ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z30243.1|SCCLHSP S.cereale (Halo) chloroplast mRNA for heat-... 345 3e-92
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 101 9e-19
3dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic D... 101 9e-19
4dbj|AK073817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 9e-19
5gb|AY106328.1| Zea mays PCO125641 mRNA sequence 101 9e-19
6gb|AY104129.1| Zea mays PCO085355 mRNA sequence 88 1e-14
7ref|XM_483065.1| Oryza sativa (japonica cultivar-group), mRNA 86 5e-14
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 86 5e-14
9dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic D... 86 5e-14
10dbj|AK122102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 5e-14

>emb|Z30243.1|SCCLHSP S.cereale (Halo) chloroplast mRNA for heat-shock protein
          Length = 2654

 Score =  345 bits (174), Expect = 3e-92
 Identities = 206/216 (95%), Gaps = 3/216 (1%)
 Strand = Plus / Minus

                                                                        
Query: 2    aatggatgcctacagaactaactaatctctccatgggtcattctcgttctcagtcctgac 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2468 aatggatgcctacagaactaactaatctctccatgggtcattctcgttctcagtcctgac 2409

                                                                        
Query: 62   ttcggatggctcaacaacctccgttacaacggcttcagaagagtc---gttgacattggt 118
            ||||||||||||||  ||||||| ||||||  |||||||||||||   || |||||||||
Sbjct: 2408 ttcggatggctcaatgacctccggtacaacaccttcagaagagtcaccgtcgacattggt 2349

                                                                        
Query: 119  ctcagcctcctcggtgccggatctaccccatctcccgccaagggcgatggtcatcatctc 178
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2348 ctcagcctcctcggcgccggatctaccccatctcccgccaagggcgatggtcatcatctc 2289

                                                
Query: 179  gtagatcttgccccccaactccgctggactctcagg 214
            ||||||||||||||||||||||||||||||||||||
Sbjct: 2288 gtagatcttgccccccaactccgctggactctcagg 2253



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  101 bits (51), Expect = 9e-19
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                            
Query: 144      ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
                ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 18096426 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactcagct 18096485

                           
Query: 204      ggactctcagg 214
                || || |||||
Sbjct: 18096486 gggctgtcagg 18096496



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>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0026C08
          Length = 155316

 Score =  101 bits (51), Expect = 9e-19
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                         
Query: 144   ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
             ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 89548 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactcagct 89607

                        
Query: 204   ggactctcagg 214
             || || |||||
Sbjct: 89608 gggctgtcagg 89618



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>dbj|AK073817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068G01, full
            insert sequence
          Length = 2890

 Score =  101 bits (51), Expect = 9e-19
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                        
Query: 144  ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
            ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 2458 ccccatctcccgccaagagcgatggtcatcatctcgtagatcttgccacccaactcagct 2399

                       
Query: 204  ggactctcagg 214
            || || |||||
Sbjct: 2398 gggctgtcagg 2388



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>gb|AY106328.1| Zea mays PCO125641 mRNA sequence
          Length = 1769

 Score =  101 bits (51), Expect = 9e-19
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                        
Query: 144  ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
            |||||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||||
Sbjct: 1565 ccccatctcccgccgagggccatggtcatcatctcgtagatcttgcctcccagctccgct 1506

                       
Query: 204  ggactctcagg 214
            ||||| |||||
Sbjct: 1505 ggactgtcagg 1495



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>gb|AY104129.1| Zea mays PCO085355 mRNA sequence
          Length = 1075

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                       
Query: 144 ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
           |||||||||||||| ||||| || | ||||||||| ||||||||||| ||||||||||||
Sbjct: 791 ccccatctcccgccgagggcaatcgccatcatctcatagatcttgccacccaactccgct 732

                   
Query: 204 ggactctc 211
           ||||||||
Sbjct: 731 ggactctc 724



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>ref|XM_483065.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2702

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 144  ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
            |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| 
Sbjct: 2355 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 2296

                       
Query: 204  ggactctcagg 214
            ||||| |||||
Sbjct: 2295 ggactgtcagg 2285



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                            
Query: 144      ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
                |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| 
Sbjct: 24117967 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 24118026

                           
Query: 204      ggactctcagg 214
                ||||| |||||
Sbjct: 24118027 ggactgtcagg 24118037



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>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0028A08
          Length = 150818

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 144   ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
             |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| 
Sbjct: 71453 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 71512

                        
Query: 204   ggactctcagg 214
             ||||| |||||
Sbjct: 71513 ggactgtcagg 71523



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>dbj|AK122102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K17, full
            insert sequence
          Length = 2702

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 144  ccccatctcccgccaagggcgatggtcatcatctcgtagatcttgccccccaactccgct 203
            |||||||||||||||||||| || ||||||||||| |||||||| || ||||||||||| 
Sbjct: 2355 ccccatctcccgccaagggcaattgtcatcatctcatagatcttaccacccaactccgca 2296

                       
Query: 204  ggactctcagg 214
            ||||| |||||
Sbjct: 2295 ggactgtcagg 2285


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,643,485
Number of Sequences: 3902068
Number of extensions: 1643485
Number of successful extensions: 116062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116000
Number of HSP's gapped (non-prelim): 61
length of query: 214
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 192
effective length of database: 17,147,199,772
effective search space: 3292262356224
effective search space used: 3292262356224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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