ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl56d07 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 54.7 bits (130), Expect = 5e-08 Identities = 25/29 (86%), Positives = 26/29 (89%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 YMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 834 YMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 52.0 bits (123), Expect = 3e-07 Identities = 24/29 (82%), Positives = 26/29 (89%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 YMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 838 YMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 50.1 bits (118), Expect = 1e-06 Identities = 22/29 (75%), Positives = 26/29 (89%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 835 YTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 48.1 bits (113), Expect = 5e-06 Identities = 23/29 (79%), Positives = 24/29 (82%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LLYPNTSD G A GL+ARGIPNSISI Sbjct: 842 YTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 44.7 bits (104), Expect = 5e-05 Identities = 23/30 (76%), Positives = 25/30 (83%), Gaps = 1/30 (3%) Frame = -1 Query: 402 YMLLYPNTSDHTGQ-AEGLTARGIPNSISI 316 YMLLYPNTSD T + +GLTA GIPNSISI Sbjct: 848 YMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 34.3 bits (77), Expect = 0.073 Identities = 18/29 (62%), Positives = 20/29 (68%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LLYP++ EGLT RGIPNSISI Sbjct: 844 YTLLYPSSE------EGLTCRGIPNSISI 866
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 33.9 bits (76), Expect = 0.095 Identities = 18/29 (62%), Positives = 20/29 (68%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LL+PN+ EGLT RGIPNSISI Sbjct: 844 YTLLHPNS-------EGLTCRGIPNSISI 865
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 33.5 bits (75), Expect = 0.12 Identities = 18/29 (62%), Positives = 20/29 (68%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LLYP++ EGLT RGIPNSISI Sbjct: 831 YTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 33.5 bits (75), Expect = 0.12 Identities = 18/29 (62%), Positives = 20/29 (68%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LLYP++ EGLT RGIPNSISI Sbjct: 817 YTLLYPSSE------EGLTFRGIPNSISI 839
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 33.5 bits (75), Expect = 0.12 Identities = 18/29 (62%), Positives = 20/29 (68%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LLYP++ EGLT RGIPNSISI Sbjct: 839 YTLLYPSSK------EGLTFRGIPNSISI 861
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/24 (66%), Positives = 16/24 (66%) Frame = -1 Query: 387 PNTSDHTGQAEGLTARGIPNSISI 316 P T H EGLT RGIPNSISI Sbjct: 841 PYTLLHPSSKEGLTFRGIPNSISI 864
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 31.2 bits (69), Expect = 0.62 Identities = 15/24 (62%), Positives = 16/24 (66%) Frame = -1 Query: 387 PNTSDHTGQAEGLTARGIPNSISI 316 P T H EGLT +GIPNSISI Sbjct: 841 PYTLLHRSSEEGLTFKGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 30.8 bits (68), Expect = 0.81 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LL+P + EGLT +GIPNS+SI Sbjct: 837 YTLLFPTSE------EGLTGKGIPNSVSI 859
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 30.8 bits (68), Expect = 0.81 Identities = 17/29 (58%), Positives = 18/29 (62%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y +L P D EGLT RGIPNSISI Sbjct: 839 YTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/29 (58%), Positives = 19/29 (65%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LL P++ EGLT RGIPNSISI Sbjct: 835 YTLLLPSSK------EGLTFRGIPNSISI 857
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 3.1 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -1 Query: 399 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 235 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 234 VCDRELCRCMNN 199 +C+ CM N Sbjct: 115 LCETVRGECMEN 126
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LL+P++ G+T RGIPNS+SI Sbjct: 837 YTLLFPSSEG------GVTGRGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LL+P + GLT +GIPNS+SI Sbjct: 838 YTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -1 Query: 402 YMLLYPNTSDHTGQAEGLTARGIPNSISI 316 Y LL+P + GLT +GIPNS+SI Sbjct: 839 YTLLFPTSEG------GLTGKGIPNSVSI 861
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = +1 Query: 295 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQH 399 T DVL DG VR G +G+SR+V V EQH Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQH 471
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -1 Query: 243 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 106 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = -1 Query: 243 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 106 C+C C ++ C++N G CT GL G + L AG+ ++ V K Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 Query: 388 PKHLRPHGTGRGAHRQGHPE 329 P L H +G HRQGHPE Sbjct: 240 PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 Query: 388 PKHLRPHGTGRGAHRQGHPE 329 P L H +G HRQGHPE Sbjct: 240 PPGLHHHHKHKGQHRQGHPE 259
>CB024_HUMAN (Q9BV87) Protein C2orf24| Length = 410 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Frame = -1 Query: 327 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 163 ++++ S V + L L C P P+L C E C +C+ + N +C G + Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303 Query: 162 GMRKL 148 G+R L Sbjct: 304 GLRSL 308
>ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 33) Length = 797 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = -1 Query: 153 KLSSAGYRSMHRRVQKKSLVLPNNEVDGVMFPPALRCFSSSWQT-------SGIVVI 4 KL + GY H R +VL N D + +R F SW SG++V+ Sbjct: 87 KLLAPGYTETHYRPDGHPVVLSPNHTDHCQYHGRVRGFRESWVVLSTCSGMSGLIVL 143
>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II) (PLC-148) Length = 1290 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 54 PEGTSHHRLHYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYC 194 PE ++ HYW I S+H+ LTG Q S S+ + C C Sbjct: 319 PETMNNPLSHYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361
>RW1_DROME (Q9V7H4) RW1 protein homolog| Length = 1567 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = -1 Query: 147 SSAGYRSMHRRV-QKKSLVLPNNEVDGVMFPPALRCFSSSWQTSGIV 10 + G+R R+ QK + N P AL+C S+ W+TS V Sbjct: 1305 AGVGFRKPERKQRQKLNFGQTTNSTSPPESPDALKCISNPWETSSRV 1351
>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)| Length = 194 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 148 ELPHADQTRRARTLIALIIHAPAQLSV 228 ELP D TR +RTL L+ HAP + + Sbjct: 7 ELPAPDATRISRTLSYLLRHAPQTIGL 33
>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT| protein) (Dioxin receptor, nuclear translocator) (Hypoxia-inducible factor 1 beta) (HIF-1 beta) Length = 800 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -3 Query: 349 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 263 HR EQH+ A+PSS+P F +LS+L Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777
>KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4| Length = 520 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 39 KNNGGPEGTSHHRLHYWAKQ 98 K+ GGP G S HR+ W +Q Sbjct: 169 KSTGGPSGRSGHRMVAWKRQ 188
>APEA_THENE (O86957) Probable M18-family aminopeptidase 1 (EC 3.4.11.-)| Length = 452 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 39 KNNGGPEGTSHHRLHYWAKQGIFS 110 K GGPE + H + YW K + S Sbjct: 303 KIQGGPEIQNSHSMRYWKKSAVIS 326 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,123,017 Number of Sequences: 219361 Number of extensions: 1297218 Number of successful extensions: 3223 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3216 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
