mays CL6272_1 mRNA sequence
          Length = 1354

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 412 acgccagcttcacgatgtcctccacacggatctttccttc 451
           ||||||||||||| ||||| |||||| |||| || |||||
Sbjct: 870 acgccagcttcacaatgtcttccacaaggatattcccttc 831
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>emb|BX005212.7| Zebrafish DNA sequence from clone DKEY-221H2 in linkage group 1, complete
              sequence
          Length = 272535

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 4      cagaacttggaatagatcttataaaatt 31
              ||||||||||| ||||||| ||||||||
Sbjct: 110601 cagaacttggattagatctgataaaatt 110628


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,404,419
Number of Sequences: 3902068
Number of extensions: 3404419
Number of successful extensions: 59166
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59118
Number of HSP's gapped (non-prelim): 43
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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