ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PTN22_MOUSE (P29352) Tyrosine-protein phosphatase non-receptor t... 28 4.1
2TAL_YERPS (Q66ET5) Transaldolase (EC 2.2.1.2) 28 5.4
3TAL_YERPE (Q8ZIN2) Transaldolase (EC 2.2.1.2) 28 5.4
4DPO1_TREPA (P74933) DNA polymerase I (EC 2.7.7.7) (POL I) 28 7.0
5LCTL_HUMAN (Q6UWM7) Lactase-like protein precursor (Klotho/lacta... 27 9.1

>PTN22_MOUSE (P29352) Tyrosine-protein phosphatase non-receptor type 22 (EC|
           3.1.3.48) (Hematopoietic cell protein-tyrosine
           phosphatase 70Z-PEP)
          Length = 802

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 47  MSMRGIFSQRCKITSIQKEKKKISKPTSDLLKISMFTTKKKDIRVYPSTL 196
           M  R I  Q  K    QK+K    +  S+ LK+   +TK K  ++YP+T+
Sbjct: 1   MDQREILQQLLK--EAQKKKLNSEEFASEFLKLKRQSTKYKADKIYPTTV 48



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>TAL_YERPS (Q66ET5) Transaldolase (EC 2.2.1.2)|
          Length = 317

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = +1

Query: 37  FLLHEYEGDLFSAMQDYFNSKGKKKNFQTNI*PSEDINV--------YHKKKGYQGLPIN 192
           FL+  + G +     D++ + G +K F     PSED  V        Y+KK GY+ + + 
Sbjct: 173 FLISPFVGRIL----DWYKANGDQKEFA----PSEDPGVVSVTEIYQYYKKHGYKTVVMG 224

Query: 193 TSILNL 210
            S  NL
Sbjct: 225 ASFRNL 230



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>TAL_YERPE (Q8ZIN2) Transaldolase (EC 2.2.1.2)|
          Length = 317

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = +1

Query: 37  FLLHEYEGDLFSAMQDYFNSKGKKKNFQTNI*PSEDINV--------YHKKKGYQGLPIN 192
           FL+  + G +     D++ + G +K F     PSED  V        Y+KK GY+ + + 
Sbjct: 173 FLISPFVGRIL----DWYKANGDQKEFA----PSEDPGVVSVTEIYQYYKKHGYKTVVMG 224

Query: 193 TSILNL 210
            S  NL
Sbjct: 225 ASFRNL 230



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>DPO1_TREPA (P74933) DNA polymerase I (EC 2.7.7.7) (POL I)|
          Length = 997

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 40  LLHEYEGDLFSAMQDYFNSKGKKKNFQTNI*PSEDINVYHKKKGYQGLPINTSILNLL 213
           L+ +YE D+FS     FN  G  K  QT +   +++++   KK  QG   + S+L  L
Sbjct: 633 LIQQYEHDIFSLAGHEFNI-GSPKQLQTVL--FQELHLPPGKKNTQGYSTDHSVLKKL 687



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>LCTL_HUMAN (Q6UWM7) Lactase-like protein precursor (Klotho/lactase-phlorizin|
           hydrolase-related protein)
          Length = 567

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 56  RGIFSQRCKITSIQKEKKKISKPTSDLLKISMFTTKKKDIRVYPS 190
           +G+   R  + S+Q+  K   K TSD L +  FTT+    R YPS
Sbjct: 314 QGLEMSRLPVFSLQE--KSYIKGTSDFLGLGHFTTRYITERNYPS 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,752,199
Number of Sequences: 219361
Number of extensions: 755258
Number of successful extensions: 1638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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