>SYK_LISMO (Q8YAB8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 498

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 117 KG*RPLPATCY--QSCEGGYKWHLTYMICNPESQNRFVPKEKL 239
           K  RPLP   +  +  E  Y+     +I N ESQNRFV + K+
Sbjct: 142 KSLRPLPDKYHGLKDVEQRYRQRYLDLITNEESQNRFVMRSKI 184

>SYK_LISMF (Q724I4) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 498

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 117 KG*RPLPATCY--QSCEGGYKWHLTYMICNPESQNRFVPKEKL 239
           K  RPLP   +  +  E  Y+     +I N ESQNRFV + K+
Sbjct: 142 KSLRPLPDKYHGLKDVEQRYRQRYLDLITNEESQNRFVMRSKI 184

>SYK_LISIN (Q92F47) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 498

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 117 KG*RPLPATCY--QSCEGGYKWHLTYMICNPESQNRFVPKEKL 239
           K  RPLP   +  +  E  Y+     +I N ESQNRFV + K+
Sbjct: 142 KSLRPLPDKYHGLKDVEQRYRQRYLDLITNEESQNRFVMRSKI 184

>CP1A1_LIZAU (O42231) Cytochrome P450 1A1 (EC 1.14.14.1) (CYPIA1)|
          Length = 521

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +3

Query: 174 WHLTYMICNPESQNRFVPKEKLRSHASCSWL*-----N*MPALAAAILETTHFASSLALT 338
           W + Y++  PE Q R    ++L+ +            N +P L A ILE    +S L  T
Sbjct: 333 WSVMYLVAYPEIQERLY--QELKENVGLDRTPVLSDRNNLPLLEAFILEIFRHSSFLPFT 390

Query: 339 YLRCTT 356
              CTT
Sbjct: 391 IPHCTT 396

>CP1A1_OPSTA (Q92095) Cytochrome P450 1A1 (EC 1.14.14.1) (CYPIA1)|
          Length = 521

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +3

Query: 147 YQSCEGGYKWHLTYMICNPESQNRFVPKEKLRSHASCSWL*N*MPALA---AAILETTHF 317
           + +   G  W + Y++  PE Q R   + K         L +  P+L    A ILE    
Sbjct: 324 FDTVSTGLSWSVMYLVAYPEIQERLYQEIKDSVGTERMPLLSDRPSLPFLDAFILEIFRH 383

Query: 318 ASSLALTYLRCTT 356
           +S L  T   CTT
Sbjct: 384 SSFLPFTIPHCTT 396

>OPSD_RANPI (P31355) Rhodopsin|
          Length = 354

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -3

Query: 276 FNFKARSSLHASVVFPLGQTCFGFQGYISYMSGAICTHLHMIDSMWRVVVVTLSVKRYM 100
           F     +SLH   VF  GQT   F+G+ + + G I        ++W +VV  L+++RY+
Sbjct: 91  FTITMYTSLHGYFVF--GQTGCYFEGFFATLGGEI--------ALWSLVV--LAIERYI 137

>OPSD_RANCA (P51470) Rhodopsin|
          Length = 354

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -3

Query: 276 FNFKARSSLHASVVFPLGQTCFGFQGYISYMSGAICTHLHMIDSMWRVVVVTLSVKRYM 100
           F     +SLH   VF  GQT   F+G+ + + G I        ++W +VV  L+++RY+
Sbjct: 91  FTITMYTSLHGYFVF--GQTGCYFEGFFATLGGEI--------ALWSLVV--LAIERYI 137

>US34_HCMVA (P09709) Hypothetical protein HHRF8|
          Length = 163

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 345 LDMLGPEKKQNALFRGWQRQ--ELAFNFKARSSLHASVVFPLG 223
           LD+LGP    N   R W+ Q       F  RS L+ S + P+G
Sbjct: 45  LDLLGPVVAGNRSVRTWREQADRARGTFAWRSGLNTSRILPVG 87

>ISPG_SYMTH (Q67PA7) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 370

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 346 LRYVRAREEAKCVVSRMAAARAGI*F*SQEQLACERSFSFGTNLFWLSGLHIIY 185
           LR +RA EEA C + R+AA        + E   C +    G N+  ++ +H  Y
Sbjct: 40  LRQIRALEEAGCDIVRVAAP-------TMEAAECFKEIRKGCNIPLVADVHFDY 86

>EFTU_MYCPU (Q98QG1) Elongation factor Tu (EF-Tu)|
          Length = 396

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
 Frame = +1

Query: 154 HVKVGTNGT*HI*Y---------VTLKAKTGLSQRKNYARMQAAPGFKIK 276
           HV +GT G  H+ +          T+ +K GL++ K+YA + AAP  K +
Sbjct: 12  HVNIGTIG--HVDHGKTTLTAAIATVLSKKGLAEAKDYASIDAAPEEKAR 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,529,791
Number of Sequences: 219361
Number of extensions: 1227647
Number of successful extensions: 2223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2218
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)