ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl56f02 |
|---|---|
| Clone Library Name | barley_pub |
>CEAM1_RAT (P16573) Carcinoembryonic antigen-related cell adhesion molecule 1| precursor (Cell-CAM 105) (C-CAM 105) (Ecto-ATPase) (ATP-dependenttaurocolate-carrier protein) (GP110) (pp120) Length = 519 Score = 33.1 bits (74), Expect = 0.18 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%) Frame = +1 Query: 31 TLNRIDQTYMYYYHCHSRNR*TQDTAGSWMVNTDTTNNATYIHK---YLHQGSDHQLSIQ 201 TL + +T YY C +RN T + + + ++ +A I YLHQGS+ LS Sbjct: 201 TLLNVRRTDKGYYECEARNPATFNRSDPFNLDVIYGPDAPVISPPDIYLHQGSNLNLSCH 260 Query: 202 ARDKPWPWIFLCQRANQPTSLHFLVVTTVT 291 A P F TS L ++ +T Sbjct: 261 ADSNPPAQYFWLINEKLQTSSQELFISNIT 290
>CPSE_STRA5 (Q9AFI0) Galactosyl transferase cpsE (EC 2.7.8.-)| Length = 449 Score = 30.8 bits (68), Expect = 0.87 Identities = 16/56 (28%), Positives = 31/56 (55%) Frame = +1 Query: 4 FCTTISINHTLNRIDQTYMYYYHCHSRNR*TQDTAGSWMVNTDTTNNATYIHKYLH 171 F T I++N L + +++ YY +S + ++DT + N D+ + T+ +KY H Sbjct: 89 FFTFIAMNSILLYLLNSFLKYYRKYSYAKFSRDTKVVLITNKDSLSKMTFRNKYDH 144
>CPSE_STRA3 (Q04664) Galactosyl transferase cpsE (EC 2.7.8.-)| Length = 449 Score = 30.8 bits (68), Expect = 0.87 Identities = 16/56 (28%), Positives = 31/56 (55%) Frame = +1 Query: 4 FCTTISINHTLNRIDQTYMYYYHCHSRNR*TQDTAGSWMVNTDTTNNATYIHKYLH 171 F T I++N L + +++ YY +S + ++DT + N D+ + T+ +KY H Sbjct: 89 FFTFIAMNSILLYLLNSFLKYYRKYSYAKFSRDTKVVLITNKDSLSKMTFRNKYDH 144
>CP51_MYCVN (Q5IZM4) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1)| (Sterol 14-alpha demethylase) (Lanosterol 14-alpha demethylase) (P450-14DM) Length = 452 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -2 Query: 305 TNPLGVTVVTTRKCRDVGWFALWQRKI 225 T+P+G+ +C DVGWF L +++ Sbjct: 25 TDPIGLMKRVREECGDVGWFQLADKQV 51
>YFAL_ECOLI (P45508) Hypothetical protein yfaL precursor| Length = 1250 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Frame = +1 Query: 94 TQDTA---GSWMVNTDTTNNATYIHKYLHQGSDHQL 192 TQD + G W+V +D TNNA+ +L QG++ L Sbjct: 54 TQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSL 89
>ITR2_YEAST (P30606) Myo-inositol transporter 2| Length = 612 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = -1 Query: 156 YVGSVISSVCINHPGTSSVLCLSIPGVTVVVVHVCLI 46 +V ++I+ CI+ G +L + +PG+TV +V +C I Sbjct: 410 FVFTLIAFFCIDKIGRRYILLIGLPGMTVALV-ICAI 445
>ATG15_ASPFU (Q4X180) Putative lipase atg15 (EC 3.1.1.3) (Autophagy-related| protein 15) Length = 650 Score = 27.7 bits (60), Expect = 7.4 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Frame = +2 Query: 62 TTTTVTPGIDRHKTLLVPGW---LIQTLLITLPTYTNIYIRDRITN*ASKQGTSLGPGSF 232 TTTT P R T PGW L ++ T T T T + T PG F Sbjct: 476 TTTTTAPTTTRTSTCKTPGWWGCLDESTTTTTTTSTT------TTTTTTTTSTCKTPGWF 529 Query: 233 SAKEQTS 253 K+ T+ Sbjct: 530 GCKDPTT 536
>DUT_EBV (P03195) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC| 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) Length = 278 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 186 PIEHPSKGQALALDLSLPKSKPADVSTFPSSNYSNTQRV 302 PI HP + LD+SLPK D++ FP S T V Sbjct: 122 PINHPQYPGDVGLDVSLPK----DLALFPHQTVSVTLTV 156
>RPC1_BPD3 (Q37906) Repressor protein CI| Length = 223 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = +1 Query: 79 SRNR*TQDTAGSWMVNTDTTNNATYIHKYLHQGSDHQLSIQAR 207 S R Q G+W++ +D + + Y + + S H+L I R Sbjct: 172 SIKRLNQQLTGAWLIRSDNPDKSAYPDEMASESSVHELPIIGR 214
>DUT_EBVA8 (Q07275) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC| 3.6.1.23) (dUTPase) (dUTP pyrophosphatase) (Fragment) Length = 275 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 186 PIEHPSKGQALALDLSLPKSKPADVSTFPSSNYSNTQRV 302 PI HP + LD+SLPK D++ FP S T V Sbjct: 122 PINHPQYPGDVGLDVSLPK----DLALFPHQTVSVTLTV 156
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 53 HTCTTTTVTPGIDRHKTLLVPGWLIQ 130 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 53 HTCTTTTVTPGIDRHKTLLVPGWLIQ 130 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>IAR1_ARATH (Q9M647) IAA-alanine resistance protein 1| Length = 338 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +3 Query: 9 HHHIHQSYIKQDRSDIHVLLPLSLPE*IDTRHCWF 113 H H H ++K+ + + + LP L E D R C F Sbjct: 53 HDHDHDHHVKKTTAKVEMKLPEELAEEEDMRLCGF 87
>DCHS_DROME (Q05733) Histidine decarboxylase (EC 4.1.1.22) (HDC)| Length = 847 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = +1 Query: 106 AGSWMVNTDTTNNATYIHKYLHQGSDHQLSIQARDKPWP----WIFLCQRANQPTSLH 267 AG+ T TTN+ + S+ Q SIQ ++ P + LC+ +N P+ H Sbjct: 574 AGNGATRTSTTNSYGHTTSAAQANSERQASIQEDNEESPEETELLSLCRTSNVPSPEH 631
>NODC_RHILV (P04340) N-acetylglucosaminyltransferase (EC 2.4.1.-) (Nodulation| protein C) Length = 424 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 44 SIRHTCTTTTVTPGIDRHKTLLVPGWLIQTLLITLPTYTNI 166 + R T V PG+DR+ TL G + LL+ L T I Sbjct: 284 TFRDTLLALPVLPGLDRYLTLDAIGQNVGLLLLALSVLTGI 324
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1479 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 53 HTCTTTTVTPGIDRHKTLLVPGWLIQ 130 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>ZCPW1_MOUSE (Q6IR42) Zinc finger CW-type PWWP domain protein 1 homolog| Length = 630 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +3 Query: 150 LHTQIFTSGIGSPIEHPSKGQALALDLSLPKSKPAD 257 +++++ TS +G P+ PSK + L LS K K D Sbjct: 167 VNSEMGTSKLGQPVTEPSKKKFNRLSLSKQKKKAED 202
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 53 HTCTTTTVTPGIDRHKTLLVPGWLIQ 130 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 53 HTCTTTTVTPGIDRHKTLLVPGWLIQ 130 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)| (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 53 HTCTTTTVTPGIDRHKTLLVPGWLIQ 130 H TTT+++ GI+ T+ GWL+Q Sbjct: 48 HQATTTSISLGIEDLLTIPSKGWLVQ 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,976,178 Number of Sequences: 219361 Number of extensions: 1123474 Number of successful extensions: 3498 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3364 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3494 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
