ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC117246.3| Mus musculus BAC clone RP24-317G19 from 17, compl... 46 0.072
2ref|XM_478167.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
4dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
5dbj|AK070976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
6dbj|AK065480.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
7dbj|AK061972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
8gb|AF499741.1| Oryza sativa CaM-binding transcription factor (CB... 42 1.1
9emb|AL808028.5| Mouse DNA sequence from clone RP23-18H24 on chro... 42 1.1
10gb|AF036700.1| Caenorhabditis elegans cosmid M04G7, complete seq... 40 4.4
11gb|AC127680.3| Mus musculus BAC clone RP24-159F1 from chromosome... 40 4.4
12gb|AC158364.4| Mus musculus BAC clone RP23-187J8 from chromosome... 40 4.4
13emb|CT025708.8| Mouse DNA sequence from clone RP24-331C1 on chro... 40 4.4
14gb|AC121595.3| Mus musculus BAC clone RP23-299A12 from chromosom... 40 4.4
15emb|AL358934.19| Human DNA sequence from clone RP11-459D20 on ch... 40 4.4
16emb|Z99260.2|SPAC3A11 S.pombe chromosome I cosmid c3A11 40 4.4
17gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, co... 40 4.4
18emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment ... 40 4.4
19emb|AL669842.11| Mouse DNA sequence from clone RP23-25D18 on chr... 40 4.4
20emb|BX511086.5| Zebrafish DNA sequence from clone DKEY-38P8 in l... 40 4.4
21emb|BX640518.5| Zebrafish DNA sequence from clone DKEY-278M12 in... 40 4.4
22emb|BX663520.9| Zebrafish DNA sequence from clone DKEY-105H12 in... 40 4.4
23ref|NM_001019618.1| Schizosaccharomyces pombe 972h- hypothetical... 40 4.4
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
25gb|AC020604.9| Homo sapiens BAC clone RP11-536C12 from 2, comple... 40 4.4
26gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, com... 40 4.4
27dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
28dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
29emb|BX119993.9| Mouse DNA sequence from clone RP23-13I18 on chro... 40 4.4
30emb|BX548056.3| Mouse DNA sequence from clone RP23-240D4 on chro... 40 4.4
31emb|BX957242.15| Zebrafish DNA sequence from clone CH211-129B17 ... 40 4.4
32gb|AC007066.4|AC007066 Homo sapiens chromosome 9, clone hRPK.355... 40 4.4
33emb|AL133453.3|CNS01DV4 Human chromosome 14 DNA sequence BAC R-8... 40 4.4
34gb|BC029161.1| Mus musculus netrin 1, mRNA (cDNA clone IMAGE:495... 40 4.4
35gb|BC019633.1| Mus musculus netrin 1, mRNA (cDNA clone IMAGE:367... 40 4.4
36gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, compl... 40 4.4
37gb|AC132126.3| Mus musculus BAC clone RP23-400E10 from 8, comple... 40 4.4
38dbj|AP004479.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 4.4
39gb|U38845.1|ATU38845 Arabidopsis thaliana nitrilase 2 (NIT2) and... 40 4.4 
>gb|AC117246.3| Mus musculus BAC clone RP24-317G19 from 17, complete sequence
          Length = 174227

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 22    gaaaataaaatatgaaatgtcaaggtaaata 52
             |||||||||||||||||| | ||||||||||
Sbjct: 63965 gaaaataaaatatgaaatttgaaggtaaata 63995
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>ref|XM_478167.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3174

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 221  atcaatcagatggtcctaaaatgta 245
            |||| ||||||||||||||||||||
Sbjct: 2946 atcattcagatggtcctaaaatgta 2922
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 221      atcaatcagatggtcctaaaatgta 245
                |||| ||||||||||||||||||||
Sbjct: 18151929 atcattcagatggtcctaaaatgta 18151953
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>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0477A12
          Length = 138141

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 221   atcaatcagatggtcctaaaatgta 245
             |||| ||||||||||||||||||||
Sbjct: 87235 atcattcagatggtcctaaaatgta 87259
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>dbj|AK070976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073E17, full
            insert sequence
          Length = 3174

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 221  atcaatcagatggtcctaaaatgta 245
            |||| ||||||||||||||||||||
Sbjct: 2946 atcattcagatggtcctaaaatgta 2922
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>dbj|AK065480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025F20, full
            insert sequence
          Length = 3001

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 221  atcaatcagatggtcctaaaatgta 245
            |||| ||||||||||||||||||||
Sbjct: 2776 atcattcagatggtcctaaaatgta 2752
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>dbj|AK061972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H08, full
            insert sequence
          Length = 1853

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 221  atcaatcagatggtcctaaaatgta 245
            |||| ||||||||||||||||||||
Sbjct: 1657 atcattcagatggtcctaaaatgta 1633
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>gb|AF499741.1| Oryza sativa CaM-binding transcription factor (CBT) mRNA, complete
            cds
          Length = 3134

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 221  atcaatcagatggtcctaaaatgta 245
            |||| ||||||||||||||||||||
Sbjct: 2922 atcattcagatggtcctaaaatgta 2898
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>emb|AL808028.5| Mouse DNA sequence from clone RP23-18H24 on chromosome X, complete
              sequence
          Length = 170380

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 12     ccaccaaagtgaaaataaaat 32
              |||||||||||||||||||||
Sbjct: 145734 ccaccaaagtgaaaataaaat 145714
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>gb|AF036700.1| Caenorhabditis elegans cosmid M04G7, complete sequence
          Length = 41778

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    tgaaaataaaatatgaaatgtcaa 44
             ||||||||||||||||| ||||||
Sbjct: 41431 tgaaaataaaatatgaactgtcaa 41454
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>gb|AC127680.3| Mus musculus BAC clone RP24-159F1 from chromosome X, complete sequence
          Length = 199848

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 29     aaatatgaaatgtcaaggtaaata 52
              ||||||| ||||||||||||||||
Sbjct: 139230 aaatatggaatgtcaaggtaaata 139253
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>gb|AC158364.4| Mus musculus BAC clone RP23-187J8 from chromosome 8, complete sequence
          Length = 208153

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 5      taattgaccaccaaagtgaaaataaaat 32
              ||||||||||||||  ||||||||||||
Sbjct: 178620 taattgaccaccaacatgaaaataaaat 178647
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>emb|CT025708.8| Mouse DNA sequence from clone RP24-331C1 on chromosome 17, complete
             sequence
          Length = 205598

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    aaatatgaaatgtcaaggta 48
             ||||||||||||||||||||
Sbjct: 65115 aaatatgaaatgtcaaggta 65134
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>gb|AC121595.3| Mus musculus BAC clone RP23-299A12 from chromosome X, complete sequence
          Length = 214297

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    aaaataaaatatgaaatgtc 42
             ||||||||||||||||||||
Sbjct: 53770 aaaataaaatatgaaatgtc 53789
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>emb|AL358934.19| Human DNA sequence from clone RP11-459D20 on chromosome 9 Contains a
             transcription factor IIA small 12 kDa subunit (GTF2A2)
             pseudogene, complete sequence
          Length = 95922

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    tgaaaataaaatatgaaatg 40
             ||||||||||||||||||||
Sbjct: 76722 tgaaaataaaatatgaaatg 76741
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>emb|Z99260.2|SPAC3A11 S.pombe chromosome I cosmid c3A11
          Length = 30562

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   ccagattcggccaaaagcat 222
             ||||||||||||||||||||
Sbjct: 10567 ccagattcggccaaaagcat 10586
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>gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, complete sequence
          Length = 141449

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    ggtcattggcccaggtggca 80
             ||||||||||||||||||||
Sbjct: 61226 ggtcattggcccaggtggca 61245
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>emb|BX294140.1| Pirellula sp. strain 1 complete genome; segment 8/24
          Length = 307050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    caggcaaattgcaaaccacg 175
              ||||||||||||||||||||
Sbjct: 208246 caggcaaattgcaaaccacg 208227
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>emb|AL669842.11| Mouse DNA sequence from clone RP23-25D18 on chromosome 11 Contains
             three novel genes, the 3' end of the Ntn1 gene for netrin
             1 and the 3' end of the Stx8 gene for syntaxin 8, complete
             sequence
          Length = 121134

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   agaaagttgtggattttctt 275
             ||||||||||||||||||||
Sbjct: 63363 agaaagttgtggattttctt 63382
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>emb|BX511086.5| Zebrafish DNA sequence from clone DKEY-38P8 in linkage group 7,
             complete sequence
          Length = 228170

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 26    ataaaatatgaaatgtcaaggtaaatat 53
             |||||||||||||| ||| |||||||||
Sbjct: 14523 ataaaatatgaaatatcatggtaaatat 14550
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>emb|BX640518.5| Zebrafish DNA sequence from clone DKEY-278M12 in linkage group 24,
              complete sequence
          Length = 215186

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     aagtgaaaataaaatatgaa 37
              ||||||||||||||||||||
Sbjct: 202140 aagtgaaaataaaatatgaa 202159
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>emb|BX663520.9| Zebrafish DNA sequence from clone DKEY-105H12 in linkage group 15,
              complete sequence
          Length = 248279

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     aataaaatatgaaatgtcaa 44
              ||||||||||||||||||||
Sbjct: 213668 aataaaatatgaaatgtcaa 213649
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>ref|NM_001019618.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC3A11.09),
           partial mRNA
          Length = 2280

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 203 ccagattcggccaaaagcat 222
           ||||||||||||||||||||
Sbjct: 521 ccagattcggccaaaagcat 502
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 14       accaaagtgaaaataaaata 33
                ||||||||||||||||||||
Sbjct: 25981002 accaaagtgaaaataaaata 25980983
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>gb|AC020604.9| Homo sapiens BAC clone RP11-536C12 from 2, complete sequence
          Length = 130506

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    ataaaatatgaaatgtcaag 45
             ||||||||||||||||||||
Sbjct: 26649 ataaaatatgaaatgtcaag 26630
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>gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, complete sequence
          Length = 145042

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    ggtcattggcccaggtggca 80
             ||||||||||||||||||||
Sbjct: 41584 ggtcattggcccaggtggca 41565
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>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1282_H11
          Length = 143314

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     accaaagtgaaaataaaata 33
              ||||||||||||||||||||
Sbjct: 132343 accaaagtgaaaataaaata 132324
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>dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0030D07
          Length = 133321

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    accaaagtgaaaataaaata 33
             ||||||||||||||||||||
Sbjct: 44875 accaaagtgaaaataaaata 44856
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>emb|BX119993.9| Mouse DNA sequence from clone RP23-13I18 on chromosome X, complete
              sequence
          Length = 234697

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 29     aaatatgaaatgtcaaggtaaata 52
              ||||||| ||||||||||||||||
Sbjct: 139941 aaatatggaatgtcaaggtaaata 139918
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>emb|BX548056.3| Mouse DNA sequence from clone RP23-240D4 on chromosome X, complete
             sequence
          Length = 110099

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    aaaataaaatatgaaatgtc 42
             ||||||||||||||||||||
Sbjct: 79595 aaaataaaatatgaaatgtc 79576
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>emb|BX957242.15| Zebrafish DNA sequence from clone CH211-129B17 in linkage group 19,
             complete sequence
          Length = 167629

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    gtgaaaataaaatatgaaat 39
             ||||||||||||||||||||
Sbjct: 24975 gtgaaaataaaatatgaaat 24994
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>gb|AC007066.4|AC007066 Homo sapiens chromosome 9, clone hRPK.355_O_1, complete sequence
          Length = 190815

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   gttgtggattttcttaatgt 280
             ||||||||||||||||||||
Sbjct: 47815 gttgtggattttcttaatgt 47796
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>emb|AL133453.3|CNS01DV4 Human chromosome 14 DNA sequence BAC R-841O20 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 212103

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ataaaatatgaaatgtcaag 45
              ||||||||||||||||||||
Sbjct: 178678 ataaaatatgaaatgtcaag 178697
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>gb|BC029161.1| Mus musculus netrin 1, mRNA (cDNA clone IMAGE:4952261)
          Length = 2585

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 256  agaaagttgtggattttctt 275
            ||||||||||||||||||||
Sbjct: 2398 agaaagttgtggattttctt 2417
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>gb|BC019633.1| Mus musculus netrin 1, mRNA (cDNA clone IMAGE:3670705), with apparent
            retained intron
          Length = 1357

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 256  agaaagttgtggattttctt 275
            ||||||||||||||||||||
Sbjct: 1152 agaaagttgtggattttctt 1171
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>gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence
          Length = 140977

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    ggtcattggcccaggtggca 80
             ||||||||||||||||||||
Sbjct: 79744 ggtcattggcccaggtggca 79725
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>gb|AC132126.3| Mus musculus BAC clone RP23-400E10 from 8, complete sequence
          Length = 204800

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 5      taattgaccaccaaagtgaaaataaaat 32
              ||||||||||||||  ||||||||||||
Sbjct: 169938 taattgaccaccaacatgaaaataaaat 169911
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>dbj|AP004479.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT03H13, TM0012b,
             complete sequence
          Length = 41820

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    aaaataaaatatgaaatgtc 42
             ||||||||||||||||||||
Sbjct: 23721 aaaataaaatatgaaatgtc 23702
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>gb|U38845.1|ATU38845 Arabidopsis thaliana nitrilase 2 (NIT2) and nitrilase 1 (NIT1) genes,
            complete cds
          Length = 7378

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 265  tggattttcttaatgtacaa 284
            ||||||||||||||||||||
Sbjct: 1351 tggattttcttaatgtacaa 1332


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,019,296
Number of Sequences: 3902068
Number of extensions: 4019296
Number of successful extensions: 81396
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81276
Number of HSP's gapped (non-prelim): 120
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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