ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HISZ_AQUAE (O67223) ATP phosphoribosyltransferase regulatory sub... 31 0.66
2MYO2B_SACCA (Q875X4) Myosin-2B (Class V unconventional myosin MY... 30 1.9
3HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor (Histid... 27 9.5

>HISZ_AQUAE (O67223) ATP phosphoribosyltransferase regulatory subunit|
          Length = 383

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = -2

Query: 278 ALVLSSRYQRQKWGLSSDSTSTAWAPIQSRKLIVNSCHWAEARSCNHVFTYGKLFTLDVL 99
           A+     Y ++ +GL  D T+         +++    H    +    V+ +GK+F+LD  
Sbjct: 61  AITFKDSYTKESFGLRLDFTT---------QVVRTISHLRNVKLPERVYYFGKVFSLDRR 111

Query: 98  GFKNLE--VEFLASRNMI 51
           GF+ L+  VE +  ++++
Sbjct: 112 GFEKLQTGVELIGEKSIL 129



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>MYO2B_SACCA (Q875X4) Myosin-2B (Class V unconventional myosin MYO2B) (Type V|
            myosin heavy chain MYO2B) (Myosin V MYO2B)
          Length = 1419

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +1

Query: 7    KRSIDLFISHRVIQIIIFLEARNSTSRFLNPNTSNVKSFPYVKT*LHDLASAQ*HEFTIS 186
            K+ +D   SH++     +L   N   + L    SN+  F  V    +DL+S Q H     
Sbjct: 1274 KKVLDWCNSHKIRNSTEYLRNVNQACKLLQLRISNISDFQLVCEFCYDLSSLQMHALLTK 1333

Query: 187  FR 192
            +R
Sbjct: 1334 YR 1335



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>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor|
           (Histidine-proline-rich glycoprotein) (HPRG)
          Length = 525

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 328 SCRPKGYDQGRVKPECQPSYCHLDIRDKSGDYHQILLVLPGHLSRAES 185
           SC     D   V+PE + +   ++ R + G   Q+L +   HL R E+
Sbjct: 16  SCAVSPTDCSAVEPEAEKALDLINKRRRDGYLFQLLRIADAHLDRVEN 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,479,710
Number of Sequences: 219361
Number of extensions: 867109
Number of successful extensions: 1670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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