ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full ... 101 1e-18
2emb|AL928586.10| Mouse DNA sequence from clone RP23-353H5 on chr... 42 1.0
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
4dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
5dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
6gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, c... 40 4.1
7gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, co... 40 4.1
8emb|BX511094.6| Zebrafish DNA sequence from clone CH211-137G12 i... 40 4.1

>gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full insert mRNA sequence
          Length = 2815

 Score =  101 bits (51), Expect = 1e-18
 Identities = 74/82 (90%), Gaps = 6/82 (7%)
 Strand = Plus / Minus

                                                                        
Query: 237  aagcgcatcaccaaaagttggaacgcgcaagtgcgactagc------gctcagcagaaga 290
            ||||||||||||||||||||||||||||||||||| || ||      |||||||||||||
Sbjct: 2620 aagcgcatcaccaaaagttggaacgcgcaagtgcggctggctggctggctcagcagaaga 2561

                                  
Query: 291  acatgctgctgcggactttctc 312
            ||||||||||||||||||||||
Sbjct: 2560 acatgctgctgcggactttctc 2539



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 79/89 (88%), Gaps = 3/89 (3%)
 Strand = Plus / Minus

                                                                        
Query: 124  caaaggttctgaggcaccaaagtgtggcagcaagcttaggaacacaacatcccaggtgtc 183
            |||||||||||||||||||| |||  ||| | |||||||||||||||||||||||| |||
Sbjct: 2728 caaaggttctgaggcaccaa-gtgcagcaaccagcttaggaacacaacatcccaggagtc 2670

                                         
Query: 184  caacaggtcatcaaaggggccactactac 212
            ||||||| ||||| |  ||||||||||||
Sbjct: 2669 caacaggccatcaca--ggccactactac 2643



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>emb|AL928586.10| Mouse DNA sequence from clone RP23-353H5 on chromosome 2, complete
             sequence
          Length = 105895

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 278   gctcagcagaagaacatgctgctgc 302
             |||||||||||||||||||| ||||
Sbjct: 94463 gctcagcagaagaacatgctcctgc 94487



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 242      catcaccaaaagttggaacg 261
                ||||||||||||||||||||
Sbjct: 21143571 catcaccaaaagttggaacg 21143552



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>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1144D11
          Length = 157943

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    catcaccaaaagttggaacg 261
              ||||||||||||||||||||
Sbjct: 111116 catcaccaaaagttggaacg 111097



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>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1064G04
          Length = 186704

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   catcaccaaaagttggaacg 261
             ||||||||||||||||||||
Sbjct: 41080 catcaccaaaagttggaacg 41061



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>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence
          Length = 76158

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 279   ctcagcagaagaacatgctgctgc 302
             |||| |||||||||||||||||||
Sbjct: 35520 ctcaccagaagaacatgctgctgc 35543



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>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence
          Length = 171307

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 279    ctcagcagaagaacatgctgctgc 302
              |||| |||||||||||||||||||
Sbjct: 162327 ctcaccagaagaacatgctgctgc 162350



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>emb|BX511094.6| Zebrafish DNA sequence from clone CH211-137G12 in linkage group 19,
             complete sequence
          Length = 154360

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   gctcagcagaagaacatgct 297
             ||||||||||||||||||||
Sbjct: 97639 gctcagcagaagaacatgct 97620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,350,159
Number of Sequences: 3902068
Number of extensions: 2350159
Number of successful extensions: 39726
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39698
Number of HSP's gapped (non-prelim): 27
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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