ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl56f12 |
|---|---|
| Clone Library Name | barley_pub |
>BMP2K_MOUSE (Q91Z96) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)| Length = 1138 Score = 33.5 bits (75), Expect = 0.13 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%) Frame = +3 Query: 111 GSQRSQQVQPANHSSNPYMLQQFSSRDKWTRLE------HRHHNTTDSLRSTARPPRRQG 272 GSQ+ Q+V+ + LQ+ SSR + T+ + RHH T S + T +PP R Sbjct: 944 GSQQQQKVKQRS-------LQKLSSRQRRTKQDVSKSNGKRHHGTPTSAKKTLKPPYRTP 996 Query: 273 SQRRK 287 + R+ Sbjct: 997 ERARR 1001
>XYNA_RUMFL (P29126) Bifunctional endo-1,4-beta-xylanase xylA precursor (EC| 3.2.1.8) Length = 954 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 25 WRTDNNNCQWGR*QQWNNIPVPVSSSTTKDLNDHNKFN 138 W +NN QW + QWNN + T D N+ N +N Sbjct: 478 WDNNNNWNQWDQNNQWNN----QQQNNTWDWNNQNNWN 511
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 117 QRSQQVQPANHSSNPYMLQQFSSRDKWTRLEHRHHNTTDSLRSTARPPRRQGSQRRKPLP 296 + ++ +P + S + + S TR RH + RS + PRR+ S RR+P P Sbjct: 269 KEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRS-----RSRSYSPRRRPSPRRRPSP 323 Query: 297 VLRSARR 317 R+ R Sbjct: 324 RRRTPPR 330
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 117 QRSQQVQPANHSSNPYMLQQFSSRDKWTRLEHRHHNTTDSLRSTARPPRRQGSQRRKPLP 296 + ++ +P + S + + S TR RH + RS + PRR+ S RR+P P Sbjct: 269 KEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRS-----RSRSYSPRRRPSPRRRPSP 323 Query: 297 VLRSARR 317 R+ R Sbjct: 324 RRRTPPR 330
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +3 Query: 117 QRSQQVQPANHSSNPYMLQQFSSRDKWTRLEHRHHNTTDSLRSTARPPRRQGSQRRKPLP 296 + ++ +P + S + + S TR RH + RS + PRR+ S RR+P P Sbjct: 267 KEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRS-----RSRSYSPRRRPSPRRRPSP 321 Query: 297 VLRSARR 317 R+ R Sbjct: 322 RRRTPPR 328
>RIN3_HUMAN (Q8TB24) Ras and Rab interactor 3 (Ras interaction/interference| protein 3) Length = 984 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/36 (47%), Positives = 17/36 (47%) Frame = +2 Query: 206 RTPPPQHNRQPPLYCSTTSPAGVPTEEALARAPVCP 313 R PPP P L SPA P ALA AP CP Sbjct: 279 RPPPPP----PVLPLQPCSPAQPPVLPALAPAPACP 310
>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)| (3-dehydrosphinganine reductase) (KDS reductase) Length = 969 Score = 28.1 bits (61), Expect = 5.5 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Frame = +3 Query: 111 GSQRSQQVQPANHSSNPYMLQQFSSRDKWTRLEHRHHNTTDSL-RSTARPPRRQGSQRRK 287 G + Q P H +P + + S+ D + N +L + AR P + +Q+R+ Sbjct: 709 GQPQQMQPSPHQHPMDPQLSK--STEDMAHESGYGQLNVESALAKRLAREPGHRLAQQRR 766 Query: 288 PLPVLRSARRW*SSREGQTAHHA 356 P VL ARR S+ E AH A Sbjct: 767 PEQVLNLARR--SNVEALFAHIA 787
>K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)| Length = 1157 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +2 Query: 185 PRQMD*TRTPPPQHN--RQPPLYCSTTSPAGVPTEE 286 P +R PPPQHN ++PP T+ G PT+E Sbjct: 1006 PELQSSSRAPPPQHNGQQEPP-----TARKGPPTQE 1036
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +2 Query: 212 PPPQHNRQPPLYCSTT-SPAGVPTEEALARAPVCPTLV 322 PPP PPL +T+ P P + A APV PT + Sbjct: 2317 PPPPPPPPPPLPPATSPKPPTYPKRKLAAAAPVAPTAI 2354
>RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif protein 5)| (Putative tumor suppressor LUCA15) (G15 protein) (NY-REN-9 antigen) Length = 815 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 203 TRTPPPQHNRQPPLYCSTTSPAGVPTEEA 289 T T ++ P LY T++P G PTEEA Sbjct: 402 TTTSAAVVSQSPQLYNQTSNPPGSPTEEA 430
>ATS18_MOUSE (Q4VC17) ADAMTS-18 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 18) (ADAM-TS 18) (ADAM-TS18) Length = 1219 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +2 Query: 215 PPQHNRQPPLYCSTTSPAGVPTEEALARAPVCPTL 319 PP+ + P CS T GV E L ++P TL Sbjct: 992 PPEWSPSPWSQCSKTCGRGVRRREVLCKSPAAETL 1026
>RIHC_ECOL6 (P0C0W2) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +2 Query: 221 QHNRQPPLYCSTTSPAGVPTEEALARAPVCPTLVKLSGRTNSA 349 +HNRQP PA + +AL RAP TLV + TN A Sbjct: 93 EHNRQP-----LGIPAFLAIRDALMRAPEPVTLVAIGPLTNIA 130
>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit 4)| (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) (Proximal sequence element-binding transcription factor alpha subunit) (PSE-binding factor alpha Length = 1469 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 212 PPPQHNRQPPLYCSTTSPAGVPTEEALARAP 304 PP NR+P C T +PA P AL+++P Sbjct: 1136 PPANMNREPEPSCRTDTPA--PPTHALSQSP 1164
>MEOX2_RAT (P39020) Homeobox protein MOX-2 (Growth arrest-specific homeobox)| Length = 303 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +2 Query: 215 PPQHNRQPPLYCSTTSPAGVPTEEALARAP 304 PP+ PP+ CS +S G T A AP Sbjct: 116 PPELGSSPPVLCSNSSSLGSSTPTGAACAP 145
>MEOX2_MOUSE (P32443) Homeobox protein MOX-2 (Mesenchyme homeobox 2)| Length = 303 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +2 Query: 215 PPQHNRQPPLYCSTTSPAGVPTEEALARAP 304 PP+ PP+ CS +S G T A AP Sbjct: 116 PPELGSSPPVLCSNSSSLGSSTPTGAACAP 145
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = +2 Query: 212 PPPQHNRQPPLYCSTT----SPAGVPTEEALARAPVCPTLV 322 P P+H QP L +T+ S G P A ++APV P+ V Sbjct: 451 PQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASKAPVVPSPV 491
>BMP2K_HUMAN (Q9NSY1) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)| Length = 1161 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%) Frame = +3 Query: 168 LQQFSSRDKWTRLE------HRHHNTTDSLRSTARPPRRQGSQRRK 287 LQ+ SSR + T+ + RHH T S + T +P R + R+ Sbjct: 975 LQKLSSRQRRTKQDMSKSNGKRHHGTPTSTKKTLKPTYRTPERARR 1020
>TPSN_CANFA (Q5TJE4) Tapasin precursor (TPSN) (TPN) (TAP-binding protein)| Length = 449 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 209 TPPPQHNRQPPLYCSTTSPAGVPTEEALARAP 304 TPPP+ + +P LY PAG + A+ R P Sbjct: 53 TPPPRPDLEPELYLKVHDPAGT-LQAAVRRYP 83
>ATX1_PLAFA (Q04956) Probable cation-transporting ATPase 1 (EC 3.6.3.-)| Length = 1956 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +1 Query: 76 NIPVPVSSSTTKDLNDHNKFNQPTTRAILTCCSNLVPATN 195 NIP P + + ++++H K N P L CC L N Sbjct: 776 NIP-PEKNKSYNNISEHIKINYPLLFEALACCHTLSKVNN 814
>FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400| Length = 980 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +2 Query: 185 PRQMD*TRTPPPQHNRQPPLYCSTTSPAGVPTEEALARAPVCPTL 319 P+Q+D P P+ R PP +T P+ AR P PTL Sbjct: 365 PQQLDAAEMPAPRPARTPPGRPATAGNVAPPSAPRTARPP-SPTL 408
>YQI6_CAEEL (Q09279) Hypothetical protein C45G9.6| Length = 542 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 100 MKKLVLVCCSIVATCPIDNYYCLFSTGI 17 +K L+ + C A CP Y C+FST + Sbjct: 200 IKPLIPLRCESDAECPSTEYLCVFSTAM 227
>MEOX2_HUMAN (P50222) Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth| arrest-specific homeobox) Length = 304 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +2 Query: 215 PPQHNRQPPLYCSTTSPAGVPTEEALARAP 304 PP+ PP+ CS +S G T A AP Sbjct: 117 PPELGSSPPVLCSNSSSLGSSTPTGAACAP 146
>SPC97_DICDI (Q95ZG3) Spindle pole body component 97 (Spc97) (DdSpc97)| Length = 1177 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/41 (31%), Positives = 16/41 (39%) Frame = +1 Query: 127 NKFNQPTTRAILTCCSNLVPATNGLDSNXXXXXXXXXSALL 249 N FN PTT SN + AT SN + L+ Sbjct: 702 NNFNNPTTTTTTNTSSNNITATTNTSSNNTTINTTVNTTLI 742 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,706,376 Number of Sequences: 219361 Number of extensions: 860864 Number of successful extensions: 3009 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2840 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3004 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
