>emb|AM039899.1| Hordeum vulgare partial mRNA for chromomethylase 1 (cmt1 gene)
          Length = 2441

 Score =  642 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Minus

                                                                        
Query: 33   agacaataataattgtcaatggggcaggtagcaacaatggaacaacataccagtaccagt 92
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 agacaataataattgtcaatggggcaggtagcaacaatggaacaacataccagtaccagt 2360

                                                                        
Query: 93   ttcttcatctacgactaaggatctcaacgatcacaacaagttcaaccagccaaccactcg 152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 ttcttcatctacgactaaggatctcaacgatcacaacaagttcaaccagccaaccactcg 2300

                                                                        
Query: 153  agcaatccttacatgctgcagcaatttagttcccgcgacaaatggactagactcgaacac 212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 agcaatccttacatgctgcagcaatttagttcccgcgacaaatggactagactcgaacac 2240

                                                                        
Query: 213  cgccaccacaacacaacagacagcctccgctctactgctcgaccacctcgccggcagggg 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2239 cgccaccacaacacaacagacagcctccgctctactgctcgaccacctcgccggcagggg 2180

                                                                        
Query: 273  tcccaacggaggaagcccttgcccgtgctccggtctgcccgacgttggtgaagctctcgg 332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179 tcccaacggaggaagcccttgcccgtgctccggtctgcccgacgttggtgaagctctcgg 2120

                                    
Query: 333  gaaggacaaacagcgcatcatgcc 356
            ||||||||||||||||||||||||
Sbjct: 2119 gaaggacaaacagcgcatcatgcc 2096

>gb|AE006026.1| Caulobacter crescentus CB15 section 352 of 359 of the complete genome
          Length = 10339

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 247  ctgctcgaccacctcgccggcagggg 272
            ||||||||| ||||||||||||||||
Sbjct: 1292 ctgctcgacgacctcgccggcagggg 1317

>gb|AC113206.10| Mus musculus chromosome 6, clone RP23-320B19, complete sequence
          Length = 247349

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    caagttcaaccagccaaccac 149
              |||||||||||||||||||||
Sbjct: 136191 caagttcaaccagccaaccac 136171

>gb|AE012337.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 245
            of 460 of the complete genome
          Length = 11412

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 249  gctcgaccacctcgccggcag 269
            |||||||||||||||||||||
Sbjct: 6289 gctcgaccacctcgccggcag 6309

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 249     gctcgaccacctcgccggcag 269
               |||||||||||||||||||||
Sbjct: 2209529 gctcgaccacctcgccggcag 2209509

>gb|AC136767.6| Homo sapiens chromosome 11, clone RP13-25N22, complete sequence
          Length = 76050

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 328   ctcgggaaggacaaacagcgcatca 352
             ||||||||||||||||||| |||||
Sbjct: 55077 ctcgggaaggacaaacagctcatca 55053

>dbj|AP006285.2| Homo sapiens genomic DNA, chromosome 11 clone:RP13-25N22, complete
             sequence
          Length = 190267

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 328   ctcgggaaggacaaacagcgcatca 352
             ||||||||||||||||||| |||||
Sbjct: 63354 ctcgggaaggacaaacagctcatca 63330

>gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, complete sequence
          Length = 179212

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 17    aattccagtggagaacagacaata 40
             ||||||||||||||||||| ||||
Sbjct: 97148 aattccagtggagaacagataata 97125

>gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, complete sequence
          Length = 167687

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     aattccagtggagaacagacaata 40
              ||||||||||||||||||| ||||
Sbjct: 135875 aattccagtggagaacagataata 135898

>gb|AC105958.11| Mus musculus chromosome 9, clone RP24-325P4, complete sequence
          Length = 195129

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    gaagcccttgcccgtgctcc 303
              ||||||||||||||||||||
Sbjct: 168324 gaagcccttgcccgtgctcc 168305

>gb|AC011309.5| Homo sapiens BAC clone CTD-2503O24 from 7, complete sequence
          Length = 112863

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     cagtaccagtttcttcatct 102
              ||||||||||||||||||||
Sbjct: 102053 cagtaccagtttcttcatct 102072

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ctgctcgaccacctcgccgg 266
              ||||||||||||||||||||
Sbjct: 569706 ctgctcgaccacctcgccgg 569725

>gb|AC026689.6| Homo sapiens chromosome 5 clone CTB-55A14, complete sequence
          Length = 215150

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 286    agcccttgcccgtgctccggtctgcccg 313
              ||||||||||| ||||||||||||||||
Sbjct: 193918 agcccttgccc-tgctccggtctgcccg 193944

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 248     tgctcgaccacctcgccggc 267
               ||||||||||||||||||||
Sbjct: 6253855 tgctcgaccacctcgccggc 6253874

>gb|AF230869.1|AF230869 Mus musculus neurogranin (Ng) gene, complete cds
          Length = 20622

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   gaagcccttgcccgtgctcc 303
             ||||||||||||||||||||
Sbjct: 11473 gaagcccttgcccgtgctcc 11492

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ctgctcgaccacctcgccgg 266
              ||||||||||||||||||||
Sbjct: 861408 ctgctcgaccacctcgccgg 861427

>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0516A04
          Length = 145107

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   tgctcgaccacctcgccggc 267
             ||||||||||||||||||||
Sbjct: 47931 tgctcgaccacctcgccggc 47950

>gb|AC073435.26| Mus musculus strain C57BL/6J chromosome 9 clone rp23-383h20, complete
              sequence
          Length = 221953

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 284    gaagcccttgcccgtgctcc 303
              ||||||||||||||||||||
Sbjct: 149695 gaagcccttgcccgtgctcc 149714


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,689,565
Number of Sequences: 3902068
Number of extensions: 2689565
Number of successful extensions: 51148
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50998
Number of HSP's gapped (non-prelim): 151
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)