Clone Name | rbastl56e04 |
---|---|
Clone Library Name | barley_pub |
>gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full insert mRNA sequence Length = 2815 Score = 101 bits (51), Expect = 1e-18 Identities = 74/82 (90%), Gaps = 6/82 (7%) Strand = Plus / Minus Query: 237 aagcgcatcaccaaaagttggaacgcgcaagtgcgactagc------gctcagcagaaga 290 ||||||||||||||||||||||||||||||||||| || || ||||||||||||| Sbjct: 2620 aagcgcatcaccaaaagttggaacgcgcaagtgcggctggctggctggctcagcagaaga 2561 Query: 291 acatgctgctgcggactttctc 312 |||||||||||||||||||||| Sbjct: 2560 acatgctgctgcggactttctc 2539 Score = 83.8 bits (42), Expect = 3e-13 Identities = 79/89 (88%), Gaps = 3/89 (3%) Strand = Plus / Minus Query: 124 caaaggttctgaggcaccaaagtgtggcagcaagcttaggaacacaacatcccaggtgtc 183 |||||||||||||||||||| ||| ||| | |||||||||||||||||||||||| ||| Sbjct: 2728 caaaggttctgaggcaccaa-gtgcagcaaccagcttaggaacacaacatcccaggagtc 2670 Query: 184 caacaggtcatcaaaggggccactactac 212 ||||||| ||||| | |||||||||||| Sbjct: 2669 caacaggccatcaca--ggccactactac 2643
>emb|AL928586.10| Mouse DNA sequence from clone RP23-353H5 on chromosome 2, complete sequence Length = 105895 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 278 gctcagcagaagaacatgctgctgc 302 |||||||||||||||||||| |||| Sbjct: 94463 gctcagcagaagaacatgctcctgc 94487
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 catcaccaaaagttggaacg 261 |||||||||||||||||||| Sbjct: 21143571 catcaccaaaagttggaacg 21143552
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 catcaccaaaagttggaacg 261 |||||||||||||||||||| Sbjct: 111116 catcaccaaaagttggaacg 111097
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 catcaccaaaagttggaacg 261 |||||||||||||||||||| Sbjct: 41080 catcaccaaaagttggaacg 41061
>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence Length = 76158 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ctcagcagaagaacatgctgctgc 302 |||| ||||||||||||||||||| Sbjct: 35520 ctcaccagaagaacatgctgctgc 35543
>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence Length = 171307 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ctcagcagaagaacatgctgctgc 302 |||| ||||||||||||||||||| Sbjct: 162327 ctcaccagaagaacatgctgctgc 162350
>emb|BX511094.6| Zebrafish DNA sequence from clone CH211-137G12 in linkage group 19, complete sequence Length = 154360 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gctcagcagaagaacatgct 297 |||||||||||||||||||| Sbjct: 97639 gctcagcagaagaacatgct 97620 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,350,159 Number of Sequences: 3902068 Number of extensions: 2350159 Number of successful extensions: 39726 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39698 Number of HSP's gapped (non-prelim): 27 length of query: 312 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 290 effective length of database: 17,147,199,772 effective search space: 4972687933880 effective search space used: 4972687933880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)