ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAX1_MOUSE (O35387) HS1-associating protein X-1 (HAX-1) (HS1-bin... 31 0.69
2VANT_ENTGA (Q9X3P3) Serine/alanine racemase (EC 5.1.1.-) (EC 5.1... 30 1.2
3CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated n... 29 3.4
4NPBW2_BOVIN (Q8MJV2) Neuropeptides B/W receptor type 2 (G-protei... 28 5.8
5NPBW2_HUMAN (P48146) Neuropeptides B/W receptor type 2 (G-protei... 28 7.6
6ACM4_XENLA (P30544) Muscarinic acetylcholine receptor M4 28 7.6
7TPIS_STRT2 (Q8VVC1) Triosephosphate isomerase (EC 5.3.1.1) (TIM)... 27 10.0
8SYV_HALMA (Q5V1H0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 27 10.0
9ACM4_CHICK (P17200) Muscarinic acetylcholine receptor M4 27 10.0

>HAX1_MOUSE (O35387) HS1-associating protein X-1 (HAX-1) (HS1-binding protein)|
          Length = 280

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 18/36 (50%), Positives = 18/36 (50%)
 Frame = -1

Query: 213 GSSGPFDDLLDTWDVVFLSLLPHFGASEPLDYDSMV 106
           GS GPF  L DTW V      PH  A E  D DS V
Sbjct: 162 GSQGPFHRLDDTWPV-----SPHSRAKEDKDLDSQV 192



to top

>VANT_ENTGA (Q9X3P3) Serine/alanine racemase (EC 5.1.1.-) (EC 5.1.1.1)|
           (Vancomycin C-type resistance protein vanT)
          Length = 698

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -1

Query: 213 GSSGPFDDLLDTWDVVFLSL---LPHFGASEPLDYDSMVLLNRQICTFE 76
           G +   D +L  +D+ FL++     H G+++ L+ DSM+   +QI  F+
Sbjct: 467 GVTPTIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQIACFD 515



to top

>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase D) (CANP D) (Small optic lobes protein)
          Length = 1594

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 135 RHQSVAASLGTQHPRCPTGHQRGHYYHHYI 224
           R Q +A SLG +       H   H++HHY+
Sbjct: 176 RGQDLAGSLGNRGELLAADHSHPHHHHHYL 205



to top

>NPBW2_BOVIN (Q8MJV2) Neuropeptides B/W receptor type 2 (G-protein coupled|
           receptor 8)
          Length = 336

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 269 HLRVPTFGDALI*YQYVVMVVVAPLMTCWTPGMLCS*ACCHTLVPQNLWIMIV 111
           H      G A      +V+ V+A  + CWTP  L S     T +PQ   ++IV
Sbjct: 245 HSGAKALGKAKRKVSLLVLAVLAVGLLCWTPFHLASIVALTTDLPQTPLVIIV 297



to top

>NPBW2_HUMAN (P48146) Neuropeptides B/W receptor type 2 (G-protein coupled|
           receptor 8)
          Length = 333

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 221 VVMVVVAPLMTCWTPGMLCS*ACCHTLVPQ 132
           +V+VV+A  + CWTP  L S     T +PQ
Sbjct: 261 LVLVVLAVCLLCWTPFHLASVVALTTDLPQ 290



to top

>ACM4_XENLA (P30544) Muscarinic acetylcholine receptor M4|
          Length = 484

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 218 VMVVVAPLMTCWTPG--MLCS*ACCHTLVPQNLWIMIVWCC 102
           +  ++   +  WTP   M+     C T +P+ +W +  W C
Sbjct: 407 IFAILLAFIITWTPYNVMVLINTFCQTCIPETIWYIGYWLC 447



to top

>TPIS_STRT2 (Q8VVC1) Triosephosphate isomerase (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 252

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
 Frame = +3

Query: 12  STILT*FKGANLKVQQHHTNIIQRCKFDGSTAPYYHNPKVLRHQSVAASLGTQHPRCPTG 191
           +T++   KG+NLKV   +T       F G T+P            V   +GT +     G
Sbjct: 49  TTVIAAAKGSNLKVAAQNTYFENSGAFTGETSP-----------QVLKEIGTDY--VVIG 95

Query: 192 H-QRGHYYHHYILVLDKRITKSWNAQVRLALSRRTCC 299
           H +R  Y+H      D+ I K   A     +    CC
Sbjct: 96  HSERRDYFHE----TDEDINKKAKAIFANGMIPIICC 128



to top

>SYV_HALMA (Q5V1H0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 901

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 228 PVCSDGSSGPFDDLLDTWDVVFLSLLPHFGASEPLDYDSMVLLNRQICTFEL 73
           P C   S  P +D+ DTW    L+ L + G     D +S  +   ++  F+L
Sbjct: 477 PECGHDSLTPEEDVFDTWATSSLTPLVNAGWDWDADSESFTMELPELYPFDL 528



to top

>ACM4_CHICK (P17200) Muscarinic acetylcholine receptor M4|
          Length = 490

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 218 VMVVVAPLMTCWTPG--MLCS*ACCHTLVPQNLWIMIVWCC 102
           +  ++   +  WTP   M+     C T VP+ +W +  W C
Sbjct: 413 IFAILLAFILTWTPYNVMVLINTFCETCVPETVWSIGYWLC 453


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,672,921
Number of Sequences: 219361
Number of extensions: 823368
Number of successful extensions: 1945
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1935
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top