ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FA11_HUMAN (P03951) Coagulation factor XI precursor (EC 3.4.21.2... 30 1.5
2FATA_CORSA (Q42712) Oleoyl-acyl carrier protein thioesterase, ch... 28 7.4
3YHGN_SHIFL (P67145) UPF0056 inner membrane protein yhgN 27 9.7
4YHGN_ECOLI (P67143) UPF0056 inner membrane protein yhgN 27 9.7
5YHGN_ECO57 (P67144) UPF0056 inner membrane protein yhgN 27 9.7

>FA11_HUMAN (P03951) Coagulation factor XI precursor (EC 3.4.21.27) (Plasma|
           thromboplastin antecedent) (PTA) (FXI) [Contains:
           Coagulation factor XIa heavy chain; Coagulation factor
           XIa light chain]
          Length = 625

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -3

Query: 94  QVLLHTSPKFTRHVCGDQIL---WL*RSSICFF 5
           QV LHT+    RH+CG  I+   W+  ++ CF+
Sbjct: 402 QVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 434



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>FATA_CORSA (Q42712) Oleoyl-acyl carrier protein thioesterase, chloroplast|
           precursor (EC 3.1.2.14) (18:0-acyl-carrier protein
           thioesterase) (18:0-ACP thioesterase)
           (Acyl-[acyl-carrier protein] hydrolase) (Fragment)
          Length = 369

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 3   QKKQIDERYNHKIWSPQT*RVNLGEVCNKTCRKINKL 113
           QK   D R  + ++ P+T R++  E  NK+ +KI+KL
Sbjct: 205 QKVSDDVRDEYLVFCPKTPRLSFPEENNKSLKKISKL 241



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>YHGN_SHIFL (P67145) UPF0056 inner membrane protein yhgN|
          Length = 197

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 127 VDQANNLLIFLQVLLHTSPKFTRHVCGDQIL 35
           +D   NL IF+ VL HT PK  R +   ++L
Sbjct: 15  MDPLGNLPIFMSVLKHTEPKRRRAIMVRELL 45



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>YHGN_ECOLI (P67143) UPF0056 inner membrane protein yhgN|
          Length = 197

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 127 VDQANNLLIFLQVLLHTSPKFTRHVCGDQIL 35
           +D   NL IF+ VL HT PK  R +   ++L
Sbjct: 15  MDPLGNLPIFMSVLKHTEPKRRRAIMVRELL 45



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>YHGN_ECO57 (P67144) UPF0056 inner membrane protein yhgN|
          Length = 197

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 127 VDQANNLLIFLQVLLHTSPKFTRHVCGDQIL 35
           +D   NL IF+ VL HT PK  R +   ++L
Sbjct: 15  MDPLGNLPIFMSVLKHTEPKRRRAIMVRELL 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,069,853
Number of Sequences: 219361
Number of extensions: 571914
Number of successful extensions: 1386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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