ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U41273.1| Caenorhabditis elegans cosmid C26B9, complete sequence 42 1.2
2emb|CR293520.5| Zebrafish DNA sequence from clone CH211-150J10 i... 40 4.6
3emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, ... 40 4.6
4emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, B... 40 4.6
5emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, B... 40 4.6
6emb|BX088685.8| Zebrafish DNA sequence from clone CH211-206G7, c... 40 4.6
7gb|AC122718.2| Homo sapiens chromosome 5 clone RP11-631M6, compl... 40 4.6
8emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chro... 40 4.6
9emb|CT030257.7| Mouse DNA sequence from clone RP24-374H2 on chro... 40 4.6

>gb|U41273.1| Caenorhabditis elegans cosmid C26B9, complete sequence
          Length = 24378

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaaaacatgattacatgat 150
             |||||||||||||||||||||
Sbjct: 14645 gtgaaaacatgattacatgat 14625



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>emb|CR293520.5| Zebrafish DNA sequence from clone CH211-150J10 in linkage group 7,
              complete sequence
          Length = 168537

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    atgtgaaaacatgattacat 147
              ||||||||||||||||||||
Sbjct: 137330 atgtgaaaacatgattacat 137311



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>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
          Length = 198429

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    caagattcttaaaccctaat 102
             ||||||||||||||||||||
Sbjct: 40951 caagattcttaaaccctaat 40932



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>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project)
          Length = 97714

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    caagattcttaaaccctaat 102
             ||||||||||||||||||||
Sbjct: 65982 caagattcttaaaccctaat 65963



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>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project)
          Length = 101679

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    caagattcttaaaccctaat 102
             ||||||||||||||||||||
Sbjct: 24478 caagattcttaaaccctaat 24459



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>emb|BX088685.8| Zebrafish DNA sequence from clone CH211-206G7, complete sequence
          Length = 169155

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   cttgcttctgcccagtgaca 170
             ||||||||||||||||||||
Sbjct: 37042 cttgcttctgcccagtgaca 37061



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>gb|AC122718.2| Homo sapiens chromosome 5 clone RP11-631M6, complete sequence
          Length = 170043

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   tttccatatgtgaaaacatg 140
             ||||||||||||||||||||
Sbjct: 77718 tttccatatgtgaaaacatg 77699



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>emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chromosome 4, complete
              sequence
          Length = 233270

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    tactagtagaatctgatgat 234
              ||||||||||||||||||||
Sbjct: 207034 tactagtagaatctgatgat 207053



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>emb|CT030257.7| Mouse DNA sequence from clone RP24-374H2 on chromosome 13, complete
              sequence
          Length = 184172

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    ggcattctggcttaaccctt 299
              ||||||||||||||||||||
Sbjct: 169708 ggcattctggcttaaccctt 169727


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,929,348
Number of Sequences: 3902068
Number of extensions: 2929348
Number of successful extensions: 54439
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54423
Number of HSP's gapped (non-prelim): 16
length of query: 348
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 326
effective length of database: 17,147,199,772
effective search space: 5589987125672
effective search space used: 5589987125672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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