>CH60_PLAFG (P34940) Chaperonin CPN60, mitochondrial precursor|
          Length = 700

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = +1

Query: 82  ISMLFVVCTIHCYRYGISLRREWSV*RLSELNLS---AYLGCSVKGTRLEFYLSFFGT-- 246
           I +LFVV  + C RYG S++++ S    + L ++    Y+   +   R E Y+    T  
Sbjct: 6   IHILFVVIFLLCLRYGYSIKKKRSPNNKNRLFINKRLKYINSKIISRRKENYVKMKMTEN 65

Query: 247 -ATGEAGIYKFKCLNQWLM*VRKIDDVL 327
              G+  IY  +C N+ L  +  + DV+
Sbjct: 66  KVKGKDIIYGNECRNELLKGILTVSDVV 93

>TNR19_HUMAN (Q9NS68) Tumor necrosis factor receptor superfamily member 19|
           precursor (Toxicity and JNK inducer) (TRADE)
          Length = 423

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 7   KLAITSRKKRDGKFSAYIYSNTADNISMLFVVCTIHCYRYGISLRREWSV 156
           K+A T+   RD   +A I S  A  +  L ++C I+C R  +  +  WS+
Sbjct: 157 KIASTASSPRDTALAAVICSALATVLLALLILCVIYCKRQFMEKKPSWSL 206

>SYH_THEMA (Q9X0H5) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 420

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
 Frame = -2

Query: 204 YRTPQIGR*VQLRQ---SLNGPLAPKTDTVAIAVYCTY--------YKQHTNVIGCIRIN 58
           Y  PQ GR  Q  Q    + GP +PK D   I +  T+        YK H N IGC    
Sbjct: 113 YEKPQSGRLRQFHQVGFEIIGPESPKADFEVIMLVDTFLRRLGLTKYKIHLNSIGC---P 169

Query: 57  VCTK 46
           VC K
Sbjct: 170 VCRK 173

>TNR19_MOUSE (Q9JLL3) Tumor necrosis factor receptor superfamily member 19|
           precursor (Toxicity and JNK inducer) (TRADE)
          Length = 416

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 7   KLAITSRKKRDGKFSAYIYSNTADNISMLFVVCTIHCYRYGISLRREWSV 156
           K++ T    RD   +A I S  A  +  L ++C I+C R  +  +  WS+
Sbjct: 157 KISSTVSSPRDTALAAVICSALATVLLALLILCVIYCKRQFMEKKPSWSL 206

>ARPC2_YEAST (P53731) ARP2/3 complex 34 kDa subunit (p34-ARC)|
          Length = 342

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -1

Query: 268 IFLLHQLLFQRKTDKIQGAFLLQNTPD-----RQIGSAPTVV 158
           + ++ + +FQ +TDKI G   LQ   D     RQI SAP V+
Sbjct: 187 VTIIFETIFQDETDKIFGKVFLQEFVDARKRNRQIQSAPQVL 228

>CYB_DAUCA (Q94S37) Cytochrome b|
          Length = 398

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 320 SSIFLTYINHWLRHLNLYIPASPVAVP 240
           SSIF+ Y  + L H + YIPA+P+  P
Sbjct: 246 SSIFIFYAPNVLGHPDNYIPANPMPTP 272

>AST8_DROME (P09775) Achaete-scute complex protein T8 (Asense)|
          Length = 486

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +2

Query: 239 LEQQLVKQEYTSSNASTS 292
           L+QQ++KQEY S+N S+S
Sbjct: 378 LQQQVIKQEYVSTNISSS 395

>NU3M_ELITY (O21549) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 3)
          Length = 115

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 329 NRTSSIFLTYINHWLRHLNLYIPASPVAVPKKDR*NSRRVPFT 201
           N T S+ L  +  WL HLN+Y   +       D  +S R+PF+
Sbjct: 10  NATLSLGLITVAFWLPHLNIYAEKAGAYECGFDPMSSARLPFS 52

>CYB_MARPO (P26852) Cytochrome b|
          Length = 404

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 317 SIFLTYINHWLRHLNLYIPASPVAVP 240
           SIF+ Y  + L H + YIPA+P++ P
Sbjct: 244 SIFVFYAPNVLGHPDNYIPANPMSTP 269

>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 222 FKARSFYRTPQIGR*VQLRQSLNGPLAPKTDTV 124
           F+AR F R   IG+ V +      P +P TDTV
Sbjct: 400 FEAREFLRKKLIGKKVNVTVDYIRPASPATDTV 432


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,344,949
Number of Sequences: 219361
Number of extensions: 867723
Number of successful extensions: 1743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)