ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible l... 182 4e-43
2emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2... 86 7e-14
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 86 7e-14
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 86 7e-14
5emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 86 7e-14
6emb|AJ270938.1|OSA270938 Oryza sativa mRNA for lipoxygenase (rci... 78 2e-11
7dbj|AK072241.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
8dbj|AK066737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
9emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa... 78 2e-11
10ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-04
11ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-04
12gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 54 2e-04
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 2e-04
14emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2... 54 2e-04
15gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual posit... 54 2e-04
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
17dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
18dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
19dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
20dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
21gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full... 52 0.001
22gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds 52 0.001
23gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, co... 52 0.001
24gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-... 52 0.001
25gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 50 0.004
26gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 geno... 50 0.004
27gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.004
28ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.014
29gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRN... 48 0.014
30emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 48 0.014
31gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 48 0.014
32gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds 48 0.014
33dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.014
34gb|AY111869.1| Zea mays CL452_-8 mRNA sequence 48 0.014
35gb|AY103567.1| Zea mays PCO116252 mRNA sequence 48 0.014
36gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partia... 48 0.014
37gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 48 0.014
38ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.22
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
40dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
41dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.22
42dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.22
43ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.88
44gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 42 0.88
45gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complet... 42 0.88
46ref|XM_524799.1| PREDICTED: Pan troglodytes similar to potassium... 40 3.5
47ref|NM_005549.2| Homo sapiens potassium voltage-gated channel, s... 40 3.5
48gb|BC074990.2| Homo sapiens potassium voltage-gated channel, sha... 40 3.5
49gb|AC132405.3| Mus musculus BAC clone RP23-332I1 from chromosome... 40 3.5
50ref|XM_582224.2| PREDICTED: Bos taurus similar to potassium volt... 40 3.5
51ref|XM_983966.1| PREDICTED: Mus musculus potassium voltage-gated... 40 3.5
52ref|XM_143471.4| PREDICTED: Mus musculus potassium voltage-gated... 40 3.5
53ref|XM_547232.2| PREDICTED: Canis familiaris similar to potassiu... 40 3.5
54ref|XM_946728.1| Theileria annulata strain Ankara hypothetical p... 40 3.5
55emb|AL596224.10| Human DNA sequence from clone RP11-26F12 on chr... 40 3.5
56emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on ch... 40 3.5
57gb|BC069165.1| Homo sapiens cDNA clone IMAGE:7216995 40 3.5
58gb|AC010012.5| Drosophila melanogaster 3L BAC RP98-22J16 (Roswel... 40 3.5
59dbj|AK157965.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 40 3.5
60ref|XM_227577.3| PREDICTED: Rattus norvegicus potassium voltage-... 40 3.5
61gb|AY110522.1| Zea mays CL4677_2 mRNA sequence 40 3.5
62gb|AY104322.1| Zea mays PCO093659 mRNA sequence 40 3.5
63gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 ... 40 3.5
64gb|U96110.1|HSU96110 Homo sapiens cyclic GMP gated potassium cha... 40 3.5
65gb|U38182.1|OCU38182 Oryctolagus cuniculus cGMP-gated potassium ... 40 3.5 
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA,
            complete cds
          Length = 3054

 Score =  182 bits (92), Expect = 4e-43
 Identities = 95/96 (98%)
 Strand = Plus / Minus

                                                                        
Query: 25   catcgtgtcctttaattataatttggggctcattcccattatacccaccgccgggccaag 84
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3034 catcgtgtcctttaattataatttggtgctcattcccattatacccaccgccgggccaag 2975

                                                
Query: 85   agactgaagacactcttatttacgcctagttgagtt 120
            ||||||||||||||||||||||||||||||||||||
Sbjct: 2974 agactgaagacactcttatttacgcctagttgagtt 2939



 Score =  159 bits (80), Expect = 5e-36
 Identities = 80/80 (100%)
 Strand = Plus / Minus

                                                                        
Query: 190  cgtccgtgggatcaccgtccgacggcctgagcagcacatacggcaccatgccggcgccgt 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2854 cgtccgtgggatcaccgtccgacggcctgagcagcacatacggcaccatgccggcgccgt 2795

                                
Query: 250  gtcggtttttccggtcgggg 269
            ||||||||||||||||||||
Sbjct: 2794 gtcggtttttccggtcgggg 2775



 Score =  149 bits (75), Expect = 5e-33
 Identities = 75/75 (100%)
 Strand = Plus / Minus

                                                                        
Query: 136  aggcagctcaaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccg 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2923 aggcagctcaaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccg 2864

                           
Query: 196  tgggatcaccgtccg 210
            |||||||||||||||
Sbjct: 2863 tgggatcaccgtccg 2849
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>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene)
          Length = 3023

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                        
Query: 145  aaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccgtgggatcac 204
            ||||||| |||||||| || |||||||||||||||||| | ||  ||||| | |||| ||
Sbjct: 2892 aaatggaaatgctgttcggaatgcccatctccatcaccgttttagcgtccatcggattac 2833

                                                                       
Query: 205  cgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtttttccgg 263
            ||| | | |||||||||||||| |||||||| | |||||| ||||| |||||| |||||
Sbjct: 2832 cgttcaatggcctgagcagcacgtacggcactacgccggcaccgtggcggtttctccgg 2774
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                           
Query: 140      agctcaaatggagatgctgttggggatgcccatctccatcacc 182
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22970463 agctcaaatggagatgctgttggggatgcccatctccatcacc 22970421



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                            
Query: 142      ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 201
                ||||||| ||||||||||||||||| ||||||||||||||   | ||  |||| | || |
Sbjct: 22888635 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 22888694

                                                                       
Query: 202      caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 256
                ||||||  |||||| |||||||||| |||||||||| ||||| ||| || |||||
Sbjct: 22888695 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 22888749
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                           
Query: 140      agctcaaatggagatgctgttggggatgcccatctccatcacc 182
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22898654 agctcaaatggagatgctgttggggatgcccatctccatcacc 22898612



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 96/115 (83%)
 Strand = Plus / Plus

                                                                            
Query: 142      ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 201
                ||||||| ||||||||||||||||| ||||||||||||||   | ||  |||| | || |
Sbjct: 22816826 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 22816885

                                                                       
Query: 202      caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 256
                ||||||  |||||| |||||||||| |||||||||| ||||| ||| || |||||
Sbjct: 22816886 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 22816940
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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155568

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                        
Query: 140   agctcaaatggagatgctgttggggatgcccatctccatcacc 182
             |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79740 agctcaaatggagatgctgttggggatgcccatctccatcacc 79698
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>emb|AJ270938.1|OSA270938 Oryza sativa mRNA for lipoxygenase (rci-1 gene)
          Length = 3018

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                        
Query: 142  ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 201
            ||||||| ||||||||||||||||| ||||||||||||||   | ||  |||| | || |
Sbjct: 2817 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 2758

                                                                   
Query: 202  caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 256
            ||||||  |||||| |||||||||| |||||||||| ||||| ||| || |||||
Sbjct: 2757 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 2703
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>dbj|AK072241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002P20, full
            insert sequence
          Length = 3080

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                        
Query: 142  ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 201
            ||||||| ||||||||||||||||| ||||||||||||||   | ||  |||| | || |
Sbjct: 2836 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 2777

                                                                   
Query: 202  caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 256
            ||||||  |||||| |||||||||| |||||||||| ||||| ||| || |||||
Sbjct: 2776 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 2722
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>dbj|AK066737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079G10, full
            insert sequence
          Length = 2747

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                        
Query: 142  ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 201
            ||||||| ||||||||||||||||| ||||||||||||||   | ||  |||| | || |
Sbjct: 2343 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 2284

                                                                   
Query: 202  caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 256
            ||||||  |||||| |||||||||| |||||||||| ||||| ||| || |||||
Sbjct: 2283 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 2229
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>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                         
Query: 142   ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccgtgggat 201
             ||||||| ||||||||||||||||| ||||||||||||||   | ||  |||| | || |
Sbjct: 68209 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 68150

                                                                    
Query: 202   caccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtgtcggtt 256
             ||||||  |||||| |||||||||| |||||||||| ||||| ||| || |||||
Sbjct: 68149 caccgtaggacggcttgagcagcacgtacggcaccacgccggggccctgccggtt 68095
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>ref|XM_469412.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2686

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 142  ctcaaatggagatgctgttggggatgcccat 172
            |||| ||||||||||||||||||||||||||
Sbjct: 2447 ctcagatggagatgctgttggggatgcccat 2417
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>ref|XM_469411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3165

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 142  ctcaaatggagatgctgttggggatgcccat 172
            |||| ||||||||||||||||||||||||||
Sbjct: 2926 ctcagatggagatgctgttggggatgcccat 2896
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 142   ctcaaatggagatgctgttggggatgcccat 172
             |||| ||||||||||||||||||||||||||
Sbjct: 65817 ctcagatggagatgctgttggggatgcccat 65787



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   gagatgctgttggggatgccc 170
             |||||||||||||||||||||
Sbjct: 47230 gagatgctgttggggatgccc 47210
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 142      ctcaaatggagatgctgttggggatgcccat 172
                |||| ||||||||||||||||||||||||||
Sbjct: 27821687 ctcagatggagatgctgttggggatgcccat 27821657



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 142      ctcaaatggagatgctgttggggatgccc 170
                ||||||||| |||||||||||||||||||
Sbjct: 14300017 ctcaaatggtgatgctgttggggatgccc 14300045



 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 147      atggagatgctgttggggatgccc 170
                ||||||||||||||||||||||||
Sbjct: 30026445 atggagatgctgttggggatgccc 30026422



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 150      gagatgctgttggggatgccc 170
                |||||||||||||||||||||
Sbjct: 27803100 gagatgctgttggggatgccc 27803080
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>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene)
          Length = 2967

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 143  tcaaatggagatgctgttggggatgcc 169
            |||||||||||||||||||||||||||
Sbjct: 2774 tcaaatggagatgctgttggggatgcc 2748



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 211  acggcctgagcagcacatacggcaccatgccggcgcc 247
            ||||| |||||||| | |||||||| |||||||||||
Sbjct: 2721 acggcttgagcagctcgtacggcacgatgccggcgcc 2685
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>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity
            lipoxygenase mRNA, complete cds
          Length = 3154

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 142  ctcaaatggagatgctgttggggatgcccat 172
            |||| ||||||||||||||||||||||||||
Sbjct: 2920 ctcagatggagatgctgttggggatgcccat 2890
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 142      ctcaaatggagatgctgttggggatgcccat 172
                |||| ||||||||||||||||||||||||||
Sbjct: 27913011 ctcagatggagatgctgttggggatgcccat 27912981



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 142      ctcaaatggagatgctgttggggatgccc 170
                ||||||||| |||||||||||||||||||
Sbjct: 14294992 ctcaaatggtgatgctgttggggatgccc 14295020



 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 147      atggagatgctgttggggatgccc 170
                ||||||||||||||||||||||||
Sbjct: 30117867 atggagatgctgttggggatgccc 30117844



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 150      gagatgctgttggggatgccc 170
                |||||||||||||||||||||
Sbjct: 27894424 gagatgctgttggggatgccc 27894404
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>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full
            insert sequence
          Length = 1560

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 142  ctcaaatggagatgctgttggggatgcccat 172
            |||| ||||||||||||||||||||||||||
Sbjct: 1333 ctcagatggagatgctgttggggatgcccat 1303
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>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full
            insert sequence
          Length = 2851

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 142  ctcaaatggagatgctgttggggatgcccat 172
            |||| ||||||||||||||||||||||||||
Sbjct: 2598 ctcagatggagatgctgttggggatgcccat 2568
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>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full
            insert sequence
          Length = 3167

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 142  ctcaaatggagatgctgttggggatgcccat 172
            |||| ||||||||||||||||||||||||||
Sbjct: 2928 ctcagatggagatgctgttggggatgcccat 2898
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>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full
            insert sequence
          Length = 1726

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 142  ctcaaatggagatgctgttggggatgcccat 172
            |||| ||||||||||||||||||||||||||
Sbjct: 1498 ctcagatggagatgctgttggggatgcccat 1468
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>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA
           sequence
          Length = 1020

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 141 gctcaaatggagatgctgttggggatgccc 170
           ||||| ||||||||||||||||||||||||
Sbjct: 755 gctcagatggagatgctgttggggatgccc 726
to top
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds
          Length = 5013

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 141  gctcaaatggagatgctgttggggatgccc 170
            ||||| ||||||||||||||||||||||||
Sbjct: 4664 gctcagatggagatgctgttggggatgccc 4635
to top
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds
          Length = 3003

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 139  cagctcaaatggagatgctgttggggatgcccat 172
            ||||||| ||||||| ||||||||||||||||||
Sbjct: 2768 cagctcagatggagacgctgttggggatgcccat 2735
to top
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds
          Length = 2267

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 141  gctcaaatggagatgctgttggggatgccc 170
            ||||| ||||||||||||||||||||||||
Sbjct: 2066 gctcagatggagatgctgttggggatgccc 2037
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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 142 ctcaaatggagatgctgttggggatgccc 170
           |||| ||||||||||||||||||||||||
Sbjct: 907 ctcagatggagatgctgttggggatgccc 879
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>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete
             sequence
          Length = 158714

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 142   ctcaaatggagatgctgttggggatgccc 170
             ||||||||| |||||||||||||||||||
Sbjct: 49246 ctcaaatggtgatgctgttggggatgccc 49274
to top
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18,
              complete sequence
          Length = 122159

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 142    ctcaaatggagatgctgttggggatgccc 170
              ||||||||| |||||||||||||||||||
Sbjct: 111405 ctcaaatggtgatgctgttggggatgccc 111433
to top
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 147  atggagatgctgttggggatgccc 170
            ||||||||||||||||||||||||
Sbjct: 2609 atggagatgctgttggggatgccc 2586
to top
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds
          Length = 1331

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 147  atggagatgctgttggggatgccc 170
            ||||||||||||||||||||||||
Sbjct: 1082 atggagatgctgttggggatgccc 1059
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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 147  atggagatgctgttggggatgccc 170
            ||||||||||||||||||||||||
Sbjct: 2691 atggagatgctgttggggatgccc 2668
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 147   atggagatgctgttggggatgccc 170
             ||||||||||||||||||||||||
Sbjct: 81306 atggagatgctgttggggatgccc 81329
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>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds
          Length = 2595

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 147  atggagatgctgttggggatgccc 170
            ||||||||||||||||||||||||
Sbjct: 2591 atggagatgctgttggggatgccc 2568
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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 147  atggagatgctgttggggatgccc 170
            ||||||||||||||||||||||||
Sbjct: 2724 atggagatgctgttggggatgccc 2701
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>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence
          Length = 568

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 141 gctcaaatggagatgctgttggggatgcccat 172
           ||||| ||||||||||||||||| ||||||||
Sbjct: 369 gctcatatggagatgctgttgggaatgcccat 338
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>gb|AY103567.1| Zea mays PCO116252 mRNA sequence
          Length = 3135

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 141  gctcaaatggagatgctgttggggatgcccat 172
            ||||| ||||||||||||||||| ||||||||
Sbjct: 2902 gctcatatggagatgctgttgggaatgcccat 2871
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>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds
          Length = 1814

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 147  atggagatgctgttggggatgccc 170
            ||||||||||||||||||||||||
Sbjct: 1552 atggagatgctgttggggatgccc 1529
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>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 147  atggagatgctgttggggatgccc 170
            ||||||||||||||||||||||||
Sbjct: 2653 atggagatgctgttggggatgccc 2630
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>ref|XM_464447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3123

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 211  acggcctgagcagcacatacggcaccatgccggcgccg 248
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 2828 acggcttgagcagctcgtacggcacgatgccggcgccg 2791



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 142  ctcaaatggagatgctgttggggatgccc 170
            |||| |||||||||||||| |||||||||
Sbjct: 2882 ctcagatggagatgctgtttgggatgccc 2854
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 211     acggcctgagcagcacatacggcaccatgccggcgccg 248
               ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 5277016 acggcttgagcagctcgtacggcacgatgccggcgccg 5277053



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 142     ctcaaatggagatgctgttggggatgccc 170
               |||| |||||||||||||| |||||||||
Sbjct: 5276962 ctcagatggagatgctgtttgggatgccc 5276990
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>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1225_F07
          Length = 142772

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 211  acggcctgagcagcacatacggcaccatgccggcgccg 248
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 3319 acggcttgagcagctcgtacggcacgatgccggcgccg 3356



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 142  ctcaaatggagatgctgttggggatgccc 170
            |||| |||||||||||||| |||||||||
Sbjct: 3265 ctcagatggagatgctgtttgggatgccc 3293
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>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full
            insert sequence
          Length = 3160

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 211  acggcctgagcagcacatacggcaccatgccggcgccg 248
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 2827 acggcttgagcagctcgtacggcacgatgccggcgccg 2790



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 142  ctcaaatggagatgctgttggggatgccc 170
            |||| |||||||||||||| |||||||||
Sbjct: 2881 ctcagatggagatgctgtttgggatgccc 2853
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>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full
            insert sequence
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 211  acggcctgagcagcacatacggcaccatgccggcgccg 248
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 1989 acggcttgagcagctcgtacggcacgatgccggcgccg 1952



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 142  ctcaaatggagatgctgttggggatgccc 170
            |||| |||||||||||||| |||||||||
Sbjct: 2043 ctcagatggagatgctgtttgggatgccc 2015
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>ref|XM_469409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2601

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 150  gagatgctgttggggatgccc 170
            |||||||||||||||||||||
Sbjct: 2594 gagatgctgttggggatgccc 2574
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>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   gagatgctgttggggatgccc 170
             |||||||||||||||||||||
Sbjct: 10793 gagatgctgttggggatgccc 10813
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>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds
          Length = 2845

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 142  ctcaaatggagatgctgttggggatgccc 170
            ||||||||||||||||||| || ||||||
Sbjct: 2623 ctcaaatggagatgctgtttggaatgccc 2595
to top
>ref|XM_524799.1| PREDICTED: Pan troglodytes similar to potassium voltage-gated
           channel, shaker-related subfamily, member 10; cyclic GMP
           gated potassium channel (LOC469414), mRNA
          Length = 1671

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 catctccatcaccatcttct 189
           ||||||||||||||||||||
Sbjct: 681 catctccatcaccatcttct 700
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>ref|NM_005549.2| Homo sapiens potassium voltage-gated channel, shaker-related
            subfamily, member 10 (KCNA10), mRNA
          Length = 1959

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 170  catctccatcaccatcttct 189
            ||||||||||||||||||||
Sbjct: 1069 catctccatcaccatcttct 1088
to top
>gb|BC074990.2| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 10, mRNA (cDNA clone MGC:103916
           IMAGE:30915306), complete cds
          Length = 1599

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 catctccatcaccatcttct 189
           ||||||||||||||||||||
Sbjct: 711 catctccatcaccatcttct 730
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>gb|AC132405.3| Mus musculus BAC clone RP23-332I1 from chromosome 3, complete sequence
          Length = 207726

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    catctccatcaccatcttct 189
              ||||||||||||||||||||
Sbjct: 187186 catctccatcaccatcttct 187167
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>ref|XM_582224.2| PREDICTED: Bos taurus similar to potassium voltage-gated channel,
           shaker-related subfamily, member 10 (LOC538721), mRNA
          Length = 1643

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 catctccatcaccatcttct 189
           ||||||||||||||||||||
Sbjct: 762 catctccatcaccatcttct 781
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>ref|XM_983966.1| PREDICTED: Mus musculus potassium voltage-gated channel,
           shaker-related subfamily, member 10 (Kcna10), mRNA
          Length = 1826

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 catctccatcaccatcttct 189
           ||||||||||||||||||||
Sbjct: 840 catctccatcaccatcttct 859
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>ref|XM_143471.4| PREDICTED: Mus musculus potassium voltage-gated channel,
           shaker-related subfamily, member 10 (Kcna10), mRNA
          Length = 1826

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 catctccatcaccatcttct 189
           ||||||||||||||||||||
Sbjct: 840 catctccatcaccatcttct 859
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>ref|XM_547232.2| PREDICTED: Canis familiaris similar to potassium voltage-gated
           channel, shaker-related subfamily, member 10
           (LOC490111), mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 catctccatcaccatcttct 189
           ||||||||||||||||||||
Sbjct: 795 catctccatcaccatcttct 814
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>ref|XM_946728.1| Theileria annulata strain Ankara hypothetical protein (TA15705)
           partial mRNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 169 ccatctccatcaccatcttc 188
           ||||||||||||||||||||
Sbjct: 95  ccatctccatcaccatcttc 76
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>emb|AL596224.10| Human DNA sequence from clone RP11-26F12 on chromosome 1 Contains part
             of the CSMD2 gene for CUB and Sushi multiple domains 2,
             complete sequence
          Length = 114784

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    gtgtcctttaattataattt 48
             ||||||||||||||||||||
Sbjct: 67048 gtgtcctttaattataattt 67029
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>emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on chromosome 1 Contains the
             3' end of the PROK1 gene for Prokineticin 1, a putatative
             novel transcript, an unprocessed pseudogene, a novel
             transcript and the LOC395116 gene for the shaker subfamily
             potassium channel KCNA10, complete sequence
          Length = 101529

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   catctccatcaccatcttct 189
             ||||||||||||||||||||
Sbjct: 64506 catctccatcaccatcttct 64487
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>gb|BC069165.1| Homo sapiens cDNA clone IMAGE:7216995
          Length = 1959

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 catctccatcaccatcttct 189
           ||||||||||||||||||||
Sbjct: 891 catctccatcaccatcttct 872
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>gb|AC010012.5| Drosophila melanogaster 3L BAC RP98-22J16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 170466

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   ccatctccatcaccatcttc 188
             ||||||||||||||||||||
Sbjct: 69693 ccatctccatcaccatcttc 69712
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>dbj|AK157965.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
           library, clone:F930012I12 product:Cyclic GMP gated
           potassium channel homolog [Homo sapiens], full insert
           sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 catctccatcaccatcttct 189
           ||||||||||||||||||||
Sbjct: 841 catctccatcaccatcttct 860
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>ref|XM_227577.3| PREDICTED: Rattus norvegicus potassium voltage-gated channel,
           shaker-related subfamily, member 10 (predicted)
           (Kcna10_predicted), mRNA
          Length = 1603

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 catctccatcaccatcttct 189
           ||||||||||||||||||||
Sbjct: 710 catctccatcaccatcttct 729
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>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence
          Length = 1304

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 147 atggagatgctgttggggatgccc 170
           |||||||||||| |||||||||||
Sbjct: 138 atggagatgctgctggggatgccc 161
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>gb|AY104322.1| Zea mays PCO093659 mRNA sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 147  atggagatgctgttggggatgccc 170
            |||||||||||| |||||||||||
Sbjct: 1210 atggagatgctgctggggatgccc 1187
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>gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 of 83 of the complete
              sequence
          Length = 312072

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    ccatctccatcaccatcttc 188
              ||||||||||||||||||||
Sbjct: 127765 ccatctccatcaccatcttc 127784
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>gb|U96110.1|HSU96110 Homo sapiens cyclic GMP gated potassium channel (Kcn1) gene,
           complete cds
          Length = 1580

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 catctccatcaccatcttct 189
           ||||||||||||||||||||
Sbjct: 690 catctccatcaccatcttct 709
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>gb|U38182.1|OCU38182 Oryctolagus cuniculus cGMP-gated potassium channel (Kcn1) mRNA,
            complete cds
          Length = 2178

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 170  catctccatcaccatcttct 189
            ||||||||||||||||||||
Sbjct: 1320 catctccatcaccatcttct 1339


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,723,044
Number of Sequences: 3902068
Number of extensions: 1723044
Number of successful extensions: 38540
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38334
Number of HSP's gapped (non-prelim): 206
length of query: 269
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 247
effective length of database: 17,147,199,772
effective search space: 4235358343684
effective search space used: 4235358343684
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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