Clone Name | rbastl56e11 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4,... | 62 | 1e-06 | 2 | dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... | 62 | 1e-06 | 3 | gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Ca... | 42 | 1.1 | 4 | emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19,... | 40 | 4.2 |
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>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08, complete sequence Length = 130521 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 160 tcgtattggtaatccaccaataaccgcccaatcatatacactctaca 206 |||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 80082 tcgtattgataatccaccaacaattgcccaatcatatacactctaca 80036
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 160 tcgtattggtaatccaccaataaccgcccaatcatatacactctaca 206 |||||||| ||||||||||| || |||||||||||||||||||||| Sbjct: 15893517 tcgtattgataatccaccaacaattgcccaatcatatacactctaca 15893471
>gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198488 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 caaagggctcatttaacaaat 271 ||||||||||||||||||||| Sbjct: 98002 caaagggctcatttaacaaat 97982
>emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19, complete sequence Length = 148298 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 atggattcactgaatcctgcaacg 135 |||| ||||||||||||||||||| Sbjct: 51228 atggcttcactgaatcctgcaacg 51205 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,486,996 Number of Sequences: 3902068 Number of extensions: 2486996 Number of successful extensions: 77293 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77283 Number of HSP's gapped (non-prelim): 10 length of query: 319 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 297 effective length of database: 17,147,199,772 effective search space: 5092718332284 effective search space used: 5092718332284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)