Clone Name | rbastl56g04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_185143.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1635 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acatcttttgatctactgct 167 |||||||||||||||||||| Sbjct: 167 acatcttttgatctactgct 148
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 acatcttttgatctactgct 167 |||||||||||||||||||| Sbjct: 34346547 acatcttttgatctactgct 34346566 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaatgtggagctttatttgt 22 |||||||||||||||||||| Sbjct: 18444867 aaatgtggagctttatttgt 18444848
>emb|CR658694.2|CNS0F77W Tetraodon nigroviridis full-length cDNA Length = 1048 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 agccaatgcaatatatgctg 362 |||||||||||||||||||| Sbjct: 254 agccaatgcaatatatgctg 273
>gb|AC007861.5| Homo sapiens chromosome 16 clone RP11-189E14, complete sequence Length = 175861 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 304 tgaaagcatcctccgaagccttcacttc 331 ||||||||||||| || ||||||||||| Sbjct: 139624 tgaaagcatcctcagaggccttcacttc 139597
>gb|AF526207.1| Argopecten irradians isolate iolsaicl19ct37cn42 ribosomal protein L4 mRNA, partial cds Length = 910 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggattaccagaaaaagaatgaagc 141 ||||||||||||| |||||||||| Sbjct: 667 ggattaccagaaatagaatgaagc 690
>emb|BX666062.6| Zebrafish DNA sequence from clone DKEY-99O18 in linkage group 2, complete sequence Length = 233488 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 atgcaatatatgctgacagt 367 |||||||||||||||||||| Sbjct: 131765 atgcaatatatgctgacagt 131784
>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete sequence Length = 115393 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acatcttttgatctactgct 167 |||||||||||||||||||| Sbjct: 103147 acatcttttgatctactgct 103128
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 acatcttttgatctactgct 167 |||||||||||||||||||| Sbjct: 34437019 acatcttttgatctactgct 34437038 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaatgtggagctttatttgt 22 |||||||||||||||||||| Sbjct: 18438908 aaatgtggagctttatttgt 18438889
>gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, complete sequence Length = 192347 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 304 tgaaagcatcctccgaagccttcacttc 331 ||||||||||||| || ||||||||||| Sbjct: 30696 tgaaagcatcctcagaggccttcacttc 30669
>gb|AC108719.3| Homo sapiens 3 BAC RP11-247J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 43088 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 atgctcttgaaagcatcctc 316 |||||||||||||||||||| Sbjct: 42554 atgctcttgaaagcatcctc 42535
>gb|AC131008.4| Homo sapiens 3 BAC RP11-113N7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 6835 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 atgctcttgaaagcatcctc 316 |||||||||||||||||||| Sbjct: 1470 atgctcttgaaagcatcctc 1451
>gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genomic sequence, complete sequence Length = 90673 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaatgtggagctttatttgt 22 |||||||||||||||||||| Sbjct: 36348 aaatgtggagctttatttgt 36367
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tatttgttgcagcatccaca 35 |||||||||||||||||||| Sbjct: 3189506 tatttgttgcagcatccaca 3189525
>emb|AL442639.2|HS5P15 Homo sapiens chromosome 9 BAC RP11-5P15, complete sequence Length = 165299 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 catatctatttgctcctctc 231 |||||||||||||||||||| Sbjct: 106748 catatctatttgctcctctc 106767
>emb|BX942839.9| Zebrafish DNA sequence from clone CH211-93F2 in linkage group 20, complete sequence Length = 173570 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tgttgcagcatccacaacag 39 |||||||||||||||||||| Sbjct: 104095 tgttgcagcatccacaacag 104076
>emb|AL591913.14| Mouse DNA sequence from clone RP23-120A4 on chromosome 15, complete sequence Length = 196812 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 accaaaggtgcatctcggtt 77 |||||||||||||||||||| Sbjct: 158967 accaaaggtgcatctcggtt 158948 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,459,809 Number of Sequences: 3902068 Number of extensions: 3459809 Number of successful extensions: 59063 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58901 Number of HSP's gapped (non-prelim): 162 length of query: 379 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 357 effective length of database: 17,147,199,772 effective search space: 6121550318604 effective search space used: 6121550318604 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)