ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, co... 42 0.96
2emb|BX649352.15| Zebrafish DNA sequence from clone DKEY-196J7 in... 42 0.96
3gb|AC114612.13| Mus musculus chromosome 7, clone RP24-80O23, com... 42 0.96
4gb|AC099035.2| Drosophila melanogaster clone BACR37H13, complete... 40 3.8
5emb|BX321867.5| Human DNA sequence from clone RP11-533H4 on chro... 40 3.8
6gb|AC008352.2|AC008352 Drosophila melanogaster, chromosome 2R, r... 40 3.8
7gb|AC007177.1|AC007177 Drosophila melanogaster, chromosome 2R, r... 40 3.8
8gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67... 40 3.8
9emb|BX248330.6| Zebrafish DNA sequence from clone CH211-278E17 i... 40 3.8

>gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, complete sequence
          Length = 188701

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 188    ccatgttcaacacaagagcagggtt 212
              ||||||||||||||||| |||||||
Sbjct: 140143 ccatgttcaacacaagaacagggtt 140167



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>emb|BX649352.15| Zebrafish DNA sequence from clone DKEY-196J7 in linkage group 1,
             complete sequence
          Length = 226763

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    gcataacatgttcaactcaca 102
             |||||||||||||||||||||
Sbjct: 84926 gcataacatgttcaactcaca 84946



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>gb|AC114612.13| Mus musculus chromosome 7, clone RP24-80O23, complete sequence
          Length = 189471

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 188    ccatgttcaacacaagagcagggtt 212
              ||||||||||||||||| |||||||
Sbjct: 139777 ccatgttcaacacaagaacagggtt 139753



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>gb|AC099035.2| Drosophila melanogaster clone BACR37H13, complete sequence
          Length = 175448

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    ttaagcacctttatccacag 246
              ||||||||||||||||||||
Sbjct: 137841 ttaagcacctttatccacag 137860



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>emb|BX321867.5| Human DNA sequence from clone RP11-533H4 on chromosome X, complete
             sequence
          Length = 91774

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   agggttcaagattaccatgc 226
             ||||||||||||||||||||
Sbjct: 45410 agggttcaagattaccatgc 45391



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>gb|AC008352.2|AC008352 Drosophila melanogaster, chromosome 2R, region 59C-59D, BAC clone
             BACR08P09, complete sequence
          Length = 181463

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   ttaagcacctttatccacag 246
             ||||||||||||||||||||
Sbjct: 74511 ttaagcacctttatccacag 74530



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>gb|AC007177.1|AC007177 Drosophila melanogaster, chromosome 2R, region 59C1-59C5, P1 clones
            DS06621 and DS02186, complete sequence
          Length = 101320

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  ttaagcacctttatccacag 246
            ||||||||||||||||||||
Sbjct: 4090 ttaagcacctttatccacag 4071



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>gb|AE003459.3| Drosophila melanogaster chromosome 2R, section 67 of 73 of the complete
              sequence
          Length = 283700

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    ttaagcacctttatccacag 246
              ||||||||||||||||||||
Sbjct: 140324 ttaagcacctttatccacag 140343



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>emb|BX248330.6| Zebrafish DNA sequence from clone CH211-278E17 in linkage group 22,
              complete sequence
          Length = 189880

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      actacacataacatgttcaa 26
              ||||||||||||||||||||
Sbjct: 164329 actacacataacatgttcaa 164310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,056,432
Number of Sequences: 3902068
Number of extensions: 2056432
Number of successful extensions: 33487
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33474
Number of HSP's gapped (non-prelim): 13
length of query: 290
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 268
effective length of database: 17,147,199,772
effective search space: 4595449538896
effective search space used: 4595449538896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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