ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550104.1| Oryza sativa (japonica cultivar-group), mRNA 101 1e-18
2dbj|AK059740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 1e-18
3gb|AY109915.1| Zea mays CL9762_1 mRNA sequence 96 9e-17
4ref|XM_469295.1| Oryza sativa (japonica cultivar-group), mRNA 94 4e-16
5dbj|AK059913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
6gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genom... 54 3e-04
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 3e-04
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
10emb|BX819074.1|CNS0A9TW Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
11emb|BX821899.1|CNS0A94C Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
12emb|BX821795.1|CNS0A95O Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
13emb|BX821084.1|CNS0A9B8 Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
14gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 geno... 54 3e-04
15dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
16gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 42 1.2
17gb|AY501946.1| Campylobacter jejuni strain TGH 9011 contig077 Tg... 42 1.2
18dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.2
19gb|AE002133.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 40 4.6
20gb|AC133214.3| Mus musculus BAC clone RP23-72A15 from chromosome... 40 4.6
21gb|AC161054.3| Mus musculus BAC clone RP23-381H23 from chromosom... 40 4.6
22gb|AC102116.8| Mus musculus chromosome 3, clone RP23-149A10, com... 40 4.6
23emb|AL357513.8| Human DNA sequence from clone RP11-100A16 on chr... 40 4.6
24gb|AC103727.2| Homo sapiens chromosome 18, clone RP11-189C5, com... 40 4.6
25gb|AC091143.6| Homo sapiens chromosome 18, clone CTD-3056C12, co... 40 4.6
26gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, com... 40 4.6
27gb|AF247851.1|AF247851 Caenorhabditis remanei ribosomal protein ... 40 4.6
28gb|AC131731.4| Mus musculus BAC clone RP23-117K10 from 3, comple... 40 4.6
29gb|AC132593.3| Mus musculus BAC clone RP24-218L22 from 3, comple... 40 4.6 
>ref|XM_550104.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1056

 Score =  101 bits (51), Expect = 1e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 253 tttctcgttggtgcacttcaattcaagcttctgaaatggactgctgtttgggtcgtaata 312
           |||||| ||||| ||||||| ||||||||||||||| |||||||||||||| || |||||
Sbjct: 709 tttctcattggtacacttcagttcaagcttctgaaacggactgctgtttggatcataata 650

                                              
Query: 313 aaagccactaatggatccatcgctacaagaaaagc 347
           | | || |||||||| ||||||||||| |||||||
Sbjct: 649 atacccgctaatggaaccatcgctacatgaaaagc 615
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>dbj|AK059740.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F03, full
           insert sequence
          Length = 1056

 Score =  101 bits (51), Expect = 1e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 253 tttctcgttggtgcacttcaattcaagcttctgaaatggactgctgtttgggtcgtaata 312
           |||||| ||||| ||||||| ||||||||||||||| |||||||||||||| || |||||
Sbjct: 709 tttctcattggtacacttcagttcaagcttctgaaacggactgctgtttggatcataata 650

                                              
Query: 313 aaagccactaatggatccatcgctacaagaaaagc 347
           | | || |||||||| ||||||||||| |||||||
Sbjct: 649 atacccgctaatggaaccatcgctacatgaaaagc 615
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>gb|AY109915.1| Zea mays CL9762_1 mRNA sequence
          Length = 1139

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                       
Query: 260 ttggtgcacttcaattcaagcttctgaaatggactgctgtttgggtcgtaataaaagcca 319
           ||||| |||||||  || |||||||||||||||||||| ||||| || |||||||| |||
Sbjct: 307 ttggtacacttcagctcgagcttctgaaatggactgctatttggatcataataaaatcca 366

                                       
Query: 320 ctaatggatccatcgctacaagaaaagc 347
            ||||||| |||||||||||||||||||
Sbjct: 367 ttaatggagccatcgctacaagaaaagc 394
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>ref|XM_469295.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1330

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                       
Query: 253 tttctcgttggtgcacttcaattcaagcttctgaaatggactgctgtttgggtcgtaata 312
           |||||| ||||| ||||||| ||||||||||||||| |||||||||||||| || |||||
Sbjct: 991 tttctcattggtacacttcagttcaagcttctgaaacggactgctgtttggatcataata 932

                                              
Query: 313 aaagccactaatggatccatcgctacaagaaaagc 347
           | | || |||||||| || |||||||| |||||||
Sbjct: 931 atacccgctaatggaaccgtcgctacatgaaaagc 897
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>dbj|AK059913.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D10, full
            insert sequence
          Length = 1238

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 253  tttctcgttggtgcacttcaattcaagcttctgaaatggactgctgtttgggtcgtaata 312
            |||||| ||||| ||||||| ||||||||||||||| |||||||||||||| || |||||
Sbjct: 1005 tttctcattggtacacttcagttcaagcttctgaaacggactgctgtttggatcataata 946

                                               
Query: 313  aaagccactaatggatccatcgctacaagaaaagc 347
            | | || |||||||| || |||||||| |||||||
Sbjct: 945  atacccgctaatggaaccgtcgctacatgaaaagc 911
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>gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genomic sequence, complete
             sequence
          Length = 55268

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 253   tttctcgttggtgcacttcaattcaagcttctgaaatggactg 295
             |||||| ||||| ||||||| ||||||||||||||| ||||||
Sbjct: 14429 tttctcattggtacacttcagttcaagcttctgaaacggactg 14471



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                    
Query: 293   ctgctgtttgggtcgtaataaaagccactaatggatccatcgctacaagaaaagc 347
             ||||||||||| || |||||| | || |||||||| || |||||||| |||||||
Sbjct: 14569 ctgctgtttggatcataataatacccgctaatggaaccgtcgctacatgaaaagc 14623
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 253      tttctcgttggtgcacttcaattcaagcttctgaaatggactg 295
                |||||| ||||| ||||||| ||||||||||||||| ||||||
Sbjct: 26594711 tttctcattggtacacttcagttcaagcttctgaaacggactg 26594753



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 293      ctgctgtttgggtcgtaataaaagccactaatggatccatcgctacaagaaaagc 347
                ||||||||||| || |||||| | || |||||||| || |||||||| |||||||
Sbjct: 26594851 ctgctgtttggatcataataatacccgctaatggaaccgtcgctacatgaaaagc 26594905
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 253      tttctcgttggtgcacttcaattcaagcttctgaaatggactg 295
                |||||| ||||| ||||||| ||||||||||||||| ||||||
Sbjct: 26686034 tttctcattggtacacttcagttcaagcttctgaaacggactg 26686076



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 293      ctgctgtttgggtcgtaataaaagccactaatggatccatcgctacaagaaaagc 347
                ||||||||||| || |||||| | || |||||||| || |||||||| |||||||
Sbjct: 26686174 ctgctgtttggatcataataatacccgctaatggaaccgtcgctacatgaaaagc 26686228
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 253     tttctcgttggtgcacttcaattcaagcttctgaaatggactg 295
               |||||| ||||| ||||||| ||||||||||||||| ||||||
Sbjct: 2387250 tttctcattggtacacttcagttcaagcttctgaaacggactg 2387208



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                      
Query: 293     ctgctgtttgggtcgtaataaaagccactaatggatccatcgctacaagaaaagc 347
               ||||||||||| || |||||| | || |||||||| ||||||||||| |||||||
Sbjct: 2387110 ctgctgtttggatcataataatacccgctaatggaaccatcgctacatgaaaagc 2387056
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>emb|BX819074.1|CNS0A9TW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB43ZD02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 865

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 278 agcttctgaaatggactgctgtttgggtcgtaataaaagccactaatggatccatcgct 336
           ||||||||||| |||||||||||||| || ||||| || || || ||||| ||||||||
Sbjct: 589 agcttctgaaacggactgctgtttggatcataatagaaaccgctgatggaaccatcgct 531
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>emb|BX821899.1|CNS0A94C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL82ZG04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 877

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 278 agcttctgaaatggactgctgtttgggtcgtaataaaagccactaatggatccatcgct 336
           ||||||||||| |||||||||||||| || ||||| || || || ||||| ||||||||
Sbjct: 601 agcttctgaaacggactgctgtttggatcataatagaaaccgctgatggaaccatcgct 543
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>emb|BX821795.1|CNS0A95O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL74ZG10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 905

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 278 agcttctgaaatggactgctgtttgggtcgtaataaaagccactaatggatccatcgct 336
           ||||||||||| |||||||||||||| || ||||| || || || ||||| ||||||||
Sbjct: 629 agcttctgaaacggactgctgtttggatcataatagaaaccgctgatggaaccatcgct 571
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>emb|BX821084.1|CNS0A9B8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL13ZD08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 792

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 278 agcttctgaaatggactgctgtttgggtcgtaataaaagccactaatggatccatcgct 336
           ||||||||||| |||||||||||||| || ||||| || || || ||||| ||||||||
Sbjct: 591 agcttctgaaacggactgctgtttggatcataatagaaaccgctgatggaaccatcgct 533
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>gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 genomic sequence, complete
              sequence
          Length = 136712

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 253    tttctcgttggtgcacttcaattcaagcttctgaaatggactg 295
              |||||| ||||| ||||||| ||||||||||||||| ||||||
Sbjct: 117525 tttctcattggtacacttcagttcaagcttctgaaacggactg 117567



 Score = 46.1 bits (23), Expect = 0.075
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                     
Query: 293    ctgctgtttgggtcgtaataaaagccactaatggatccatcgctacaagaaaagc 347
              ||||||||||| || |||||| | || |||||||| || |||||||| |||||||
Sbjct: 117665 ctgctgtttggatcataataatacccgctaatggaaccgtcgctacatgaaaagc 117719
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>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0024G09
          Length = 175565

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 253    tttctcgttggtgcacttcaattcaagcttctgaaatggactg 295
              |||||| ||||| ||||||| ||||||||||||||| ||||||
Sbjct: 116300 tttctcattggtacacttcagttcaagcttctgaaacggactg 116258



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 293    ctgctgtttgggtcgtaataaaagccactaatggatccatcgctacaagaaaagc 347
              ||||||||||| || |||||| | || |||||||| ||||||||||| |||||||
Sbjct: 116160 ctgctgtttggatcataataatacccgctaatggaaccatcgctacatgaaaagc 116106
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>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 16      attgcaaaaggataagttaca 36
               |||||||||||||||||||||
Sbjct: 1053944 attgcaaaaggataagttaca 1053924
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>gb|AY501946.1| Campylobacter jejuni strain TGH 9011 contig077 Tgh059 gene,
          partial cds
          Length = 1025

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 16 attgcaaaaggataagttaca 36
          |||||||||||||||||||||
Sbjct: 7  attgcaaaaggataagttaca 27
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>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144,
             complete sequence
          Length = 135217

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    acataattgtttggtcttgca 54
             |||||||||||||||||||||
Sbjct: 51773 acataattgtttggtcttgca 51753
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>gb|AE002133.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 34 of 59 of the
            complete genome
          Length = 11147

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    tactgaaattgcaaaaggat 28
            ||||||||||||||||||||
Sbjct: 5360 tactgaaattgcaaaaggat 5341
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>gb|AC133214.3| Mus musculus BAC clone RP23-72A15 from chromosome 10, complete sequence
          Length = 157067

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    gaaattgcaaaaggataagt 32
             ||||||||||||||||||||
Sbjct: 38058 gaaattgcaaaaggataagt 38077
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>gb|AC161054.3| Mus musculus BAC clone RP23-381H23 from chromosome 10, complete sequence
          Length = 202932

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     gaaattgcaaaaggataagt 32
              ||||||||||||||||||||
Sbjct: 134763 gaaattgcaaaaggataagt 134782
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>gb|AC102116.8| Mus musculus chromosome 3, clone RP23-149A10, complete sequence
          Length = 204383

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    gttacataattgtttggtct 50
             ||||||||||||||||||||
Sbjct: 75471 gttacataattgtttggtct 75452
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>emb|AL357513.8| Human DNA sequence from clone RP11-100A16 on chromosome 6 Contains a
             cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1)
             pseudogene, complete sequence
          Length = 177645

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaaatactgaaattgcaaaa 24
             ||||||||||||||||||||
Sbjct: 64337 aaaatactgaaattgcaaaa 64318
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>gb|AC103727.2| Homo sapiens chromosome 18, clone RP11-189C5, complete sequence
          Length = 149383

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    cccaaaatactgaaattgca 21
            ||||||||||||||||||||
Sbjct: 6096 cccaaaatactgaaattgca 6115
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>gb|AC091143.6| Homo sapiens chromosome 18, clone CTD-3056C12, complete sequence
          Length = 104854

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     cccaaaatactgaaattgca 21
             ||||||||||||||||||||
Sbjct: 27042 cccaaaatactgaaattgca 27023
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>gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, complete sequence
          Length = 196840

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     taacatctcaactattttta 101
              ||||||||||||||||||||
Sbjct: 131615 taacatctcaactattttta 131596
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>gb|AF247851.1|AF247851 Caenorhabditis remanei ribosomal protein L12 (rpl-12) gene,
          partial cds, alternatively spliced
          Length = 878

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 4  caaaatactgaaattgcaaa 23
          ||||||||||||||||||||
Sbjct: 78 caaaatactgaaattgcaaa 97
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>gb|AC131731.4| Mus musculus BAC clone RP23-117K10 from 3, complete sequence
          Length = 200232

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     gttacataattgtttggtct 50
              ||||||||||||||||||||
Sbjct: 166597 gttacataattgtttggtct 166578
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>gb|AC132593.3| Mus musculus BAC clone RP24-218L22 from 3, complete sequence
          Length = 175976

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     gttacataattgtttggtct 50
              ||||||||||||||||||||
Sbjct: 106396 gttacataattgtttggtct 106415


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,996,802
Number of Sequences: 3902068
Number of extensions: 2996802
Number of successful extensions: 55594
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55491
Number of HSP's gapped (non-prelim): 103
length of query: 347
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 325
effective length of database: 17,147,199,772
effective search space: 5572839925900
effective search space used: 5572839925900
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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