ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PEPM_MYTED (P56839) Phosphoenolpyruvate phosphomutase (EC 5.4.2.... 29 3.8
2ISPG_NEIMB (Q9JZ40) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 28 8.5
3ISPG_NEIMA (Q9JU34) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 28 8.5
4ISPG_NEIG1 (Q5F913) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate ... 28 8.5
5TPIS_STELP (P48497) Triosephosphate isomerase, cytosolic (EC 5.3... 28 8.5

>PEPM_MYTED (P56839) Phosphoenolpyruvate phosphomutase (EC 5.4.2.9)|
           (Phosphoenolpyruvate mutase) (PEP mutase) (PEP
           phosphomutase)
          Length = 294

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 154 GRWGRSGTEEAETNVNDSSEAVVTEVVEPSEVRTENENDP 35
           G WG   +  A+  V DS+EA  T+VVE  E  ++  + P
Sbjct: 41  GIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVP 80



to top

>ISPG_NEIMB (Q9JZ40) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 421

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 92  GFRRVVDIGLSLLGAGSTP-SPAKGDGHHLVDL 187
           G  ++ DIG+SL G G TP +P   DG   V L
Sbjct: 350 GESKLADIGISLPGTGETPVAPVYVDGERKVTL 382



to top

>ISPG_NEIMA (Q9JU34) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 421

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 92  GFRRVVDIGLSLLGAGSTP-SPAKGDGHHLVDL 187
           G  ++ DIG+SL G G TP +P   DG   V L
Sbjct: 350 GESKLADIGISLPGTGETPVAPVYVDGERKVTL 382



to top

>ISPG_NEIG1 (Q5F913) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 421

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 92  GFRRVVDIGLSLLGAGSTP-SPAKGDGHHLVDL 187
           G  ++ DIG+SL G G TP +P   DG   V L
Sbjct: 350 GESKLADIGISLPGTGETPVAPVYVDGERKVTL 382



to top

>TPIS_STELP (P48497) Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 257

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = -1

Query: 160 LGGRWGRSGTEEAETNVND-------SSEAVVTEVVEPSEVRTENEN 41
           +GG W  +GT+E+ + + D       ++  VVT VV P  V   +EN
Sbjct: 7   VGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDEN 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,974,819
Number of Sequences: 219361
Number of extensions: 517829
Number of successful extensions: 1611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top