ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl56f04 |
|---|---|
| Clone Library Name | barley_pub |
>REG2_YEAST (P38232) Protein REG2| Length = 338 Score = 31.2 bits (69), Expect = 0.64 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Frame = +3 Query: 96 CQDGDNLYRTPPLQRPQSCLMRAKITYKRRRSMDYHP---------NKTREKRRKQWAVS 248 C DNL++ PP + S + A T R M Y P K + KQW ++ Sbjct: 6 CDSLDNLFQDPPEEEESSKFVEAVRTLMNRNDMGYPPAAANGTYCLKKIKSLNAKQWKIN 65 Query: 249 Q 251 + Sbjct: 66 K 66
>KR134_MACFU (Q4W7G8) Keratin-associated protein 13-4| Length = 156 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +3 Query: 27 LHFISCYRVAFVIYNIHISIPRLCQDGDNLYRT--PPLQRPQSCLMRAKITYKRRRSMDY 200 LH+ C Y+ + P +CQ G +LYR P SC K Y+RR SM Sbjct: 19 LHYPGCNP-----YSTALCSPSICQLGSSLYRNCQKTCWEPTSC---RKSCYRRRTSMLC 70 Query: 201 HPNKT 215 P +T Sbjct: 71 SPCQT 75
>KR134_MACFA (Q4W7G9) Keratin-associated protein 13-4| Length = 156 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +3 Query: 27 LHFISCYRVAFVIYNIHISIPRLCQDGDNLYRT--PPLQRPQSCLMRAKITYKRRRSMDY 200 LH+ C Y+ + P +CQ G +LYR P SC K Y+RR SM Sbjct: 19 LHYPGCNP-----YSTALCSPSICQLGSSLYRNCQKTCWEPTSC---RKSCYRRRTSMLC 70 Query: 201 HPNKT 215 P +T Sbjct: 71 SPCQT 75
>KR134_CEBAP (Q4W7G7) Keratin-associated protein 13-4| Length = 156 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Frame = +3 Query: 27 LHFISCYRVAFVIYNIHISIPRLCQDGDNLYRT--PPLQRPQSCLMRAKITYKRRRSMDY 200 LH+ C Y+ + P +CQ G +LYR P SC K Y+RR SM Sbjct: 19 LHYPGCNP-----YSTALCSPSICQLGSSLYRNCQKTCWEPTSC---RKSCYRRRTSMLC 70 Query: 201 HPNKT 215 P +T Sbjct: 71 SPCQT 75
>MENB_STAS1 (Q49WG8) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 272 Score = 28.9 bits (63), Expect = 3.2 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%) Frame = -1 Query: 335 PRPMVTLNRRHLMPA-----VICLLACKMG*WRLGN-GPLFSSFFSGF-----VRVIVHR 189 P+P+V + R + + V+C L G GP SF +G+ R++ H+ Sbjct: 106 PKPVVAMVRGYAIGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK 165 Query: 188 SAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 A + Y C +L+ G VVP+ Sbjct: 166 KAREIWYLCRQYNAQEALDMGLVNTVVPL 194
>Y1487_METJA (Q58882) Hypothetical protein MJ1487| Length = 426 Score = 28.5 bits (62), Expect = 4.2 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%) Frame = -1 Query: 251 LGNGPLFSSFFSGFVRVIVHRSAPFVCYFCSHQAGLGSLERGRTV----KVVPILAE 93 L P F + F + + R P+ CYFC G R R V K V I+AE Sbjct: 161 LNKYPPFPVKHNKFGHIEITRGCPYKCYFCQTPRIFGKKIRHRDVENIYKYVEIMAE 217
>FYV1_DROME (O96838) Putative FYVE finger-containing phosphoinositide kinase (EC| 2.7.1.68) (1-phosphatidylinositol-4-phosphate 5-kinase) (PIP5K) (PtdIns(4)P-5-kinase) Length = 1809 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = -2 Query: 361 AMSKYFLTVPDQW 323 AM +YFLTVPD+W Sbjct: 1791 AMDRYFLTVPDRW 1803
>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral| proteinase B) (CANP B) [Contains: Calpain B catalytic subunit 1; Calpain B catalytic subunit 2] Length = 925 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Frame = +2 Query: 86 P*ALPGW-GQPLPYAPSPATP 145 P A+PG G P+PYAP P +P Sbjct: 157 PSAMPGLPGMPMPYAPMPTSP 177
>MENB_STAHJ (Q4L549) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 272 Score = 28.5 bits (62), Expect = 4.2 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 11/89 (12%) Frame = -1 Query: 335 PRPMVTLNRRHLMPA-----VICLLACKMG*WRLGN-GPLFSSFFSGF-----VRVIVHR 189 P+P++ + R + + V+C L G GP SF +G+ R++ H+ Sbjct: 106 PKPVIAMVRGYAIGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK 165 Query: 188 SAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 A + Y C +L+ G VVP+ Sbjct: 166 KAREIWYLCRQYNAQEALDMGLVNTVVPL 194
>MENB_STAES (Q8CPQ4) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 272 Score = 28.5 bits (62), Expect = 4.2 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 11/89 (12%) Frame = -1 Query: 335 PRPMVTLNRRHLMPA-----VICLLACKMG*WRLGN-GPLFSSFFSGF-----VRVIVHR 189 P+P++ + R + + V+C L G GP SF +G+ R++ H+ Sbjct: 106 PKPVIAMVRGYAIGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK 165 Query: 188 SAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 A + Y C +L+ G VVP+ Sbjct: 166 KAREIWYLCRQYNAQEALDMGLVNTVVPL 194
>MENB_STAEQ (Q5HQC3) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 272 Score = 28.5 bits (62), Expect = 4.2 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 11/89 (12%) Frame = -1 Query: 335 PRPMVTLNRRHLMPA-----VICLLACKMG*WRLGN-GPLFSSFFSGF-----VRVIVHR 189 P+P++ + R + + V+C L G GP SF +G+ R++ H+ Sbjct: 106 PKPVIAMVRGYAIGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK 165 Query: 188 SAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 A + Y C +L+ G VVP+ Sbjct: 166 KAREIWYLCRQYNAQEALDMGLVNTVVPL 194
>Y819_PYRHO (O58549) Hypothetical methyltransferase PH0819 (EC 2.1.1.-)| Length = 459 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 203 VIVHRSAPFVCYFCSHQAGLGSLERGRTVKVV 108 V+ R PF C FCS G RG +V+ V Sbjct: 196 VMTSRGCPFNCVFCSSSLQFGKRWRGHSVERV 227
>SNUT3_BRARE (Q6DH74) U4/U6.U5 tri-snRNP-associated protein 3| Length = 158 Score = 28.1 bits (61), Expect = 5.5 Identities = 19/70 (27%), Positives = 36/70 (51%) Frame = +3 Query: 105 GDNLYRTPPLQRPQSCLMRAKITYKRRRSMDYHPNKTREKRRKQWAVSQSPSPHLARQ*A 284 G + RTPP + + ++ +RRR + ++ R++RR S+S SPH R Sbjct: 2 GRSRSRTPPRRERRRSRSSSRDRERRRRERERSRSRDRDRRR-----SRSRSPHRRRS-R 55 Query: 285 NNSRHQVTTI 314 + RH+ +++ Sbjct: 56 SPRRHRSSSL 65
>DXS_RHIME (Q92RJ1) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 645 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -1 Query: 152 AGLGSLERGRTVKVVPILAEPRDRYVYIIYNKCYP 48 AGLG +E T+ + I P DR ++ + ++CYP Sbjct: 56 AGLGVVEL--TIAIHKIFDTPHDRLIFDVGHQCYP 88
>MENB_BACSU (P23966) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 271 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -1 Query: 242 GPLFSSFFSGF-----VRVIVHRSAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 GP SF +G+ R++ H+ A + Y C +L+ G VVP+ Sbjct: 142 GPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL 193
>FYV1_HUMAN (Q9Y2I7) FYVE finger-containing phosphoinositide kinase (EC 2.7.1.68)| (1-phosphatidylinositol-4-phosphate 5-kinase) (Phosphatidylinositol-3-phosphate 5-kinase type III) (PIP5K) (PtdIns(4)P-5-kinase) (PIKfyve) (p235) Length = 2098 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -2 Query: 364 KAMSKYFLTVPDQWS 320 +AM KYFL VPD W+ Sbjct: 2078 EAMDKYFLMVPDHWT 2092
>RASF7_HUMAN (Q02833) Ras association domain-containing protein 7 (HRAS1-related| cluster protein 1) Length = 373 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +3 Query: 141 PQSCLMRAKITYKRRRSMDYHPNKTREKRRKQWAVSQSPSPHLAR 275 P+ CL+RA + K R ++ P KT ++ P+P L+R Sbjct: 103 PERCLIRASLPVKPRAALGCEPRKT---------LTPEPAPSLSR 138
>YAO7_SCHPO (Q10086) Putative transcriptional regulatory protein C11D3.07c| Length = 603 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +3 Query: 144 QSCLMRAKITYKRRRSMDYHPNKTREKRRKQW 239 Q+CLM ++ R++S D P K +R W Sbjct: 278 QACLMAQQLNLHRKQSTDVEPEKAESWKRIFW 309
>MENB_STAAW (Q8NXA0) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 273 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -1 Query: 242 GPLFSSFFSGF-----VRVIVHRSAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 GP SF +G+ R++ H+ A + Y C +L+ G VVP+ Sbjct: 144 GPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL 195
>MENB_STAAS (Q6GAG7) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 273 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -1 Query: 242 GPLFSSFFSGF-----VRVIVHRSAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 GP SF +G+ R++ H+ A + Y C +L+ G VVP+ Sbjct: 144 GPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL 195
>MENB_STAAR (Q6GI37) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 273 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -1 Query: 242 GPLFSSFFSGF-----VRVIVHRSAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 GP SF +G+ R++ H+ A + Y C +L+ G VVP+ Sbjct: 144 GPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL 195
>MENB_STAAN (Q7A6A9) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 273 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -1 Query: 242 GPLFSSFFSGF-----VRVIVHRSAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 GP SF +G+ R++ H+ A + Y C +L+ G VVP+ Sbjct: 144 GPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL 195
>MENB_STAAM (Q99V48) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 273 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -1 Query: 242 GPLFSSFFSGF-----VRVIVHRSAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 GP SF +G+ R++ H+ A + Y C +L+ G VVP+ Sbjct: 144 GPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL 195
>MENB_STAAC (Q5HH38) Naphthoate synthase (EC 4.1.3.36) (Dihydroxynaphthoic acid| synthetase) (DHNA synthetase) Length = 273 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -1 Query: 242 GPLFSSFFSGF-----VRVIVHRSAPFVCYFCSHQAGLGSLERGRTVKVVPI 102 GP SF +G+ R++ H+ A + Y C +L+ G VVP+ Sbjct: 144 GPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL 195
>FYV1_MOUSE (Q9Z1T6) FYVE finger-containing phosphoinositide kinase (EC 2.7.1.68)| (1-phosphatidylinositol-4-phosphate 5-kinase) (PIP5K) (PtdIns(4)P-5-kinase) (PIKfyve) (p235) Length = 2052 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -2 Query: 364 KAMSKYFLTVPDQWS 320 +AM KYFL VPD W+ Sbjct: 2032 EAMDKYFLMVPDHWT 2046
>DXS_AGRT5 (Q8UHD7) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 639 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -1 Query: 152 AGLGSLERGRTVKVVPILAEPRDRYVYIIYNKCYP 48 AGLG +E T+ + + P DR ++ + ++CYP Sbjct: 51 AGLGVVEL--TIAIHKVFNTPEDRLIFDVGHQCYP 83
>Y083_MYCPN (P75610) Hypothetical lipoprotein MPN083 precursor (R02_orf533)| Length = 533 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +2 Query: 101 GWGQPLPYAPSPATPILPDASKNNIQ 178 GWGQP PY + +L +K N+Q Sbjct: 145 GWGQPYPYQQKTQSFLLGKYTKPNVQ 170
>GOSR2_DROME (Q9VRL2) Probable Golgi SNAP receptor complex member 2| Length = 216 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +3 Query: 114 LYRTPPLQRPQSCLMRAKITYKRRRSMDYHPNKTREKRRKQWAVSQSPSPHLARQ*ANNS 293 LY+ PP QR S L ++ Y R ++R+ +S+ R AN++ Sbjct: 55 LYKVPPSQRQSSKLRVDQLKYDLRHLQTSLQTARERRQRRMQEISEREQLLNHRFTANSA 114 Query: 294 RHQVTTIQGDH 326 + + T +Q D+ Sbjct: 115 QPEETRLQLDY 125
>S12A2_SQUAC (P55013) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (NA-K-CL symporter) (NKCC) Length = 1191 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +2 Query: 98 PGWGQPLPYAPSPATPILPDASKNNIQ 178 PG GQ P P PATP+ P AS++ Q Sbjct: 20 PGAGQQEP--PPPATPLRPVASQSRFQ 44
>RFA1_XENLA (Q01588) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (p70) Length = 609 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/53 (35%), Positives = 23/53 (43%) Frame = +2 Query: 107 GQPLPYAPSPATPILPDASKNNIQKAQIDGLSP*QNQRKTKKTMGRFPVAITP 265 GQP P AP+PA+ P S K Q + P R T K G + TP Sbjct: 121 GQPQPAAPAPASAPAPAPS-----KLQNNSAPPPSMNRGTSKLFGGGSLLNTP 168
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +2 Query: 98 PGWGQPLPYAPSPATPILP 154 PG PLP P+PATP+ P Sbjct: 1586 PGPPHPLPDTPAPATPLPP 1604
>Y369_TREPA (O83384) Hypothetical protein TP0369 precursor| Length = 516 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +2 Query: 77 HIDP*ALPGWGQPLPYAPSPATPILPDASK 166 H+ P A P P P+ PSP P+ P ASK Sbjct: 121 HVAPPAPPAPTAPRPHRPSP-PPVSPSASK 149
>SYE_ARCFU (O29979) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 551 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = -1 Query: 206 RVIVHRSAPFVCYFCSHQAGLGSLERGRTVKVVPILAEPRDRYVYIIYNKCYPVT 42 + +V+ + F H G+ + RG+ + I +E R RY+Y + YP+T Sbjct: 268 KYVVYPTLDFESAIEDHLLGITHIIRGKDL----IDSERRQRYIYEYFGWIYPIT 318
>OTX1L_BRARE (Q90267) Homeobox protein Otx1l (ZOTX3)| Length = 338 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +2 Query: 95 LPGWGQPLPYAPSPATPILPD----ASKNNIQKAQIDG 196 +P P P +P PA P LPD AS + +Q+A G Sbjct: 166 VPSIWSPAPVSPVPAPPSLPDISPPASASCMQRAMSSG 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,594,202 Number of Sequences: 219361 Number of extensions: 1310481 Number of successful extensions: 3722 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3718 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
