ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl56d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 270 2e-69
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 60 4e-06
3gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.060
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.060
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.24
6emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 44 0.24
7gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 44 0.24
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.24
9dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.24
10emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.93
11emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.93
12gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partia... 42 0.93
13ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
15dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
16dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
17dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
18gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA,... 40 3.7
19gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA,... 40 3.7
20dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2... 40 3.7 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  270 bits (136), Expect = 2e-69
 Identities = 149/153 (97%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                        
Query: 23   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 83   agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 138
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                             
Query: 139  cttaattattcatgcaccggcacaactctctgt 171
            |||||||||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744



 Score =  174 bits (88), Expect = 1e-40
 Identities = 94/96 (97%)
 Strand = Plus / Minus

                                                                        
Query: 188  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 247
            ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                
Query: 248  gtgctcagatcagatggatatgctgttcgggatgcc 283
            ||||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcc 2632
to top
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 16   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 65
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 98   ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 142
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
to top
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 130    ccttattgccttaattattcatg 152
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 130   ccttattgccttaattattcatg 152
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 130      ccttattgccttaattattcatg 152
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 130      ccttattgccttaattattcatg 152
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 254      agatcagatggatatgctgttcgggatgcc 283
                |||||||||||| |||||||| ||||||||
Sbjct: 30026452 agatcagatggagatgctgttggggatgcc 30026423
to top
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 254  agatcagatggatatgctgttcgggatgcc 283
            |||||||||||| |||||||| ||||||||
Sbjct: 2698 agatcagatggagatgctgttggggatgcc 2669
to top
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 254   agatcagatggatatgctgttcgggatgcc 283
             |||||||||||| |||||||| ||||||||
Sbjct: 81299 agatcagatggagatgctgttggggatgcc 81328
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 254      agatcagatggatatgctgttcgggatgcc 283
                |||||||||||| |||||||| ||||||||
Sbjct: 30117874 agatcagatggagatgctgttggggatgcc 30117845
to top
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 254  agatcagatggatatgctgttcgggatgcc 283
            |||||||||||| |||||||| ||||||||
Sbjct: 2731 agatcagatggagatgctgttggggatgcc 2702
to top
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    aaacaagggattttttctgca 57
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
to top
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    gcaaaacaagggattttttct 54
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
to top
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds
          Length = 1814

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 255  gatcagatggatatgctgttcgggatgcc 283
            ||||||||||| |||||||| ||||||||
Sbjct: 1558 gatcagatggagatgctgttggggatgcc 1530
to top
>ref|XM_483279.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3198

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 256  atcagatggatatgctgttcgggatgcc 283
            ||||||||||| ||||||| ||||||||
Sbjct: 2978 atcagatggatgtgctgttggggatgcc 2951
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 256      atcagatggatatgctgttcgggatgcc 283
                ||||||||||| ||||||| ||||||||
Sbjct: 25242576 atcagatggatgtgctgttggggatgcc 25242549



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 256      atcagatggatatgctgttcgggatgcc 283
                ||||||||||| ||||||| ||||||||
Sbjct: 25209453 atcagatggatgtgctgttggggatgcc 25209480
to top
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1168A08
          Length = 138135

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 256    atcagatggatatgctgttcgggatgcc 283
              ||||||||||| ||||||| ||||||||
Sbjct: 107699 atcagatggatgtgctgttggggatgcc 107672



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 256   atcagatggatatgctgttcgggatgcc 283
             ||||||||||| ||||||| ||||||||
Sbjct: 74576 atcagatggatgtgctgttggggatgcc 74603
to top
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016N23
          Length = 147336

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 256   atcagatggatatgctgttcgggatgcc 283
             ||||||||||| ||||||| ||||||||
Sbjct: 17761 atcagatggatgtgctgttggggatgcc 17734
to top
>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full
            insert sequence
          Length = 3196

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 256  atcagatggatatgctgttcgggatgcc 283
            ||||||||||| ||||||| ||||||||
Sbjct: 2976 atcagatggatgtgctgttggggatgcc 2949
to top
>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds
          Length = 2232

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 256  atcagatggatatgctgttcgggatgcc 283
            ||||||||||| ||||||| ||||||||
Sbjct: 2053 atcagatggatgtgctgttggggatgcc 2026
to top
>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds
          Length = 2664

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 256  atcagatggatatgctgttcgggatgcc 283
            ||||||||||| ||||||| ||||||||
Sbjct: 2461 atcagatggatgtgctgttggggatgcc 2434
to top
>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for
            lipoxygenase, complete cds
          Length = 3007

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 256  atcagatggatatgctgttcgggatgcc 283
            ||||||||||| ||||||| ||||||||
Sbjct: 2891 atcagatggatgtgctgttggggatgcc 2864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,729,445
Number of Sequences: 3902068
Number of extensions: 1729445
Number of successful extensions: 32750
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32681
Number of HSP's gapped (non-prelim): 68
length of query: 283
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 261
effective length of database: 17,147,199,772
effective search space: 4475419140492
effective search space used: 4475419140492
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top