Clone Name | rbastl56e04 |
---|---|
Clone Library Name | barley_pub |
>HAX1_MOUSE (O35387) HS1-associating protein X-1 (HAX-1) (HS1-binding protein)| Length = 280 Score = 31.2 bits (69), Expect = 0.69 Identities = 18/36 (50%), Positives = 18/36 (50%) Frame = -1 Query: 213 GSSGPFDDLLDTWDVVFLSLLPHFGASEPLDYDSMV 106 GS GPF L DTW V PH A E D DS V Sbjct: 162 GSQGPFHRLDDTWPV-----SPHSRAKEDKDLDSQV 192
>VANT_ENTGA (Q9X3P3) Serine/alanine racemase (EC 5.1.1.-) (EC 5.1.1.1)| (Vancomycin C-type resistance protein vanT) Length = 698 Score = 30.4 bits (67), Expect = 1.2 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = -1 Query: 213 GSSGPFDDLLDTWDVVFLSL---LPHFGASEPLDYDSMVLLNRQICTFE 76 G + D +L +D+ FL++ H G+++ L+ DSM+ +QI F+ Sbjct: 467 GVTPTIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQIACFD 515
>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral| proteinase D) (CANP D) (Small optic lobes protein) Length = 1594 Score = 28.9 bits (63), Expect = 3.4 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +3 Query: 135 RHQSVAASLGTQHPRCPTGHQRGHYYHHYI 224 R Q +A SLG + H H++HHY+ Sbjct: 176 RGQDLAGSLGNRGELLAADHSHPHHHHHYL 205
>NPBW2_BOVIN (Q8MJV2) Neuropeptides B/W receptor type 2 (G-protein coupled| receptor 8) Length = 336 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -2 Query: 269 HLRVPTFGDALI*YQYVVMVVVAPLMTCWTPGMLCS*ACCHTLVPQNLWIMIV 111 H G A +V+ V+A + CWTP L S T +PQ ++IV Sbjct: 245 HSGAKALGKAKRKVSLLVLAVLAVGLLCWTPFHLASIVALTTDLPQTPLVIIV 297
>NPBW2_HUMAN (P48146) Neuropeptides B/W receptor type 2 (G-protein coupled| receptor 8) Length = 333 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 221 VVMVVVAPLMTCWTPGMLCS*ACCHTLVPQ 132 +V+VV+A + CWTP L S T +PQ Sbjct: 261 LVLVVLAVCLLCWTPFHLASVVALTTDLPQ 290
>ACM4_XENLA (P30544) Muscarinic acetylcholine receptor M4| Length = 484 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = -2 Query: 218 VMVVVAPLMTCWTPG--MLCS*ACCHTLVPQNLWIMIVWCC 102 + ++ + WTP M+ C T +P+ +W + W C Sbjct: 407 IFAILLAFIITWTPYNVMVLINTFCQTCIPETIWYIGYWLC 447
>TPIS_STRT2 (Q8VVC1) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 252 Score = 27.3 bits (59), Expect = 10.0 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 1/97 (1%) Frame = +3 Query: 12 STILT*FKGANLKVQQHHTNIIQRCKFDGSTAPYYHNPKVLRHQSVAASLGTQHPRCPTG 191 +T++ KG+NLKV +T F G T+P V +GT + G Sbjct: 49 TTVIAAAKGSNLKVAAQNTYFENSGAFTGETSP-----------QVLKEIGTDY--VVIG 95 Query: 192 H-QRGHYYHHYILVLDKRITKSWNAQVRLALSRRTCC 299 H +R Y+H D+ I K A + CC Sbjct: 96 HSERRDYFHE----TDEDINKKAKAIFANGMIPIICC 128
>SYV_HALMA (Q5V1H0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 901 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = -1 Query: 228 PVCSDGSSGPFDDLLDTWDVVFLSLLPHFGASEPLDYDSMVLLNRQICTFEL 73 P C S P +D+ DTW L+ L + G D +S + ++ F+L Sbjct: 477 PECGHDSLTPEEDVFDTWATSSLTPLVNAGWDWDADSESFTMELPELYPFDL 528
>ACM4_CHICK (P17200) Muscarinic acetylcholine receptor M4| Length = 490 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = -2 Query: 218 VMVVVAPLMTCWTPG--MLCS*ACCHTLVPQNLWIMIVWCC 102 + ++ + WTP M+ C T VP+ +W + W C Sbjct: 413 IFAILLAFILTWTPYNVMVLINTFCETCVPETVWSIGYWLC 453 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,672,921 Number of Sequences: 219361 Number of extensions: 823368 Number of successful extensions: 1945 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1848 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1935 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)