ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl56g01 |
|---|---|
| Clone Library Name | barley_pub |
>YG29_YEAST (P53242) Hypothetical 34.0 kDa protein in VHT1-ROM1 intergenic| region Length = 292 Score = 32.0 bits (71), Expect = 0.39 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -3 Query: 330 GSISGFYYDPNSSPFQKLELKCTN 259 GS+ G+YY P FQKLEL TN Sbjct: 255 GSVEGYYYHPACELFQKLELVPTN 278
>AROE_BUCAI (Q44607) Shikimate dehydrogenase (EC 1.1.1.25)| Length = 273 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Frame = +3 Query: 36 IIVWSCNIHWHNRTYITSQLFLRNIRNYG----FNTHSVFVHIGKRRKFPCVISATS 194 ++ + C+I NRT + ++ + YG FNT+S+ V + F +I+ATS Sbjct: 143 LLSYGCSICIFNRTVLNAEKLVLQFHKYGNINVFNTNSLHV-----KSFDLIINATS 194
>OGT_SULSO (Q97VW7) Methylated-DNA--protein-cysteine methyltransferase (EC| 2.1.1.63) (6-O-methylguanine-DNA methyltransferase) (MGMT) (O-6-methylguanine-DNA-alkyltransferase) Length = 151 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 65 PVNVARPNNYVTYPFAISVF 6 P+N+ P N TYPF +SVF Sbjct: 57 PINLREPINLKTYPFRLSVF 76
>UL06_EBV (P03213) Virion protein BBRF1| Length = 613 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +3 Query: 78 YITSQLFLRNIRNYGFNTHSVFVHIGKRRKFPCVISATSINSVMH 212 Y+ Q N+RN G + VF H+ KR IS + + V+H Sbjct: 40 YVQGQTIYANLRNPGVFSRQVFTHLFKR-----AISHCTYDDVLH 79
>VID24_YEAST (P38263) Vacuolar import and degradation protein VID24| (Glucose-induced degradation protein 4) Length = 362 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -3 Query: 330 GSISGFYYDPNSSPFQKLEL 271 G+I GFYY ++ FQ+LEL Sbjct: 325 GNIQGFYYHQDAEKFQQLEL 344
>SYL1_SULTO (Q974N4) Leucyl-tRNA synthetase 1 (EC 6.1.1.4) (Leucine--tRNA| ligase 1) (LeuRS 1) Length = 945 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +3 Query: 66 HNRTYITSQLFLRNIRNYGFN 128 H RTYIT+ ++ R +R G+N Sbjct: 52 HGRTYITADIYARYLRMKGYN 72
>SYL1_SULAC (Q4JBP0) Leucyl-tRNA synthetase 1 (EC 6.1.1.4) (Leucine--tRNA| ligase 1) (LeuRS 1) Length = 942 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +3 Query: 66 HNRTYITSQLFLRNIRNYGFN 128 H RTYIT+ ++ R +R G+N Sbjct: 49 HGRTYITADIYARYLRMKGYN 69
>CADH4_HUMAN (P55283) Cadherin-4 precursor (Retinal-cadherin) (R-cadherin)| (R-CAD) Length = 916 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 241 EPRLFLVGALQFKLLKWTAVWVVIKATNGSIAT 339 +P F+ A+++ L A W+ I ATNG I T Sbjct: 533 DPDRFMQQAVRYSKLSDPASWLHINATNGQITT 565
>YEPA_SCHPO (O14470) Putative chromatin regulator protein C23H3.10| Length = 503 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +3 Query: 63 WHNRTYITSQLFLRNIRNYGFNTHSVFVHIGKRRKFPCVI 182 W N+ + L L I YG + + + +H+G R K C+I Sbjct: 250 WSNQETL---LLLEAIETYGDDWNQIALHVGSRTKEQCLI 286
>GLI2_HUMAN (P10070) Zinc finger protein GLI2 (Tax helper protein)| Length = 1258 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +3 Query: 15 NCKRISYIIVWSCNIHWHNRT--YITSQLFLRNIRNYGFNTHSVFVHIGKRRKFPC 176 +CK+ + ++++ N HW + T Y T + + +I N + G++++F C Sbjct: 97 DCKQEAEVVIYETNCHWEDCTKEYDTQEQLVHHINNEHIH--------GEKKEFVC 144
>YCF2_PHYPA (P61243) Protein ycf2| Length = 2259 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +3 Query: 33 YIIVWSCNIHWHNRTYITSQLFLRNIRNYGFNTHS 137 Y++ W N+ YIT+ F N +N F+ +S Sbjct: 516 YLLYWIKNLFREEEKYITNPNFFENKKNLNFSNNS 550
>SYL1_SULSO (P58176) Leucyl-tRNA synthetase 1 (EC 6.1.1.4) (Leucine--tRNA| ligase 1) (LeuRS 1) Length = 934 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +3 Query: 66 HNRTYITSQLFLRNIRNYGFN 128 H RTYIT+ ++ R +R G+N Sbjct: 51 HGRTYITADIYARYLRMKGYN 71
>MLTA_BUCAP (Q8K9A7) Membrane-bound lytic murein transglycosylase A homolog (EC| 3.2.1.-) (Murein hydrolase A) Length = 366 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Frame = +3 Query: 114 NYGFNTHSVFVHIGKRRKFPCVISATSINSVMHVTAAHIKKR*TQI--VSRWCTSIQASE 287 +YG N +F K+ +P TSI ++ + I+K+ + + WCT E Sbjct: 199 DYGDNKPLIFFGYAKKNNWPY----TSIGQIL-IKNGDIQKKNISMNTIKNWCTHHTQKE 253 Query: 288 MDCCLGRNKSH*WIHRYKK 344 + L +NKS + K+ Sbjct: 254 IQNLLEKNKSFVFFQETKR 272
>CADH4_CHICK (P24503) Cadherin-4 precursor (Retinal-cadherin) (R-cadherin)| (R-CAD) Length = 913 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +1 Query: 241 EPRLFLVGALQFKLLKWTAVWVVIKATNGSIAT 339 +P F+ A+++ L A W+ I ATNG I T Sbjct: 530 DPDRFMQQAVRYSKLSDPANWLNINATNGQITT 562
>PPOB_SOLTU (Q06355) Catechol oxidase B, chloroplast precursor (EC 1.10.3.1)| (Polyphenol oxidase) (PPO) (Fragment) Length = 588 Score = 27.3 bits (59), Expect = 9.5 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -3 Query: 315 FYYDPNSSPFQKLELKCTNEKQSGFTF 235 F+YD N +P++ C + K+ GF++ Sbjct: 395 FFYDENRNPYRVKVRDCLDSKKMGFSY 421 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,015,115 Number of Sequences: 219361 Number of extensions: 892223 Number of successful extensions: 1958 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1930 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1958 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
