ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl56f03 |
|---|---|
| Clone Library Name | barley_pub |
>SYA_ARATH (P36428) Alanyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.7)| (Alanine--tRNA ligase) (AlaRS) Length = 1003 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/32 (59%), Positives = 27/32 (84%) Frame = -1 Query: 370 GKNGLAQGQGSDASRVKEAMELATQIASMKLS 275 GK GLA GQG+DAS+V+ A+++A+ ASMKL+ Sbjct: 972 GKGGLASGQGTDASQVQAALDMASSFASMKLN 1003
>SYA_THETN (Q8RAH4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 878 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = -1 Query: 370 GKNGLAQGQGSDASRVKEAMELATQIASMKL 278 G+ +AQG G + S+VKEA+E A +I +L Sbjct: 846 GRAEMAQGTGKNISKVKEALEKAIEIVKGQL 876
>CAC1I_HUMAN (Q9P0X4) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (Ca(v)3.3) Length = 2223 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/65 (26%), Positives = 35/65 (53%) Frame = -3 Query: 257 SSYILSGCLMVVLTLLSQIVMREHKIIHENQLEAVSIFTLQDVV*SSQLSCNYSLVYQME 78 S ++++ CL+V+ T S+ REH+++ E + +S T+ ++ Y ++Q Sbjct: 386 SFFMINLCLVVIATQFSETKQREHRLMLEQRQRYLSSSTVASY---AEPGDCYEEIFQYV 442 Query: 77 CYI*R 63 C+I R Sbjct: 443 CHILR 447
>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit| (Voltage-gated calcium channel alpha subunit Cav3.3) (CaVT.3) Length = 2201 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/65 (26%), Positives = 35/65 (53%) Frame = -3 Query: 257 SSYILSGCLMVVLTLLSQIVMREHKIIHENQLEAVSIFTLQDVV*SSQLSCNYSLVYQME 78 S ++++ CL+V+ T S+ REH+++ E + +S T+ ++ Y ++Q Sbjct: 384 SFFMINLCLVVIATQFSETKQREHRLMLEQRQRYLSSSTVASY---AEPGDCYEEIFQYV 440 Query: 77 CYI*R 63 C+I R Sbjct: 441 CHILR 445
>K0286_MOUSE (Q6ZQE4) Protein KIAA0286| Length = 437 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/61 (22%), Positives = 28/61 (45%) Frame = -3 Query: 362 WSCPGPGK*CFSGQGGNGACYPDSFDEAELIC*DWSSYILSGCLMVVLTLLSQIVMREHK 183 WS GPG C+ GG GA W +++GC++ ++ ++++E + Sbjct: 10 WSAVGPGPRCWGAGGGGGA--------------TWLLLVVAGCVVCGSADVNVVMLQESQ 55 Query: 182 I 180 + Sbjct: 56 V 56
>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)| Length = 2570 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +2 Query: 233 SSHLICMKTSLN-KSAQLHRSYLGSKLHCLLDPRSITSLALGK 358 S H C+ T LN + + H Y+G L CL + LG+ Sbjct: 2145 SEHANCLSTGLNTRRCECHAGYVGDGLQCLEESEPPVDRCLGQ 2187
>SYA_PSEAE (Q9I553) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 874 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = -1 Query: 370 GKNGLAQGQGSDASRVKEAMELATQIASMKLS*FVETGL 254 G+ +AQG G+DA+++ EA+ LA + FVE GL Sbjct: 844 GRPDMAQGGGTDAAKLDEALALAQR--------FVEQGL 874
>KHSE_BACSU (P04948) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 309 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = -1 Query: 358 LAQGQGSDASRVKEAMELATQIASMKLS 275 LA+G GS A+ + A+ELA ++ +KLS Sbjct: 92 LARGLGSSAAAIVAAIELADELCGLKLS 119
>HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)| (Indole-3-acetamide hydrolase) Length = 462 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = +3 Query: 255 RPVSTNQLSFIEAIWVASSIASLTREASLP 344 R ++TNQ++F+EA ++A LTR+ SLP Sbjct: 265 RRLATNQMTFVEA--DIPNVAELTRKVSLP 292
>POLG_HCVEU (O39927) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3017 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/20 (50%), Positives = 17/20 (85%) Frame = -2 Query: 102 LQFGLSNGVLYLTNECNNST 43 L +G S+G+ +LTN+C+NS+ Sbjct: 191 LTYGNSSGLYHLTNDCSNSS 210
>SYA_BIFLO (Q8G5W9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 893 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 370 GKNGLAQGQGSDASRVKEAME 308 GK AQG G DAS++ EA+E Sbjct: 864 GKPDFAQGGGVDASKIDEALE 884
>SYA_PONPY (Q5RC02) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 968 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -1 Query: 370 GKNGLAQGQGSDASRVKEAMELATQIASMKL 278 GK+ AQ G + ++EA++LAT A ++L Sbjct: 933 GKDVSAQATGKNVGCLQEALQLATSFAQLRL 963
>SYA_MOUSE (Q8BGQ7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 968 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -1 Query: 370 GKNGLAQGQGSDASRVKEAMELATQIASMKL 278 GK+ AQ G + ++EA++LAT A ++L Sbjct: 933 GKDMSAQATGKNVGCLQEALQLATSFAQLRL 963
>SYA_HUMAN (P49588) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) (NY-REN-42 antigen) Length = 968 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -1 Query: 370 GKNGLAQGQGSDASRVKEAMELATQIASMKL 278 GK+ AQ G + ++EA++LAT A ++L Sbjct: 933 GKDVSAQATGKNVGCLQEALQLATSFAQLRL 963 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,694,486 Number of Sequences: 219361 Number of extensions: 998859 Number of successful extensions: 2064 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2031 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2063 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
