ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YL392_YEAST (P18634) Hypothetical 59.8 kDa protein in SSR1-ATP10... 29 2.5
2MRP_STRSU (P32653) Muramidase-released protein precursor (136 kD... 29 3.3
3SPR1_SACBA (Q876J2) Sporulation-specific glucan 1,3-beta-glucosi... 29 3.3
4SPR1_YEAST (P32603) Sporulation-specific glucan 1,3-beta-glucosi... 28 4.3
5ZN272_HUMAN (Q14592) Zinc finger protein 272 (Zinc finger protei... 28 5.6
6PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit... 28 5.6
7AATC_YEAST (P23542) Aspartate aminotransferase, cytoplasmic (EC ... 28 7.3
8KPRS_LEPIN (Q8EZN0) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 27 9.5
9KPRS_LEPIC (Q72V73) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 27 9.5
10PC_DROME (P26017) Polycomb group protein Pc (Protein polycomb) 27 9.5

>YL392_YEAST (P18634) Hypothetical 59.8 kDa protein in SSR1-ATP10 intergenic|
           region
          Length = 518

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -1

Query: 294 RVEKDQPSQDGNEVEERNDGGLLNCRRSRRGKQSTKLKDLTSLYN*QKHLEHRMWSQGCC 115
           +++ ++P  D NE+ E  DG +  C    R K    L+ L       +H  +R++S   C
Sbjct: 402 QLKSNKPLLDLNEIRENFDGSMFEC--ELRLKDHPILRKLVFNEEDYRHRGNRLYSFKTC 459

Query: 114 PVKK 103
            +K+
Sbjct: 460 TIKR 463



to top

>MRP_STRSU (P32653) Muramidase-released protein precursor (136 kDa surface|
           protein)
          Length = 1256

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 33  KITFRVLIHHKMQPETS--FFHSCVISSLDSNLATTYDAPNASVNCKGSSSPSAS 191
           + T  VL  + ++P  S  F H   +++ +SN+  TYD   AS N  G+   SA+
Sbjct: 292 RTTGDVLEKYTIEPGESVTFSHPTKVNANNSNITVTYDTSLASANTPGALKFSAN 346



to top

>SPR1_SACBA (Q876J2) Sporulation-specific glucan 1,3-beta-glucosidase precursor|
           (EC 3.2.1.58) (Exo-1,3-beta-glucanase)
          Length = 445

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 199 AKHEAEGL--DEPLQLTEAFGASYVVARLLSSEEMTQEWKKEVSGCILWCMRTLNVILWD 26
           A +E  GL  +E  Q T  F     +   L + EMT  W       I+WC +T N I WD
Sbjct: 374 ANNENVGLWSEERKQNTRKF-----IEAQLDAFEMTGGW-------IMWCYKTENSIEWD 421

Query: 25  A*NVVQ 8
              ++Q
Sbjct: 422 VEKLIQ 427



to top

>SPR1_YEAST (P32603) Sporulation-specific glucan 1,3-beta-glucosidase precursor|
           (EC 3.2.1.58) (Exo-1,3-beta-glucanase)
          Length = 445

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 118 LSSEEMTQEWKKEVSGCILWCMRTLNVILWDA*NVVQ 8
           L + EMT  W       I+WC +T N I WD   ++Q
Sbjct: 398 LDAFEMTGGW-------IMWCYKTENSIEWDVEKLIQ 427



to top

>ZN272_HUMAN (Q14592) Zinc finger protein 272 (Zinc finger protein 460) (Zinc|
           finger protein HZF8)
          Length = 562

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 110 TGQQPCDHIRCSKCFCQL*RLVKSFS 187
           TG++P   I+C K FC+   L++ FS
Sbjct: 443 TGEKPYVCIQCGKAFCRTTNLIRHFS 468



to top

>PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit 3 (26S|
           proteasome regulatory subunit S3) (Proteasome subunit
           p58)
          Length = 534

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 41  IQSSHTPQNATRNFLLPFL 97
           +Q   T  NATR+FLLPFL
Sbjct: 117 VQGFFTSNNATRDFLLPFL 135



to top

>AATC_YEAST (P23542) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1)|
           (Transaminase A)
          Length = 417

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = -3

Query: 151 AFGASYVVARLLSSEEMTQEWKKEV 77
           A+GA  +VA+LL + E+T++W K++
Sbjct: 300 AYGAK-IVAKLLETPELTEQWHKDM 323



to top

>KPRS_LEPIN (Q8EZN0) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 312

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 350 RMNAEMIAQVKLMEKIQLPELKKINQAK 267
           R+N+   ++V L   I +PE KKIN+ K
Sbjct: 259 RINSTQFSEVVLANTIAIPESKKINKLK 286



to top

>KPRS_LEPIC (Q72V73) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 312

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 350 RMNAEMIAQVKLMEKIQLPELKKINQAK 267
           R+N+   ++V L   I +PE KKIN+ K
Sbjct: 259 RINSTQFSEVVLANTIAIPESKKINKLK 286



to top

>PC_DROME (P26017) Polycomb group protein Pc (Protein polycomb)|
          Length = 390

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 21  HASHKITFRVLIHHKMQPETSFFHSCVISSLDSNLATTYDAP 146
           H  H  + R  I H     +SF H+  +   DSN +++ D P
Sbjct: 163 HHHHHESKRQRIDHSSSSNSSFTHNSFVPEPDSNSSSSEDQP 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,239,260
Number of Sequences: 219361
Number of extensions: 807243
Number of successful extensions: 2921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2921
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top