>emb|AL031656.10|HS232N11 Human DNA sequence from clone RP1-232N11 on chromosome 20q12-13.2
             Contains part of the PTPRT gene for protein tyrosine
             phosphatase receptor type T and a novel gene, complete
             sequence
          Length = 111641

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 233   cctccatcatttctttcctcaa 254
             ||||||||||||||||||||||
Sbjct: 71679 cctccatcatttctttcctcaa 71658

>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0011J22 map R10571S, complete sequence
          Length = 154441

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 29    ccacaaaataacattcagagt 49
             |||||||||||||||||||||
Sbjct: 85791 ccacaaaataacattcagagt 85811

>gb|AC125118.5| Mus musculus BAC clone RP24-264B17 from chromosome 1, complete sequence
          Length = 177149

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    cagaaacttccttcttccatt 93
             |||||||||||||||||||||
Sbjct: 57286 cagaaacttccttcttccatt 57306

>emb|BX537106.6| Zebrafish DNA sequence from clone DKEY-98P3 in linkage group 20 Contains
              the gene for a novel protein similar to vertebrate
              dermatopontin (DPT), the atp1b1a gene for ATPase, Na+/K+
              transporting, beta 1a polypeptide, the gene for a novel
              protein containing a homocysteine S-methyltransferase
              domain, the bivm gene for basic, immunoglobulin-like
              variable motif containing, the 5' end of the gene for a
              novel zinc finger protein (wu:fc06h02), the ndpkz4 gene for
              nucleoside diphosphate kinase-Z4 and the gene for a novel
              protein containing an inosine-uridine preferring nucleoside
              hydrolase doamin, complete sequence
          Length = 162005

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     atgcatcccacaaaataacat 42
              |||||||||||||||||||||
Sbjct: 115020 atgcatcccacaaaataacat 115040

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 29      ccacaaaataacattcagagt 49
               |||||||||||||||||||||
Sbjct: 3229194 ccacaaaataacattcagagt 3229174

>emb|BX005104.7| Zebrafish DNA sequence from clone DKEY-191D13 in linkage group 6,
              complete sequence
          Length = 152217

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     atgcatcccacaaaataacat 42
              |||||||||||||||||||||
Sbjct: 144255 atgcatcccacaaaataacat 144275

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 29      ccacaaaataacattcagagt 49
               |||||||||||||||||||||
Sbjct: 3237899 ccacaaaataacattcagagt 3237879

>emb|AL928701.7| Zebrafish DNA sequence from clone CH211-201H21, complete sequence
          Length = 188745

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atgcatcccacaaaataacat 42
             |||||||||||||||||||||
Sbjct: 25972 atgcatcccacaaaataacat 25992

>emb|AL808141.8| Zebrafish DNA sequence from clone CH211-260N19, complete sequence
          Length = 147111

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atgcatcccacaaaataacat 42
             |||||||||||||||||||||
Sbjct: 17594 atgcatcccacaaaataacat 17614

>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete
             sequence
          Length = 145507

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   ttggttgatctttttcaact 292
             ||||||||||||||||||||
Sbjct: 89309 ttggttgatctttttcaact 89290

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 273      ttggttgatctttttcaact 292
                ||||||||||||||||||||
Sbjct: 32437181 ttggttgatctttttcaact 32437162



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 267     cttggcttggttgatctttttcaactcg 294
               |||||||||||||||| || ||||||||
Sbjct: 9025795 cttggcttggttgatcattgtcaactcg 9025768

>gb|AC125400.4| Mus musculus BAC clone RP24-380E10 from chromosome 10, complete sequence
          Length = 154681

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    caaacctccatcatttcttt 248
              ||||||||||||||||||||
Sbjct: 132599 caaacctccatcatttcttt 132580

>gb|AC123943.4| Mus musculus BAC clone RP23-480G20 from chromosome 12, complete
             sequence
          Length = 171251

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   caaacctccatcatttcttt 248
             ||||||||||||||||||||
Sbjct: 52696 caaacctccatcatttcttt 52715

>ref|XM_758556.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
            (TP04_0014) partial mRNA
          Length = 1740

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  aatcttctccatcagcttca 322
            ||||||||||||||||||||
Sbjct: 1498 aatcttctccatcagcttca 1479

>emb|AL390866.14| Human DNA sequence from clone RP11-218D6 on chromosome 10 Contains the 5'
              end of the gene for a novel protein
              (FLJ10817)(DKFZP434P1735), a ribosomal protein L36a-like
              (RPL36AL)(RPL36A) pseudogene, a mitochondrial ribosomal
              protein S21 (MRPS21)(MDS016, RPMS21, MRP-S21) pseudogene, a
              novel gene, the 3' end of the gene for a novel protein
              (FLJ32798) and a CpG island, complete sequence
          Length = 206198

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    catcatttctttcctcaacc 256
              ||||||||||||||||||||
Sbjct: 166063 catcatttctttcctcaacc 166044

>gb|AY043452.1| Helicobacter pylori adhesin-binding fucosylated histo-blood group
           antigen (babB) gene, babB-AD4 allele, partial cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 ggcttggttgatctttttca 289
           ||||||||||||||||||||
Sbjct: 537 ggcttggttgatctttttca 518

>gb|AC104590.4| Homo sapiens chromosome 15, clone RP11-643M14, complete sequence
          Length = 191212

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    aaaatgcaaccagaaacttc 82
             ||||||||||||||||||||
Sbjct: 99659 aaaatgcaaccagaaacttc 99678

>tpg|BK002895.1| TPA: TPA_inf: Drosophila melanogaster HDC16125 (HDC16125) gene,
            complete cds
          Length = 3028

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  cgggtagttgaatcttctcc 312
            ||||||||||||||||||||
Sbjct: 2998 cgggtagttgaatcttctcc 2979

>gb|AC009554.14| Homo sapiens, clone RP11-16B9, complete sequence
          Length = 197639

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 63 aaaatgcaaccagaaacttc 82
          ||||||||||||||||||||
Sbjct: 68 aaaatgcaaccagaaacttc 49

>gb|AC108004.3| Homo sapiens chromosome 17, clone CTD-2348K1, complete sequence
          Length = 116762

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    attcttgtgtcatttcttca 110
             ||||||||||||||||||||
Sbjct: 60550 attcttgtgtcatttcttca 60569

>gb|AC135207.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1261C08,
             complete sequence
          Length = 99910

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 267   cttggcttggttgatctttttcaactcg 294
             |||||||||||||||| || ||||||||
Sbjct: 32831 cttggcttggttgatcattgtcaactcg 32804

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 302      gaatcttctccatcagcttc 321
                ||||||||||||||||||||
Sbjct: 19662774 gaatcttctccatcagcttc 19662793

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 273      ttggttgatctttttcaact 292
                ||||||||||||||||||||
Sbjct: 32527691 ttggttgatctttttcaact 32527672



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 267     cttggcttggttgatctttttcaactcg 294
               |||||||||||||||| || ||||||||
Sbjct: 9023628 cttggcttggttgatcattgtcaactcg 9023601

>gb|AC007854.4|AC007854 Drosophila melanogaster, chromosome 3R, region 98F-98F, BAC clone
              BACR13H19, complete sequence
          Length = 155666

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    cgggtagttgaatcttctcc 312
              ||||||||||||||||||||
Sbjct: 114029 cgggtagttgaatcttctcc 114010

>gb|AC092967.5| Homo sapiens 3 BAC RP11-521A24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179848

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 233   cctccatcatttctttcctcaacc 256
             ||||||||||||||| ||||||||
Sbjct: 68978 cctccatcatttcttgcctcaacc 69001

>gb|AC155288.3| Mus musculus 6 BAC RP24-176C17 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 168486

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   atcatttctttcctcaacct 257
             ||||||||||||||||||||
Sbjct: 62715 atcatttctttcctcaacct 62734

>gb|AE003767.2| Drosophila melanogaster chromosome 3R, section 105 of 118 of the complete
              sequence
          Length = 231562

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    cgggtagttgaatcttctcc 312
              ||||||||||||||||||||
Sbjct: 161299 cgggtagttgaatcttctcc 161280

>gb|AC074042.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-99G18, complete
              sequence
          Length = 226048

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    tgaatcttctccatcagctt 320
              ||||||||||||||||||||
Sbjct: 100399 tgaatcttctccatcagctt 100418

>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07,
              complete sequence
          Length = 166410

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    gaatcttctccatcagcttc 321
              ||||||||||||||||||||
Sbjct: 113500 gaatcttctccatcagcttc 113519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,812,860
Number of Sequences: 3902068
Number of extensions: 3812860
Number of successful extensions: 82438
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82246
Number of HSP's gapped (non-prelim): 192
length of query: 351
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 329
effective length of database: 17,147,199,772
effective search space: 5641428724988
effective search space used: 5641428724988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)